Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            --------->ANAC58                             --------->YAB1       <---------YAB1    <----------DOF2         <---------YAB1--------->ANAC46    <---------DAG2        <----------DOF2 --------->ANAC58                               --------->YAB1 >GT1                <-----------GT1    <---------ALFIN1                          --------->LBD16   agattactttttgtaaatgaaattttcgctattatggtgttcccacggtattcttataaaactaaatcccgtttcattttcttccgaataaacatagttt  12188500                                                        --------->AHL20(2)                                                        --------->AHL20(1)                                                        <---------AHL20(1)                                                    <---------AHL20(2)                                                    --------->AHL20(2)                                                --------->AHL20(2)                          --------->AHL20(2)    <---------AHL20(2)                        <----------DOF2        <---------AHL20(1)                        --------->TOE2(3)      <---------AHL20(2)                ---------->DOF2                     <-----------GT1           --------->AHL20(1)          --------->AHL20(2)                     <---------AHL20(2)        --------->AHL20(2)        <----------DOF2   ------>ZmHOX2a(1)    xxxxxxxxxxxxxxxx>smallRNA(i)      ------>ZmHOX2a(1) <---------AHL20(2) <---------AHL20(2) -------   ctaagagcatctacattgcatatttactttaaatgttttcctacttaaatttaattaataaaataagaagaggctctttaaatgaaagacatccttctaa  12188600                                                                               --------->AHL20(2)                                                                               <---------AHL20(2)                                                                             <-----------TBP                                                                            <---------ICU4                                                                           --------->ICU4                                                                         --------->YAB1                                      ------>ZmHOX2a(2)               --------->YAB1                                    --------->ARR11(3)           <---------AHL20(1)                                    <---------ARR11(3)           --------->AHL20(2)                                <---------ICU4             --------->YAB1--------->AHL20(2)                                --------->YAB1      --------->ZAT6  <---------YAB1                 --     ---------->DOF2         --------->YAB1   --------->AHL20(2) --------->AHL20(1)     --------->ANAC58 -->HSFB2a(2)               --------->AHL20(2)<---------AHL20(2) <---------AHL20(2)     --------->ANAC58   aatgtctcaaagaaaacattttgagacacattaaaaatgatcttccatttaaaaacactattcatattttattaataatatttatatgggaagacacaaa  12188700                                           ------>ZmHOX2a(2)                                         <---------ARR14(2)                                         <-----------ARR10                                         --------->ARR14(2)            ------->MYC3                                 ----------->HVH21                     <-------MYC2                               --------->ANAC58                        <-------MYC3                               --------->ANAC58   ----------->TBP      ------->MYC2                            <------NtERF2<---------ARR11(3)         <---------ALFIN1            -----                          --------->ANAC46<------ZmHOX2a(2)      --------->PCF2     ----------->GT1 <                         <---------LBD16 --------->GLK1(2)  <------------CBF      -------------------                      ---------->DOF2    --------->ARR11(3)<---------ICU4<-------TEIL           -----                    <---------ARR11(3)--------->ANAC58   --------->ANAC55(2) <-------MYC3       ----- ------->AHL20(2)   --------->ARR11(3)--------->ANAC58   <---------ANAC55(2) ------->MYC3      ------   aaaaaatatggtctaatagcaagataacgcggcaagtgacaaggatctatctatatatcacttattgctcccacatgcatatggatttgtaaaaatcgtt  12188800                                                                             --------->MYB46(3)                                                              ------------>CBF                                                        <---------GLK1(2)  ----------->RAV1(1)                                                        <---------ANAC58 --------->LBD16                                                 ------------>CBF      --------->ANAC46 ---->WRKY45                                     --------->MYB46(3)  --------->ANAC46 ----------DOF2                                --------->MYB52(1)    <---------ALFIN1 -->WRI1                                     <---------MYB52(2)    --------->YAB1      <---------ATHB12 ---->WRKY12                                --------->At4g35610   <---------ATHB12 ------------>CBF ---->WRKY38(1)                      <------------CBF   <---------ANAC58--------->ANAC46     <------- --->DOF5.7(2)          <---------CCA1(2)   <---------At4g35610 --------->WOX13(1)--------->YAB1   gactttgacttcgtagccctcaagtcgtctctctccctctattgatagctaaccaatagcttctctcaatcacaccgcaacaaatcacaatgaattcact  12188900                                                                  ------->PIF5                                                                  <-------PIF5                                                                  <-------MYC4                                                                  <-------MYC3                                                                  ------->MYC2                                                                  ------->MYC4                                                                  ------->MYC3                                                                  <-------MYC2                                                                 <<<<<<<<<<HY5                                                                 --------->bZIP60(2)                                                                 <<<<<<<<<<AtMYC2                                                                 <<<<<<<<<<ABI5                                                                 <---------TGA1a                                                                 ====================================                                                                 ====================================                                                                 --------->TGA1a                                                                 <--------ABF1                                                                 --------->O2                                                                 <---------O2                                                                 --------->ANAC55(2)                                                                 <---------ANAC55(2)                                                                <<<<<<<<<<<<AtMYC2                                                               <---------ALFIN1                                                             ------>NtERF2                                                             <-----------------PIF3(1)                                                             <-----------HVH21                                                            >>>>>>>>>AtERF-3                                                            >>>>>>>>>AtERF-4             <---------ARR14(2)                                                           --------->ATERF1(1)           --------->ARR14(2)                                                          <---------At4g35610           <------NtERF2                                                          <---------ZAT2               <---------MYB46(3)                                                          --------->ZAT2              <---------ANAC46                                                          <---------ATERF1(1)         <---------ANAC58                                                          --------->At4g35610    <---------bZIP60(2)                                                         --------->ARR14(2)      <---------O2                                                         <---------ARR14(2)   ----------->TGA1                                                       --------->LBD16        ----------->HVH21    <-                                        --------->ICU4=====================MYC_MYB    --------->ALFIN1 ------>ZmHOX2a(1)            <---------DAG2          ------->GAMYB        ------>ZmHOX2a(1)<-------- ----GT1                   <-----------GT1           <---------LBD16<-----------HVH21 <---------ANAC58   ctccttcactctcttcatattttctgtcattacctttctacaatgtttaagttcaaccggagctgccacgtgtcatcctgatgacgaggcgggtctttta  12189000                          ------>ZmHOX2a(1)                        ------>ZmHOX2a(2)                      <---------GLK1(2)                      --------->ARR11(3)                      --------->ARR14(2)                      <---------ARR11(3)         ----------->GT1<---------HSFC1(2)         --------->LBD16--------->HSFC1(2)     --------->ARR14(2) <---------HSFB2a(1)                                       <---------YAB1     <---------ARR14(2)<------ZmHOX2a(2)                                      ----------->GT1 ==bZIP_DOF           <---------ARR14(2)                                     --------->DAG2       --- ==bZIP_DOF           --------->ARR14(3)--------->At4g35610            <-------PIF5            ------ ---------DOF2  --------->ZAT6          <---------At4g35610            ------->PIF5--------->ATHB12 < --DOF2<---------LBD16<---------ARR14(3)<---------ZAT2             <---------At4g35610    <----------DOF2   gctttcaaatccggtataacacaagatccttcgggcatgctcagctcttggaagaagggtacttcttgctgctcgtggaaaggtatcatttgctttaaca  12189100                                                           --------->LBD16                                                           ------>NtERF2                                                   <-----------------AGL1              <---------ANAC58                  --------->KAN4(2)              <---------ANAC58                 <---------HSFC1(2)     <-----------HVH21                         <---------HSFB2a(1)     <-----------TGA1                          --------->KAN4(1)                              -------    --------->bZIP60(2)                        <---------KAN4(1)                    <---------ALFIN1<    --------->O2                     ---------->DOF2     <---------LBD16 <-----------HVH21    -------    --------->ANAC46         --------->GLK1(1) --------->HSFB2a(1)      --------->DEAR3(1)  <-------- -------->HVH21              <---------GLK1(1) --------->HSFC1(2)     <---------At5g28300  <---------At4g35610 --->ZAT6   <---------YAB1 <------ZmHOX2a(1)  --------->SPL7 <---------ALFIN1  --------->ANAC58     < ---------At5g28300      <---------TOE1(2)    ------->TEIL--------->ANAC46     --------->ANAC58  ----   gtgaccgcgtcaccatgcttgaactagtaggatttcccaaaaaacccgaacgttccctctccggcactctctcaccgtcgctagccaaactccagcacct  12189200                                              <---------TOE1(2)                                             ------>ZmHOX2a(1)                                       <----------DOF2                                      ==============HOX2a_HOX2a                                      ------>ZmHOX2a(2)                                    <---------ARR11(3)   --------->ATHB12                 <---------ARR14(2)                                          <---- -->ANAC58                          --------->ARR11(3)                                --------->AtLEC2 ---------ANAC58     <---------ANAC55(2)    --------->TOE2(3)                <-------TEIL       <---- -->ANAC58    <------ZmHOX2a(1)     --------->ARR14(2)                   <---------------AtSPL8<----- -ALFIN1--------->At4g35610         <---------AGP1                       <---------TOE2(3)    <------ ---------ANAC58 <-----------HVH21 <---------CCA1(2)                     <---------TOE1(3)    ------- ------>CDC5  ===============================HOX2a_HOX2a          ---------->DOF2--------->WRKY12----   aagcgtgattagcttaggaggtcatgtgaacatcactggatcttttcctaagttccttctccaattaccaaagctaaggtacgttgacatccaaaataac  12189300         <---------WRKY12         <---------WRKY38(1)                                                           <---------HSFB2a(2)         <---------ZAT18                                                               --------->HSFB2a(2)      --------->LBD16        <---------ANAC58                                      <---------ALFIN1    <---------LBD16          <---------ANAC46                                   <---------TCP20 --------AtMYB77 ------>NtERF2                                --------->ANAC58  <---------TCP15(1) --------MYB.PH3(1)          <---------ANAC58                 --------->ANAC58  --------->PCF2 ----At5g28300   --------->LBD16                   <---------ARR11(3)          <-----------HVH21 -----GT1<-----------------AGL1                    --------->ARR11(3)    --------->ZAT14 -->MYB52(1)   <---------LBD16                    <---------GLK1(1)      <---------ZAT14 --->GAMYB<---------ALFIN1<---------DEAR3(1)      --------->GLK1(1)      --------->ZAT18--------->LBD16   cgtctctccggtccacttccggctaacatcggcgtgctaagcttgttggaagaaatctttcttcaaggaaataagttcaccggtcccatcccgaactcga  12189400  Previous    Next  AGI:  At1g33610.1    Description:  leucine-rich repeat family protein. similar to disease resistance protein-related / LRR protein-related [Arabidopsis thaliana] (TAIR:AT1G33590.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44580.1); contains InterPro domain Leucine-rich repeat, N-terminal (InterPro:IPR013210); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype (InterPro:IPR003591) Range:  from: 12188890    to: 12192829    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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