Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  --------->AHL20(1)                <---------AHL20(1)                <---------AHL20(2)                --------->AHL20(2)                                                         <---------YAB1                <---------ARR11(3)                                                      <---------AHL20(2)         ----------->GT1                        <---------ANAC55(2)                     --------->AHL20(2)    <---------AHL20(2)                        --------->CCA1(2)                         --------->AHL20(1) --------->TOE2(3)                            --------->GLK1(1)                         <---------AHL20(1) ----------->GT1--------->ARR11(3)           <---------ARR14(2)                     <---------YAB1 ---------->GT1--------->AHL20(2)            --------->ARR14(2)           <----------DOF2<---------AHL20(2)   aaatgttaaaatgctaaatatattcagtagttcaacttattttgagggatatgtaaactaaaaaaaaaaaaaaactcttttgagctataatttaatattg  12144100                               <---------ARR11(3)                               --------->ARR11(3)                   --------------->AGL15                   <---------------AGL15                                           <---------AHL20(2)                   ==================================================================================                   --------->AHL20(2)                                           --------->MYB52(2)               <---------AHL20(2)       --------->MYB52(2)      ------->TEIL    ----------->GT1               --------->AHL20(2)     <---------MYB52(1)   <---------ANAC46   <--------P            ------->TEIL      <---------CCA1(2)  <---------AHL20(2)           <---------MYB52(1)-----     --------->AHL20(2)   ----------->GT1      <---------AHL20(2)            <-------GAMYB --------->MYB52(1)   gtcaaaaaaaaatgtatttttttatatatagtatatctctgttagttatatttttttttttttgtgtatgttatttctcggttagttatttgctaaggga  12144200                  <----------DOF2                  --------------->AGL15                  <---------------AGL15                 <-----------------AGL3                 <-----------------AGL2                      --------->ARR11(3)               <---------ARR14(2)                            <---------GLK1(2)             <---------AHL20(2)               --------->ARR11(3)                            <---------ARR11(3)           --------->AHL20(2)               <---------ARR11(3)         ----------->GT1  <---------TOE1(3)              <---------AHL20(2) ==================================MADS_MADS               <---------TOE2(3) ---------->DOF2   ------ ----->DOF2   --------->RVE1(1)  --------->AHL20(2)    --------->YAB1     --------->AHL20(2)  <------   aagttttttttgttgaatatctttttttggtagaattaaaaatacagaaaatttcaattttaagattttccaccaatataaaagaccaaaaattaaataa  12144300                                                        --------->ANAC58                                                        ----------->GT1                                                        --------->ANAC58                                                     ------>MYB83                                                     -------->P   <---------ZAT14                                                     ------>MYB46(1)                                                    ----------->RAV1(1)                                                   --------->AtMYB61                                               <---------ETT(1)   <---------ZAT18                                              ------>ZmHOX2a(2)   --------->ZAT18                                              --------->DEAR3(2)  --------->ZAT14                 ---                                             <------ZmHOX2a(2)   ----------->GT1     --------------->AtSPL3      <---------AHL20(2)                    --------->ARR14(2)  --------------->AtSPL8           ----      --------->AHL20(2)                    <---------ARR14(2)  <---------------AtSPL8   <-------TEIL    --------->YAB1                <-----------GT1 --------->MYB46(3)                 --------------->AtSPL8 --->YAB1             --------->At5g28300 ----------->ARR10   --------->DAG2      ----------->HVH21 ---AHL20(2)         ----------->GT1     --------->ALFIN1    ---------->DOF2 --------->ANAC46--------   tagctaaaataaatgttttccaactgtaaatctattttacagagtggatccgaccaacaagaaaaaagtgtacaaaaacacacagtgaccgtacataaaa  12144400             --------->YAB1                       --------->ALFIN1                                ---          <------------CBF            <---------AHL20(2)                    <---------LBD16   <------        <---------YAB1                --------->AHL20(2)                    ----------->RAV1(2)*TSS  --------->AHL20(2)                  <---------ATHB51       <---------ARR14(2)          <---------ANAC58 ------>AHL20(2)                  --------->AHL20(2)         --------->ARR14(2)          <---------ANAC58 ----->AHL20(2)         ---------->DOF2   ------------>CBF   <---------GLK1(2)--------->LBD16 ------- ->AHL20(2)<---------WOX13(1)  ----------->GT1<---------ATHB12       <----------DOF2<----------DOF2   taaaaaaaatgtcattgatatttgtgaaaagctaagttaaataattcaatgagtgtgtccccaaattctctcttttttccctgagacttttccttgaatc  12144500                                                                            <----------DOF2                                                                        --------->ARR14(2)                                                                      --------->LBD16                                                                  --------->ARR14(2)                                      --------->MYB52(1)          <---------ARR14(2)                                      <---------At5g28300        ---------->DOF2                                     ------->GAMYB             <---------------AGL15                                     --------->MYB55(1)        --------------->AGL15             <---                                    --------->MYB46(3)        ----------------->AGL2         <-------           ------>ZmHOX2a(1)        <---------MYB52(2)        ----------------->AGL1        <--------        ------>ZmHOX2a(1)           <---------MYB111(2)       <-----------------AGL3      <---------HSFB2a(1)       <---------ALFIN1             <---------MYB46(2)        ----------------->AG        <---------HSFC1(2) --->ZmHOX2a(1)                     <---------MYB55(2)        <-----------------AGL1      --------->HSFB2a(1) ---ARR14(2)                <---------CCA1(2)    <---------At4g35610<---------LBD16<---------ANAC46 -->ARR14(2)              <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  ----------------->AGL3      --------->HSFC1(2)   ctcttccctcctccttcttctctctctctcgtttctcaactaccgtctctctgcttcttctgttcccaaaaccggaaactttacttcgtggaattttccc  12144600                                                                                                    -                                                      <---------------------WRI1                  <--                                                   <---------ANAC58                               ---                                     <---------MYB46(3)          ---------->DOF2                  <--                                     --------->MYB55(2)       --------->ANAC58                   ---- ------MYB52(1)              ---------->DOF2 <------ZmHOX2a(1)--------->ANAC46        <----------DOF2 ----GT1           ----------->RAV1(1)<-------GAMYB<---------ANAC58         <---------LBD16    <----- ---GT1         --------->ANAC46     --------->MYB52(2)       --------->ANAC58 <------ZmHOX2a(1) ----   ttgtttctgaaatggaagacacaacatttaccaaagtgttcgttggaggattagcttgggaaacacacaaagtctctctcaggaattactttgaacagtt  12144700                                                 ---------->DOF2                                               ------>ZmHOX2a(2)         <---------REM1(1)                    <------ZmHOX2a(2) ---------->HVH21                            --------->ARR11(3) ----MYB83                                   <---------ARR11(3) -------->GT1               --------->YAB1   --------->AGP1  --------------------->WRI1 ----MYB46(1)--------->At4g35610             <---------AGP1  <----------DOF2 ----->MYB111(2)        --------->ZAT6       <---------ARR14(2)           <<<<<<<<<TBF1         <---- ----MYB52(1)<---------At4g35610          <--------P        <---------ANAC58             <----------DOF2 ----->MYB46(2)        <---------YAB1  <---------ZAT6       <---------ANAC58 <<<<<<<<<TBF1   <-------   tggtgacattgttgaagctgtcgttatcactgataaatctagtggtagatctaaaggctatggctttgtaagtttcttcttcttcttgtttctttttact  12144800                                                                                                  <--                                                                                                  ---                                                                                                  ---                                                                                              <------ZmHOX2a(2)                                                                          <---------At4g35610 =======                                                                          <---------ZAT2     --------                                                                          --------->ZAT2     --------                                  <---------MYB52(1)               --------->LBD16  <---------ANAC58                             --------->ARR14(2)        <----------DOF2    --------->At4g35610--------                         --------->ANAC55(2)           <---------DAG2  <---------At4g35610   <-------   --------->ARR14(2)   <---------LBD16          ----------->GT1  --------->HSFB2a(2)      ----------   <---------ARR14(2)  --------->MYB52(1)       <---------TOE2(3) <---------HSFB2a(2)   <---------ANAC46 ------DOF2         <---------At4g35610         <---------TOE1(3)------>ZmHOX2a(2)  <---------ANAC58 ----GT1<---------YAB1----------->HVH21       ---------->DOF2    <---------LBD16---------->DOF2   <--   ttggagatttgttatagcttcaagctcacgggttctgttttttttttgtaaaggttactttttgtgatccggaagcagctcagaaagcttgtgtagatcc  12144900   ------>ZmHOX2a(1)                                      ========================HOX2a_HOX2a -------At4g35610                                         <------ZmHOX2a(2) ------>At4g35610                                         --------->CCA1(2) ------>ZAT2                                             <---------ARR11(3) =========HOX2a_HOX2a                                    --------->ARR11(3)                <---------TOE2(3) ->ARR11(3)                                             <---------GLK1(1)                  <---------TOE1(3) ->AGP1                                                 --------->GLK1(1)      --------->YAB1 ->ARR14(2)                                        <---------ZAT14         ------>ZmHOX2a(1) --ARR14(2)                                  <---------AtMYB61             <---------------AGL15 ->ARR10                              <-----------------AGL2    --------->HSFB2a(1)    <----------DOF2 -------ZAT2                --------->YAB1<----------DOF2--------->AGP1   <-----------------AGL3   agctcctgttattgatggaagaagagctaattgtaatcttgctgcttttggtgttcagagatccaaaccttcttctcctattcatggtacttttaggttt  12145000  Previous    Next  AGI:  At1g33470.1    Description:  RNA recognition motif (RRM)-containing protein. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT1G22910.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO44510.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 12144495    to: 12147188    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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