Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                   <---------ATHB12                                --------->MYB52(1)  <---------ANAC55(2)                       ------->GAMYB            --------->ANAC58                      --------->MYB46(3)        --------->ANAC58                                -----                    --------->MYB52(1)         --------->WOX13(1)                             <------                    ------>MYB83----------->RAV1(1) --------->ANAC58               *TSS      --------                    ------>MYB46(1)         --------->ANAC58         --------->ANAC58 <---------ANAC58                  --------->AtMYB61 --------->At4g35610---------->DOF2 ---------->DOF2<---------ANAC58    <-----------RAV1(2)----------->RAV1(1)  --------->ANAC58      <----------ID1  <---------ANAC58    ===============================RAV      --------->ANAC46   --------->CCA1(2)  <---------ANAC58 ---->MYB52(1)    <---------MYB59 --------->MYB46(3)--------->ANAC58 --------->ANAC58 <---------ANAC46   acagagccagaagaatcaaacctaaccacagaatcaacagatgaataagcaatcaagtaaagaagatagagacgaaagaagattacttgcttaaaaaccg  12351200                --------->YAB1                --------->TOE2(3)               <<<<<<<<<ARR1              <----------DOF2               <<<<<<<<<ARR2        --------------->AtSPL8      --------->DAG2         <---------ARR11(3)     ---------->DOF2         <---------AHL20(1)  --------->At4g35610        --------->AHL20(1)                   <<<<<<<GRF7 --------->GLK1(2)           --------->ARR11(3)               ----------->RAV1(2)                  <- ---->LBD16   --------->GLK1(2) <----------DOF2        ----------->GT1                         ------ ---LBD16<----------ID1     --------->RVE1(1)       --------->GLK1(2)                          ------ ->MYB52(1)------------>CBF --------->CCA1(1)   --------->ANAC46----------->HVH21    --------->ANAC46   gagaagctaaagcgacaatcttagagaaaaatatcttttttggactttatacagaatcagtaaaacctgacaagaccagaagtctctgcgaaacaaactc  12351300                        <---------ANAC55(2)                     <------ZmHOX2a(2)                    <---------ARR14(2)               <---------O2            ----------->HVH21         --------->TOE2(2)                                     --------->YAB1         --------->TOE1(2)                                   --------->AHL20(2)        --------->At4g35610                      <---------TOE2(1)        ----------->RAV1(2)                      <---------TOE1(1)--------->YAB1 --------->ANAC58        <---------At4g35610                     --------->SPL7<---------YAB1     --------->ANAC58        --------->ZAT2  --------->ANAC55(2)   <---------SPL7 <---------AHL20(2) --------->SPL7 <---------DAG2<---------ANAC46             --------->ANAC46--------->YAB1    --------->At5g28300 <----------DOF2------>NtERF2             <-----------GT1--------->YAB1    --------->SPL7--------->YAB1 --------TOE1(2)<---------LBD16      <---------YAB1      <--------HAHB4   ------>ZmHOX2a(1)  -------- --------->AtSPL8   --------->ARR14(2)    --------->ANAC46 <---------YAB1<---------SPL7 <---------ATHB12 --------->AtSPL3 --------->LBD16<---------WOX13(1)     <---------YAB1   --------->TOE2(2)   --------   gtactttatcacctgcgacgcggatcacctattagattgattatacaccgtacgatgtattattataatcttcatcctacggtaagcccaataacaagcc  12351400                                      --------->TOE2(3)                                      --------->TOE1(3)                                 <---------At4g35610                                 --------->At4g35610                               --------->SPL7                             <---------RAP2.6(3)                             ------>NtERF2                             <-----------HVH21                             <---------SPL7                         <---------AHL20(2)                            --------->DEAR3(1)                      <---------YAB1                            <---------ANAC58             <-------GAMYB                           ----                            <---------ATERF1(2)         <---------MYB46(3)                      -----                            <---------ANAC58            <---------DEAR3(2)                     <-----  <-----------GT1      --------->At4g35610   --------->TOE2(3)      --------->AHL20(2)   ------------ ->ANAC58           --------->ICU4  ------>NtERF2      <---------DEAR3(1)---------->DOF2<------------ ->ANAC58   --------->YAB1  --------->ATERF1(2)     ----------->HVH21   <---------ICU4  <------------   catttcacaaactatcagagtaattatctgccgtccgatgccttaaaacttaatccgacggttgaaacatataattaaggcccattagaggcccatatag  12351500                                                            <---------HSFB2a(2)                                                            --------->HSFB2a(2)                                                <---------ICU4                                                --------->AHL20(2)  ---------->DOF2        --------->ATHB12   <---------AHL20(2) ------->GT1           <---------WOX13(1)  --------->AHL20(2)    <------ZmHOX2a(1) ------>GT1           <------------CBF     <---------AHL20(2)--------->LBD16 ----TOE2(3) --------->WRKY38(1)      <---------MYB52(1)   <---------LBD16 ----->AGL1  --------->WRKY12      <---------ANAC46   <----------DOF2          <------ZmHOX2a(1) -----AGL1   --------->ETT(2)     <---------LBD16  <-----------GT1       *TSS ----------->GT1 -----AG  --------->ANAC46      --------->ETT(2)<---------AHL20(2)---------->DOF2   gttaaaaagtccacgtagaccgaagattgatttgtctacgggtattttaattttttcttttcccagaggaaagggaagagaggaaacaaaaattagggca  12351600                               <<<<<<<<<TBF1                   <-----------GT1<<<<<<<<<TBF1                                       <---------TOE2(3)               <------------------------ANAC81                             --------->ANAC46    <---------ANAC46        <<<<<<<<<TBF1                --------->ATHB12  --------->ANAC58    <---------ANAC58  <----------DOF2             <---------ANAC58         --------->ANAC58    <---------ANAC58  <---------DAG2 <<<<<<<<<TBF1<---------ANAC58 <----------DOF2    <---------TOE1(3)   aaattagcgtattgatgtgtttcacttttcttcttcttcttcttcatcgtgttcgtgtttgatttgcgactttctccaaggaaaatttagggttttcgat  12351700                                            <---------DAG2                                        <--                           <---------MYB46(3)                                                    ====                          <--------P       <------NtERF2                                         ----                          <---------------AtSPL3                                                 ----                         <-------GAMYB   --------->RAP2.6(2)           --------->TOE2(3)     --------                >>>>>>>>>TBF1       <---------ANAC58            ------>ZmHOX2a(2)   ------>ZmHOX2a(1)          --------->HSFB2a(2)       <---------ANAC58            ===========================HOX2a_HOX2a          <---------HSFB2a(2)   <-----------HVH21 <----------DOF2   <---------CCA1(2)      <---------At4g35610      <----------DOF2   --------->MYB55(2)------>NtERF2        <------ZmHOX2a(2)    =================    --------->HSFB2a(1) <---------MYB46(3)<---------RAP2.6(3)  ============================HOX2a_HOX2a    <---------HSFB2a(1)--------->ALFIN1  --------->DEAR3(1)    --------->GLK1(1)  ------>ZmHOX2a(2)   gaaggaacctttgcagaagaagaaggtggttgttcgtcacttgccgccttctctttcacagtccgatctcttatctcaaattgatcctcgtttcgctgat  12351800                       --------->LBD16                       --------->HSFB2a(2)                       ------>ZmHOX2a(1)        <---------ANAC58        <---------ANAC58  <---------YAB1       <---------HSFB2a(2)                <------MYB83 -----GAMYB       <---------ANAC58                        <---------ANAC46 =============================HOX2a_HOX2a                 <------MYB46(1) ------->GT1 <---------ANAC58          <---------TOE1(3) --------->MYB55(2)                     <---- -->ZmHOX2a(2)    <---------ANAC58     <---------TOE2(3) <---------MYB46(3)                    <----- --->HVH21   <---------ANAC58   <-----------RAV1(2)    <---------MYB52(1)                      <----- ===HOX2a_HOX2a<---------MYB52(1)   <--------P   <-----------GT1                         ------->TEIL   cgttacaattgggtttcgtttcgtcctgggaagtccaggttagggttttattttctcgttgggtcttgaatttggaattttggtttctatgaattttagg  12351900    ------->TEIL <---------ANAC55(2)                <---------TOE2(3) --------->ANAC55(2)               ---------->DOF2                                 --------->ARR11(3) -----ZAT6              <---------YAB1            <---------AHL20(2)               <---------ARR11(3) ----TOE2(3)   <---------AHL20(2) <---------AHL20(2)    <-----------RAV1(1)        <---------GLK1(2) ----TOE1(3)   --------->AHL20(2) --------->AHL20(2)    <---------YAB1  <---------YAB1              -   gttacgaatttttgtaatttaagaagatgatggaaattaaagaagattgtatttgattatgttggaaattgaagattattgtatagatttttgttactta  12352000                                                <---------ANAC46                                                <---------ANAC58                      --------->YAB1                                                <---------ANAC58                 <---------At4g35610              --------->YAB1                    --------->ALFIN1                 --------->At4g35610 <---------ANAC46                             <---------bZIP60(2)        <---------ANAC46   --------- -------->ATHB12<---------YAB1                <---------ANAC46      <-----------RAV1(1)<---------AHL20(2)   gttgattgtagagaaattatacttagtagtattgggttttttttagtgatgtgtgtgtgtgtttgtgtttttgtggtgtcttcagctataaaaatcagaa  12352100  Previous    Next  AGI:  At1g33970.1    Description:  avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative. similar to avirulence-responsive family protein / avirulence induced gene (AIG1) family protein [Arabidopsis thaliana] (TAIR:AT4G09950.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16380.1); contains InterPro domain AIG1; (InterPro:IPR006703) Range:  from: 12349443    to: 12351183    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g33980.1    Description:  ATUPF3/UPF3; nucleotide binding. similar to unnamed protein product [Vitis vinifera] (GB:CAO46866.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Nonsense-mediated decay UPF3 (InterPro:IPR005120) Range:  from: 12351573    to: 12355003    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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