Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                         --------->ANAC58                                                                       --------->ANAC58                                                                       <---------ANAC55(2)                                                 ------>ZmHOX2a(1)     --------->ANAC55(1)                                             <-----------GT1        <<<<<<<GRF7                                --------->ANAC58--------->TOE2(3)  <-----------HVH21                                --------->ANAC58<---------------AGL15 <---------LBD16                      ------>NtERF2       --------->ATHB51        ----------->HVH21                      --------->LBD16     <---------ICU4          ------>ZmHOX2a(1)                     --------->ANAC58    <---------YAB1         ----------->RAV1(2)                     --------->ANAC58    --------->ICU4         --------->At4g35610             <---- ->MYB46(3)          --------->ANAC46 --------->AHL20(2)        <---------At4g35610         <--------   caatacagcatgtattccttcttccgccatagttaagcaattcattatttccttactgagatagtctcctgacacggatgactcgagcaaacctgtatca  12281000                                                                        <---------At4g35610                                                                        <---------ZAT2                                                                        --------->At4g35610                                                                    --------->YAB1                                 <---------DAG2                  --------->WOX13(1)                        --------->ATHB12                      ------>NtERF2                        <---------ICU4                        --------->LBD16                       <---------ATHB12                      --------->ANAC46                       <---------YAB1                       <---------LBD16                       --------->ICU4                     <-----------GT1       <-----------GT1<---------TOE2(3)                  <-----------GT1--------->ZAT2           ---- -----------AtSPL8   --------->YAB1   <----------DOF2   <---------AHL20(2)        <------ZmHOX2a(1) -CCA1(2)         <----------DOF2<----------DOF2  <---------ANAC46 <---------ATHB12              ----   tgtacaatgttacattctgactttaatgatttcaacttttcttttggcaatggtgtattttatccgccaatcacagctgtaataggactatttttagaca  12281100                                        <---------YAB1                                       <---------TOE2(3)                               <---------ANAC46                             <---------ANAC46                             <------MYB83                                              <------ZmHOX2a(1)                             <------MYB46(1)                                        <---------LBD16                             <---------ANAC58                                       <-----------RAV1(2)                            --------->MYB46(2)                                 <----------TaMYB80                            --------->MYB111(2)                               --------->ARR14(2)                            <---------AtMYB61                                 ---------->TaMYB80 ----                          <---------MYB52(1)                                  <---------ARR14(2)<---- ----->ANAC58   --------->AHL20(2)   <---------AHL20(2)                    <---------ANAC46   ------- ----->ANAC58 <----------DOF2<---------ANAC58          <----------DOF2     ----------->GT1<---------ZAT6   aacaattcccaaatgactttaaatgccagtttggtgtatataatgttagaactaagactttatatgaagttttaatggagtatataccaggagtgtcaat  12281200      <---------ICU4                                     --------->ARR14(2)      --------->ATHB12                                   <---------ARR11(3)                        --     --------->ICU4                                      --------->ARR11(3)                       <--     <---------YAB1                                      <---------ARR11(1)           --------->ARR11(3)   --------->YAB1                                        <-----------ARR10            <---------AHL20(1) ----->YAB1                          <---------ARR11(3)  <---------ARR14(2)           --------->AHL20(1) -----ATHB12                         --------->ARR11(3) <---------CCA1(2)             <---------ARR11(3) -->WOX13(1)             ---------->DOF2   --------->REM1(1)               <-----------GT1  <--------   cacattgattattgggccatcttctattaaagctctgaacatcttacatctctggtccatatctcttccaaacaaatttacttcgaaatatttttcaccg  12281300                   <---------DAG2                   <----------DOF2                                                 --------->ATHB51              <---------At4g35610                                                 --------->ICU4              --------->ABI4(2)                                          <---------At4g35610           --------->LBD16                                               <---------ZAT2          --------->LBD16                   <------ZmHOX2a(1)            --------->ZAT2 ------->YAB1--------->ALFIN1           --------->TOE1(2)               ------>ZmHOX2a(1)    -------- -------ATHB12<---------ZAT2       --------->SPL7            <---------bZIP60(2)<---------------AGL15 ---GT1  <---------LBD16      <---------------------WRI1  ----------->HVH21     --------->YAB1   atgatggtgttcccggtgctgctttttccattttcgctacgacctaggagaagtaagtttgtaacggggcattcctgctcagccataatttgaaaaccac  12281400                         ------>ZmHOX2a(2)                         <-------TEIL                        <------ZmHOX2a(2)                       <---------ARR14(2)                       --------->ARR14(2)                    --------->ANAC46                    --------->ANAC58                    --------->ANAC58     <---------AHL20(2)                   <---------LBD16       --------->AHL20(1)        --------->AHL20(2)              <-                  <---------AtLEC2       --------->AHL20(2)        <---------AHL20(2)             <--                 --------->ZAT14         <---------AHL20(1)    <---------RVE1(1)                <----                 <---------ZAT14        <---------AHL20(2)    --------->ARR11(3)             --------                 <---------REM1(2)      --------->AHL20(2)    <---------ARR11(3)            --------- ->MYB46(3)  <-----------GT1   <---------ZAT6--------->AHL20(2)<---------CCA1(1)           ----------   caagacgttgctaattttctgcacggatccatagtattacaaataaattatacatgaacaaatagatatttaaaatgaagaatgaagagaagaaaaagtt  12281500                               ------>ZmHOX2a(2)                             <---------ARR14(3)                             --------->ARR14(3)            --------->ANAC46 <---------ARR14(2) --------WOX13(1)      <---------MYB52(2)    <---------ATHB12 ----------CBF ------>MYB46(1)<------ZmHOX2a(2)                                        --------->ATHB12 -----AHL20(2) ------>MYB83  --------->ARR14(2)                                       --------->ICU4 --->GT1   --------------->AGL15 ----------->GT1                                    <------------CBF >DAG2    --------->REM1(1)  <---------ARR11(3)  --------->ANAC46          --------->ARR11(3) >DOF2   <---------ZAT14     --------->ARR11(3)--------->MYB52(1)          <---------ARR11(3)  <-----   aattggtagactacaccaaatgggaactcacgatcttgtaaaaactaatcaacgaagcagttcaagactaaatagaagacattttgtattgatttggctt  12281600                   <---------AHL20(2)                                                            ----                 <---------YAB1                                                                <-----              <---------MYB52(1)                                                               <-----             --------->TOE2(3)                --------->ARR11(3)      <---------TOE2(3)        <-----       <----------DOF2             ------->TEIL               <-------GAMYB           <---------YAB1     --------->At4g35610  <-----------HVH21 <---------YAB1   ----------->GT1<-----------GT1    <----- -----DOF2  ----------->GT1   --------->At4g35610            <---------MYB46(3)   --------->AHL20(2)   tgaaaacagctatatcgttatttttatgtgtcatatgaatttgtttatgattttgtactagtgtggttaatttaggtgttacaatattatgcatataacg  12281700                                                                                        <---------ICU4                                                                                        --------->YAB1                                                                                       --------->ICU4       --------->MYB52(1)                                                              <---------YAB1    --------->ANAC58                                                              ----------->GT1    --------->ANAC46                                                            --------->ICU4    --------->ANAC58       <----------ID1                                    --------->AHL20(2) ----->ALFIN1            ---------->DOF2       <------ZmHOX2a(1)           <----------DOF2 <--------- ----ANAC58             ---------->DOF2<---------DAG2                      <---------------AGL15 ----ANAC58  ---------->DOF2    --------->ANAC58                           --------------->AGL15 ----ANAC46--------->At5g28300  --------->ANAC58                     <------------CBF<---------ICU4 ----bZIP60(2)       --------->YAB1    <----------DOF2       <----------DOF2 <---------AHL20(2)   tggaacaagaaacggtaaaggaatcagaaaggccaagacaactttatgaggagtgagagacaacttttgagcattgactttaattagtaattataaccta  12281800                                         <---------AHL20(2)                                       <---------AHL20(2)                   <---------YAB1    <---------AHL20(2)              ----------->GT1       <---------AHL20(1)              --------->ALFIN1<---------ZAT2                                  --------->YAB1            <---------ANAC58  <---------At4g35610           <---------HSFB2a(2)            <---------ANAC58 --------->ANAC58               --------->HSFB2a(2)            <---------ANAC46 --------->ANAC58        <---------TOE2(3)       <---------YAB1  -------- --GT1---------->DOF2      *TSS    <---------CCA1(2) <---------YAB1      ----------->GT1    ---------   tagccatctaaagggggtgtgatttttgtgcaagctcatatatttttttgaaattgagattgctcgaagtcaagaaggtatcatggtgacacaaaaaagt  12281900  Previous    Next  AGI:  At1g33830.1    Description:  avirulence-responsive family protein / avirulence induced gene (AIG1) family protein. similar to ATPP2-A3 (Phloem protein 2-A3), carbohydrate binding [Arabidopsis thaliana] (TAIR:AT2G26820.1); similar to GTP binding protein [Brassica rapa] (GB:ABK78687.1); contains InterPro domain AIG1; (InterPro:IPR006703) Range:  from: 12279927    to: 12281386    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g33835.1    Description:  transposable element gene. copia-like retrotransposon family, has a 2.9e-12 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element) Range:  from: 12281827    to: 12282277    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version