Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     --                                                                                                  <--                      ---------->DOF2                                                             ---                   --------->TOE2(3)                                                        ---------                 ------>MYB83 --------->At4g35610                           <------ZmHOX2a(1) -------            <-----------GT1   <---------At4g35610                <---------ANAC58      <-------GAMYB  <---------YAB1 ------>MYB46(1)                                 <---------ANAC58     ----------->GT1 ------->ICU4 --------->MYB46(3)  ---------->DOF2    ---------->DOF2       <---------YAB1  <---------ANAC55(2) ------->AtSPL8 ----------->RAV1(1)         <-----------GT1   <---------GLK1(2) ---------->DOF2  ----   acttatttttgatttcaccaacataaaagttatgctgaaagtgatttcacgtttagaaagaccatattcttgcgattaggattaaagagggttacataaa  12355100                                                                                  --------->STY1(1)                                                                                  <---------STY1(1)                                                                              ----------------->AGL1                                                                              <-----------------AGL1       ----------->GT1                                  --------->YAB1      <-----------GT1 ------->WOX13(1)                                       <------ZmHOX2a(1)<---------AHL20(2) -------AHL20(2)                                      <---------TOE2(3) --------->AHL20(1) ------>AHL20(2)                      --------->HSFB2a(2)               <---------AHL20(1) >TOE2(3)                         <---------TGA1a   --------->ICU4    <---------ARR11(3) -->AHL20(2)        <------ZmHOX2a(1) <---------HSFB2a(2)             --------->AHL20(1) ----->AHL20(2)   --------->MYB59 --------->TGA1a --------->YAB1      <---------AHL20(1)   ttaatcaaatggtcaaaaattaggaaatgagaactcacttgtggaagagaagtcataaggataagagaccaatatatatttccccttggggtcgagtttt  12355200                                                   <------NtERF2                                                   --------->ATERF1(1)                                                  --------->LBD16                                                  <---------ATERF1(1)                                                 <---------ANAC46                   <-----------GT1               <---------DEAR3(1)                <---------MYB46(3)              <---------LBD16              <-------GAMYB                     <---------At4g35610          <----------DOF2   <-----             --------->MYB52(2)               <---------RAP2.6(2)    -------->ATHB1            ------           <---------MYB52(1)                 <---------DEAR3(1)     --------->ATHB12          <-----       <---------ANAC46                <-----------------AGL1        --------->ATHB51         <------       <---------ANAC58             <---------ANAC58                <---------YAB1    <----------DOF2       <---------ANAC58             <---------ANAC58    <----------DOF2  <-----------GT1    ---------   ttgggcctggcttgttagttgttacaatcgagtgtgatgcgtcccatttcggcggagactttgaatgtgtattattgacctttgattcctttgtccatca  12355300                                                                                                 ----                     <---------AHL20(2)                                                          <---                    --------->AHL20(2)                                                           <---    <---------ANAC46<---------AHL20(2)                                                           ---- ---HAHB4           <---------AHL20(1)                                                        ------- --->ATHB12         --------->AHL20(1)           <-----------GT1                             <------- ----ICU4          --------->AHL20(2)    <---------ZAT18                 ----------->GT1    --------- ---ATHB12  <---------ANAC58             <---------ETT(2)      <---------ANAC46          <-------TEIL >WOX13(1)  <---------ANAC58        --------->LBD16        <-----------HVH21        --------->AHL20(2)   tttgttttgtgtttgcttaaaattaatttttggtcttccccagtcgactatatactctcttggtcacttgtaacgaagtaacaaaatgaaatacatgtca  12355400      <---------AHL20(2)     <---------AHL20(1)     --------->ARR11(3)     --------->AHL20(1)     <---------ARR11(3) ----->TGA1a ------TGA1a                                                                    ---------->DOF2 ------O2                                                                   ---------->DOF2 ----->O2                                                              --------->WRKY38(1) ---->HVH21                                                          <-------GAMYB ----------->GT1 ----HVH21            <---------ZAT14                               --------->MYB52(2)         <----- >ANAC46  <---------AHL20(2)             --------->WRKY38(1)        <---------MYB46(3)         ------   catgtgatatatttatacacagactacaatgaaatcaagtatgttgactaagaagagaagaaaatgaagtttgttgactaaagaaaggtcaaaattttta  12355500                                                           <---------ARR14(2)                                                           <---------ARR11(3)                                                           --------->ARR14(2)                                                           <---------ARR11(1)             --------->YAB1                        --------->ZAT18            <---------ATHB12                       <---------ZAT18     --------->YAB1              --------->YAB1    --------->ZAT14    <---------YAB1         --------->YAB1       --------->ALFIN1  --------->YAB1      ----------->GT1         <---------ANAC46                              --------- --------->ICU4     <---------ARR11(3)--------->ZAT6       --------->ARR11(3)              <---------ARR11(3) ----HSFB2a(2)    <---------YAB1 --------->TOE2(3) <---------ZAT14                         --------->GLK1(2) --->HSFB2a(2)  ---------->DOF2<---------TOE2(3)*TSS      <---------CCA1(2)                --------->ARR11(3)   gaaattatcatcaaatcataaagatagtaaaataatgttaacagtatgaagtgtgaactcatatcttcgaagagattgagacagagtttagaaaatctct  12355600                          <---------TOE2(3)                          <---------YAB1                        ------->GAMYB                       <---------MYB52(2)                                  <---------MYB46(3)                  --------->TOE1(3)                                       --------->ALFIN1                  --------->AtMYB61                ------>ZmHOX2a(1)     <---------MYB52(1)                  --------->TOE2(3)  --------->ARR14(2)                 --------->LBD16            <---------HSFB2a(2)      --------->GLK1(2)        <---------AHL20(2)  --------->GLK1(2)    --------->MYB46(3)      --------->ARR14(2)     <---------LBD16 >RVE1(1)   --------->HSFB2a(2)      <---------ARR14(2)  <---------AHL20(2)----------->GT1   tacaaatctagtttctacaacctcaactaacattgtccaaatctgtctctatcctctgttttatttttttcttccggtggtacaaaaattcacaatgaac  12355700                                                                                   --------->ARR14(2)                                                                                   <---------ARR14(2)                                                                              --------->ANAC58                                    -------->P                                --------->ANAC58                                    ------>MYB46(1)                       ------>MYB83                                    ------>MYB83                          ------>MYB46(1)            <---------AHL20(2)    <---------MYB111(1)                   <---------MYB59   <---------At4g35610            --------->AHL20(2)    <---------MYB46(2)                   --------->MYB46(3) --------->At4g35610        <---------YAB1   <---------ANAC58                            <-----------GT1  <-----------RAV1(1)      --------->YAB1     <---------ANAC58                   <----------DOF2<---------ATHB12     -----   tgtatttatcacaattaatgaccgattgcttcttcacctactctctctctctctctctctctctttggaagtaaccaaacaagcctatatgctgctgatc  12355800                                                                          --------->ATHB12                                                                       <-----------------AGL2                                                             <----------DOF2            ----------->GT1                                                          <-----------------AGL2 ---------->DOF2                                                      --------->GLK1(1)<-----------------AG           --------->ANAC58                           --------->ARR14(2)<---------------AGL15           --------->ANAC58                           <---------GLK1(1)<-----------------AGL3       ------>NtERF2                                  <---------ARR14(2)--------------->AGL15       -      <----------ID1                           <---------ANAC58        ----------------->AGL2    ---- ->ZmHOX2a(2)         <----------DOF2          <---------ANAC58        <-----------------AGL1    <---   ccatctaggggccaagcctctcttctttaaaaacttttgacttccattttcttgagaattcccctttctgggttcttgatttggaaagatgggtaacaag  12355900                                              ------>ZmHOX2a(2)                                             <------ZmHOX2a(2)                                            --------->GLK1(2)                                            --------->ARR11(3)                                            <---------ARR11(3)                                            <-----------ARR10                                            <---------ARR14(2)                                            --------->ARR14(2)                                            <---------AGP1                                           <------ZmHOX2a(1)                                      --------->ALFIN1                                     ================HOX2a_HOX2a        --------->YAB1               <------ZmHOX2a(1)        <---------ICU4               ===============HOX2a_HOX2a                     <---------ANAC58       --------->ICU4              --------->ALFIN1                                 <---------ANAC58       <---------ATHB12           ==================HOX2a_HOX2a                   <---------AHL20(2)  --------->TOE2(3)               ===================HOX2a_HOX2a                  <-----------GT1 -------->GLK1(2)                 <------ZmHOX2a(1)                       --------->At4g35610       < ----->ARR11(3)           --------->ICU4<------ZmHOX2a(1)               <-----------RAV1(2)         < ------ARR11(3)         ---------->DOF2 =============HOX2a_HOX2a------->TEIL <------ZmHOX2a(1)     --   ataatctcaatgatgaagaaagatagcaaagatggaggaggaggaggatctaagagcaagagaatgaatcggtctcagaggaaattacttgctgatgaag  12356000  Previous    Next  AGI:  At1g33980.1    Description:  ATUPF3/UPF3; nucleotide binding. similar to unnamed protein product [Vitis vinifera] (GB:CAO46866.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Nonsense-mediated decay UPF3 (InterPro:IPR005120) Range:  from: 12351573    to: 12355003    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g33990.1    Description:  hydrolase, alpha/beta fold family protein. Identical to Putative esterase At1g33990 [Arabidopsis Thaliana] (GB:Q9FVW3;GB:Q56Z89;GB:Q8L971;GB:Q9FX11); similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT4G09900.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16381.1); contains InterPro domain Alpha/beta hydrolase fold-1 (InterPro:IPR000073) Range:  from: 12355548    to: 12358011    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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