Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <           <------MYB46(1)                                                --------->At4g35610    ----           <------MYB83                                                <---------At4g35610    ------>ZmHOX2a(1)       --------->ATHB12                                                --------->At4g35610   <-------      <---------YAB1               ------>MYB46(1)          --------------->AGL15          ------>ZmHOX2a(1)    <----------DOF2              <---------MYB59            <---------------AGL15      --------->GLK1(2) ------->TEIL       --------->ZAT14------>MYB83       --------->ATHB12--------->GLK1(2)--------->ARR14(2) ----YAB1<---------WOX13(1)   <-----------GT1  --------->At4g35610   <---------GLK1(2) <---------ARR14(2)   atgaaactttgattggtttttgttcagtcttttgacctaatagaagaagagctaaaccattgctataaccagaagctgatgaagagaagaatcctcctcc  12360800                                                            <---------ZAT18        <---------MYB52(2)                                  --------->ZAT18 <---------At4g35610                                 <----------DOF2 --------->At4g35610                             ------->GAMYB                           <-------TEIL -----------RAV1(1)                           ----------->RAV1(1)        <---------ARR14(2) -->ZmHOX2a(1)                               --------->MYB46(3)          --------->ARR14(2)   ------- --ALFIN1 <-----------GT1             --------->KAN4(2) --------------->AtSPL8      ---------->DOF2   ttctgctgcaaataacatttccaatattgtctcatttgcacattccaacaacagtctttttgtacacaaactccaaatccctataccaaagttcataaat  12360900                                                           ====================HOX2a_HOX2a                                                          =====================HOX2a_HOX2a          <------ZmHOX2a(1)                               <------ZmHOX2a(2)    --------->ATHB12                                     --------->ARR11(3)    --------->YAB1                                       <---------ARR11(3)<---------ZAT6    <---------ICU4                                 <----------DOF2      ------>ZmHOX2a(1)   --------->ICU4                         ========================HOX2a_HOX2a   <---------ATHB12                       <------ZmHOX2a(1)------>ZmHOX2a(2) --------->YAB1               <-----------GT1  <---------TOE2(3)       --------------------->WRI1  -- -->WOX13(1)    ---------->DOF2           =======================HOX2a_HOX2a     <-------TEIL    ----   caaaaatcattaggatgacaaagaaggcatttttacagaaaacaggattaatgctttgggatctaaaacacttcctagtgtgattcatcttcagatttag  12361000                                                                                          --------->LBD16                                                                                         <---------ANAC46                                                                                       ------->TEIL                                                                            ------>ZmHOX2a(2)                                                                           <---------At4g35610                                                                          <---------AGP1<---------LBD16                                                     <------MYB46(1)      --------->ARR14(2)                                                     <------MYB83         ------->TEIL --------->MYB52(1)           <---------AHL20(2)            ----------->ARR10        <---------LBD16    <---------SPL7        --------->AHL20(1)      <---------AHL20(2)   ----------->GT1      <---------ARR14(2)        <---------AHL20(1)     <---------AHL20(2) <------ZmHOX2a(1) --------->LBD16 <---------ANAC58     --------->AHL20(2)        --------->AHL20(2) =================================HOX2a_HOX2a      -     --------->YAB1      ----------->GT1 --------->ANAC58        --------->MYB52(1) --------->ANAC55(2) --------->GT1          <---------MYB46(3)  --------->CCA1(2)    <---------At5g28300<---------ANAC58< ------>DOF2           <---------ANAC46  --------->ANAC58       <-----------GT1     <---------ANAC55(2)   aaagaaataatatttttttgagactgtgggtaattaaatggggaagaaacgaggatggtgaagtatttaccggatggatctgagagacgtaccggagaga  12361100           --------->ZAT14           <---------ZAT14         <------NtERF2      <------NtERF2      --------->At4g35610      <---------At4g35610      --------->ATERF1(1)     ------>NtERF2     ----------->RAV1(1)     <---------ATERF1(1)     <---------RAP2.3(1)    <---------ATERF1(2)    <---------DEAR3(1)    --------->ATERF1(2)   <------NtERF2   --------->ATERF1(1)   --------->RAP2.3(1)  <---------ORA47(2)                                                 *TSS  --------->LBD16                                                    <---------MYB52(1)  <---------RAP2.3(1)                                               <-------GAMYB  <---------ERF1                                                   --------->MYB55(2)  <---------RRTF1(1)                                               --------->MYB52(2)  ------>NtERF2                                                    <------MYB46(1)  <---------ATERF1(1)                                              <------MYB83 <---------RRTF1(2)                                                <---------MYB46(3) <---------DREB2C(2)                                             <--------P <---------RRTF1(3)                                            <------MYB46(1) <---------ATERF1(2)                                           <---------ANAC46 <---------DEAR3(1)                                       <-----------RAV1(1) --------->ATERF1(2)                                      <---------MYB46(3) <---------RAP2.6(2)                                   <----------DOF2    <----------DOF2  ---------- <---------RAP2.3(3)                               <---------ZAT18<---------AtMYB61     --------->ANAC58 <---------RAP2.3(2)   ------->GAMYB            <------MYB83  <---------MYB46(3)        --------->ANAC58 -------->RAP2.6(3)  <---------At5g28300        <------MYB46(1)<------MYB83            --------->DAG2 ---------LBD16     --------->MYB52(1)         <---------AtMYB61<-------GAMYB         ---------->DOF2   atgccggcggcagagcagagagtaacggcgagagagagagagagagagattggtgggcttttgttgggttggttagctttgtgatggaaaaagcaaagct  12361200                                                                           ------>ZmHOX2a(1)                                             <---------TOE2(3)       -------->ATHB1                                            --------->YAB1           <---------ICU4                                            <---------ICU4           --------->ATHB51                                           --------->ICU4           <---------ATHB51                                          <---------AHL20(2)        --------->ICU4                                         --------->YAB1           --------->WOX13(1)                                        <---------YAB1           --------->AHL20(2)                                   ----------->GT1              ------------>CBF                                  <---------TOE2(3)             <---------ATHB12                  <----------DOF2 <---------TOE1(3)          <---------AHL20(2)        <---------DAG2           <-----------RAV1(2) <---------At5g28300  --------->TOE2(3)<--------- >DOF2  <----------DOF2   ----------------->AGL3    <-----------GT1 <---------ATHB12  <---------YAB1   cattagttaactttatttgtctttgagttccattttcaggttataataatgtttttacagtttttaatcaattattcctaaaacttatatgatttactat  12361300                                                       ---------->DOF2                                                 <--------ATHB1                  <---------YAB1                                                 -------->HAHB4               --------------->AGL15                                                 --------->ATHB12             <----------DOF2                                                 <---------ICU4               <---------------AGL15              --------->ATHB12                  <---------YAB1                <---------DAG2          --------->AHL20(2)                    --------->ICU4               <-----------------AGL3          <---------AHL20(2)                    <---------ATHB12           <-----------GT1         --------->AHL20(2)                    <---------TOE2(3) <------ZmHOX2a(2)      <---------AHL20(2)                      --------->YAB1    --------->ARR14(2)          --------- --GT1--------->AHL20(2)                <---------ALFIN1        <---------ARR11(3)          ---------   gtgttttataaattaatctttggcacaaatatgagcttatcccctctctaatgattcgaaagaccagatcagtttttttactttttatagaggcaaggca  12361400                                                                 --------->MYB52(2)                                                                 --------->ATHB12                                                             <---------MYB46(3)                                                            <---------TOE1(2)                                                       <---------ARR11(3)                                                       --------->ARR11(3)        <---------ANAC46                                                      --------->RVE1(1)          <---------REM1(1)  --------->ATHB12                                  --------->AHL20(2)    ---------->DOF2 >ANAC58                                      ----------->GT1----------->GT1xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) >ANAC58                --------->ZAT6 <------ZmHOX2a(2)    <---------TOE2(2) --------->ALFIN1   <---   tagatgatttgagaccacaattctcaactctacattatgggatcaaactagaaaaaaaatccttggttaattggagcaaagtggtgtagtttggccaaag  12361500                                                                              ----------->GT1          <---------ZAT14                                              <---------ANAC58          --------->ZAT18                     <---------WOX13(1)       --------->ANAC55(2)    xxxxxxx          <---------ZAT18                   --------->ATHB51           <---------ANAC55(2)  xxxxxxxxx        <---------ZAT14                 <-------TEIL              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        --------->ZAT14               --------->LBD16    ---------->DOF2    <---------WOX13(1)xxxxxxx        <---------ZAT18              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --------->ATHB12xxxxxxxxxxx  >>>>>>>>>>>>>>>>>LFY            -------->P--------->ATHB12 --------->ARR11(3)     --------->AHL20(2) ---ZmHOX2a(1)<----------DOF2    <-----------GT1      --------->YAB1   <---------ANAC58   xxxxxxxxxxx   gatgccccagtgtgctcttttttttggttttttagttacccgtgcataattgactatcaaaaagagctcgaatgcgtaattggtgataaattcaaactta  12361600                                                                                 <------MYB83                     <xxxxxxxxxxxxxxxxsmallRNA(i)                                <------MYB46(1)                    <xxxxxxxxxxxxxxxxsmallRNA(s)                                --------->MYB46(2)                   <xxxxxxxxxxxxxxxxsmallRNA(s)                                 --------->MYB59                   ------->TEIL                                                 --------->MYB111(2)                 <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                         --------->MYB111(1)                <xxxxxxxxxxxxxxxxsmallRNA(s)                                   <--------P              xxxxxxxxxxxxxxxx>smallRNA(s)                                   <------MYB83              xxxxxxxxxxxxxxxx>smallRNA(i)                                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                             <------MYB46(1)             --------->LBD16                                                --------->MYB111(2)           xxxxxxxxxxxxxxxx>smallRNA(s)                                     <---------AtMYB61           <---------LBD16                                                  --------->MYB46(2)          ------->TEIL                                                      --------->MYB111(1)         <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                                    --------->MYB55(2)         xxxxxxxxxxxxxxxx>smallRNA(se3)                                     <---------MYB46(3)        --------->ZAT14                                                     --------->MYB59        <xxxxxxxxxxxxxxxxsmallRNA(s)                                       <--------P        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                               <---------MYB55(1)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                             <---------MYB52(1)        <---------ZAT14                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                            ------------>AtMYB15      --------->At5g28300                                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                           --------->MYB52(1)       ======     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                            ----------->TGA1          <-----    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                            ----------->HVH21       -------- xxxxxxxxxxxxxxx>smallRNA(si3)      <------------------------ANAC81 <---------WOX13(1)      <-------- xxxxxxxxxxxxxx>smallRNA(i2)     <----------DOF2                   <---------AtLEC2         <-------- xxxxxxxxxxxxx>smallRNA(si3)    ------>ZmHOX2a(2)       <-----------GT1 <<<<<<<<<<AtTINY2   <-------- xxxxxxxxxxxx>smallRNA(i2)    <---------ARR11(3)     <---------AHL20(2)--------->RAP2.6(3)  <xxxxxxxx xxxxxxxxxxx>smallRNA(fl3)    --------->ARR11(3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       ---------   tgttatacggtgaaccggatgtatgcagagatgatctttttttttgtctgtctatttttttcgctgtttgaatgacggtaggtaggtcccttctccagga  12361700  Previous    Next  AGI:  At1g34010.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G22790.2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G22790.1); similar to hypothetical protein OsI_002597 [Oryza sativa (indica cultivar-group)] (GB:EAY74750.1) Range:  from: 12359516    to: 12361169    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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