Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     <---------DAG2                   <----------DOF2                                                 --------->ATHB51              <---------ZAT2                                                      --------->ICU4              <---------At4g35610                                        <---------ZAT2           --------->LBD16                                               <---------At4g35610          --------->LBD16                   <------ZmHOX2a(1)            --------->ZAT2 ------->YAB1--------->ALFIN1           --------->TOE1(2)               ------>ZmHOX2a(1)    -------- -------ATHB12--------->ABI4(2)    --------->SPL7            <---------bZIP60(2)<---------------AGL15 ---GT1  <---------LBD16      <---------------------WRI1  ----------->HVH21     --------->YAB1   atgatggtgttcccggtgctgctttttccattttcgctacgacctaggagaagtaagtttgtaacggggcattcctgctcagccataatttgaaaaccac  12281400                         <-------TEIL                         ------>ZmHOX2a(2)                        <------ZmHOX2a(2)                       <---------ARR14(2)                       --------->ARR14(2)                    --------->ANAC58                    --------->ANAC46                    --------->ANAC58     <---------AHL20(2)                   <---------LBD16       --------->AHL20(2)        <---------AHL20(2)              <-                  <---------AtLEC2       <---------AHL20(1)        --------->AHL20(2)             <--                 --------->ZAT14         --------->AHL20(1)    <---------RVE1(1)                <----                 <---------ZAT14        --------->AHL20(2)    <---------ARR11(3)             --------                 <---------REM1(2)      <---------AHL20(2)    --------->ARR11(3)            --------- ->MYB46(3)  <-----------GT1   <---------ZAT6--------->AHL20(2)<---------CCA1(1)           ----------   caagacgttgctaattttctgcacggatccatagtattacaaataaattatacatgaacaaatagatatttaaaatgaagaatgaagagaagaaaaagtt  12281500                               ------>ZmHOX2a(2)                             --------->ARR14(3)                             <---------ARR14(3)            --------->ANAC46 <---------ARR14(2) --------WOX13(1)      <---------MYB52(2)    <---------ATHB12 ----------CBF ------>MYB83  --------->ARR14(2)                                        --------->ATHB12 -----AHL20(2) ------>MYB46(1)<------ZmHOX2a(2)                                       --------->ICU4 --->GT1   --------------->AGL15 ----------->GT1                                    <------------CBF >DAG2    --------->REM1(1)  --------->ARR11(3)  --------->ANAC46          <---------ARR11(3) >DOF2   <---------ZAT14     <---------ARR11(3)--------->MYB52(1)          --------->ARR11(3)  <-----   aattggtagactacaccaaatgggaactcacgatcttgtaaaaactaatcaacgaagcagttcaagactaaatagaagacattttgtattgatttggctt  12281600                   <---------AHL20(2)                                                            ----                 <---------YAB1                                                                <-----              <---------MYB52(1)                                                               <-----             --------->TOE2(3)                --------->ARR11(3)      <---------TOE2(3)        <-----       <----------DOF2             ------->TEIL               <-------GAMYB           <---------YAB1     --------->At4g35610  <-----------HVH21 <---------YAB1   ----------->GT1<-----------GT1    <----- -----DOF2  ----------->GT1   --------->At4g35610            <---------MYB46(3)   --------->AHL20(2)   tgaaaacagctatatcgttatttttatgtgtcatatgaatttgtttatgattttgtactagtgtggttaatttaggtgttacaatattatgcatataacg  12281700                                                                                        --------->YAB1                                                                                        <---------ICU4                                                                                       <---------YAB1       --------->MYB52(1)                                                              --------->ICU4    --------->ANAC46                                                              ----------->GT1    --------->ANAC58                                                            --------->ICU4    --------->ANAC58       <----------ID1                                    --------->AHL20(2) ----->ALFIN1            ---------->DOF2       <------ZmHOX2a(1)           <----------DOF2 <--------- ----bZIP60(2)          ---------->DOF2<---------DAG2                      --------------->AGL15 ----ANAC58          --------->YAB1    <----------DOF2                     <---------------AGL15 ----ANAC46  ---------->DOF2    --------->ANAC58                     <------------CBF<---------ICU4 ----ANAC58--------->At5g28300  --------->ANAC58             <----------DOF2 <---------AHL20(2)   tggaacaagaaacggtaaaggaatcagaaaggccaagacaactttatgaggagtgagagacaacttttgagcattgactttaattagtaattataaccta  12281800                                         <---------AHL20(2)                                       <---------AHL20(2)                   <---------YAB1    <---------AHL20(2)              --------->ALFIN1      <---------AHL20(1)              ----------->GT1 <---------At4g35610                             --------->YAB1            <---------ANAC58  <---------ZAT2                <---------HSFB2a(2)            <---------ANAC58 --------->ANAC58               --------->HSFB2a(2)            <---------ANAC46 --------->ANAC58        <---------TOE2(3)       <---------YAB1  -------- --GT1---------->DOF2      *TSS    <---------CCA1(2) <---------YAB1      ----------->GT1    ---------   tagccatctaaagggggtgtgatttttgtgcaagctcatatatttttttgaaattgagattgctcgaagtcaagaaggtatcatggtgacacaaaaaagt  12281900                                <------MYB83               <---------ANAC46 <------MYB46(1)                                               <------              <---------At4g35610                                                             <------ --------->TOE2(3)              <---------DEAR3(2)                                            <------ --------->TOE1(3)----------->HVH21                                --------->MYB46(3)    --------->ANAC46 ->DAG2       <---------LBD16  <---------DEAR3(1)          <----------ID1            --------->CCA1(2) ->DOF2       --------->At4g35610                   <<<<<<<<<<<<<<<<<LFY <---------MYB52(1)----------   atgccttaaattttgcagcggagacaggcttagtcggttctaaactagttcatactccaatggaacaaaaccatcgtttgggtttggatacaagtgacgt  12282000                                      --------->AHL20(2)                            <---------ANAC58                           <------MYB46(1)                           <---------MYB46(3)                          <---------AtMYB61<---------AHL20(2)                        --------->ARR14(2) --------->AHL20(2)                       <------ZmHOX2a(1)  <---------AHL20(1)       =======================HOX2a_HOX2a <---------AHL20(2)       ------>ZmHOX2a(2)<---------ARR14(2)--------->AHL20(1) ---ANAC46  <---------WRKY18(1)       <---------AHL20(2) ---ANAC58 --------->WRKY38(1)  <---------ANAC46                                 <-------TEIL ---ANAC58 ----------->HVH21<---------ANAC58                            <---------YAB1 ->HVH21   --------->WRKY12<------MYB83   --------->AHL20(2)<---------ARR11(3)<---------YAB1    -----   tctctctgatccattgacctatagaggattggttgtgtatttaatttattttgctaatgcaagacctgatatttcttattatgttcatgtctcaatttat  12282100                                          ---------->DOF2                                   --------->ARR14(2)          --------->ALFIN1                                <---------ANAC46        <---------WRKY38(1)                 <------NtERF2  <---------ANAC58        <---------WRKY12         --------->ALFIN1       <---------ANAC58       --------->WRKY18(1)--------->At4g35610      --       <---------O2            <-------TEIL       <---------At4g35610     <---------At4g35610      <-       <---------ANAC46       <---------ANAC46    <---------ZAT2        --------->ZAT18          <---      <------NtERF2         <---------MYB46(3)    --------->At4g35610   --------->ZAT14         <----     <-----------HVH21     --------->ALFIN1       --------->ZAT2  <---------MYB46(3)        <-------- ---->AtLEC2  --------->ATERF1(1)  <---------ARR14(2) <-----------HVH21 <---------ZAT14   <---------At4g35610   gcaaacgcgtcgtggaggcctcgataagagtggtgcgttttctcaaaagaacagctggtcaaggagtgttgttgtgaactgactcaaacttgagctttct  12282200                      <---------ANAC58                         --------------->AGL15      ----------->RAV1(1)                                      <---------------AGL15                - ------->ZAT14    <---------ZAT2                               ====================================== --------ZAT14    --------->At4g35610                   <---------ARR11(3)                     <----- ------------AtSPL3   <---------ANAC58                  --------->ARR11(3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) -----ANAC46      <---------At4g35610                  <---------CCA1(2) ----------->GT1       ------ --DOF2     --------->DAG2                  <<<<<<<<<EIN3     --------->ZAT6             <-----------GT1   gtgtactgcaacaaaaattgagctgcttgcctaagaccatttccaatgtatagttctatatcttactctaaaatggagtaactaatacatttttctactt  12282300  Previous    Next  AGI:  At1g33830.1    Description:  avirulence-responsive family protein / avirulence induced gene (AIG1) family protein. similar to ATPP2-A3 (Phloem protein 2-A3), carbohydrate binding [Arabidopsis thaliana] (TAIR:AT2G26820.1); similar to GTP binding protein [Brassica rapa] (GB:ABK78687.1); contains InterPro domain AIG1; (InterPro:IPR006703) Range:  from: 12279927    to: 12281386    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g33835.1    Description:  transposable element gene. copia-like retrotransposon family, has a 2.9e-12 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element) Range:  from: 12281827    to: 12282277    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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