Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             <---------------AGL15           ------>ZmHOX2a(1)           --------------->AGL15          <-----------------AGL3   --------->ANAC58              <---------ZAT2   --------->ANAC58              --------->At4g35610 ---------->DOF2                 --------->ZAT2                                           ---------->DOF2 ------>ANAC46        <---------ARR14(2)--------->At4g35610                             --------->ANAC58 ------>ANAC58       <---------GLK1(1)  <---------ZAT2                                  --------->ANAC58 ------>ANAC58       --------->GLK1(1)  <---------At4g35610                           --------->MYB52(1) -->DOF2  <-----------------AGL2 <---------At4g35610                          <---------GLK1(2)  <---   acgaaacgcagtcctgttattggaaatccagacttagctgagagctgaagaagctcgagagcatttggactcgtcttgttgattctccaaacgaaagaga  12118600        --------->LBD16    <---------ARR14(2)    --------->ARR14(2)  --------->HSFC1(2)  <---------HSFB2a(1)  --------->HSFB2a(1)                           <---------ZAT2  <---------HSFC1(2)                            --------->At4g35610 <---------TOE2(2)                              <---------At4g35610                       <---------HSFB2a(2) <---------TOE1(2)                       ---------->DOF2                --------------->AGL15 ---ZmHOX2a(2)    --------->AGP1<---------ZAT6  --------->ZAT2      ------>ZmHOX2a(1)     --------->HSFB2a(2)   tcgaaggttccccaattacagagctagaagcgtagtcttcagacaaaggaagctgaacacactcattgtcctcacttgaattagcaccgatactagaaga  12118700                                                          --------->At4g35610                                                       <------NtERF2                                                      --------->LBD16                                                      --------->ANAC58                                                      ------>NtERF2                                                     --------->RRTF1(2)                                                     --------->DEAR3(1)                                                     --------->RAP2.6(2)                                                     --------->RAP2.3(3)                                                     --------->RAP2.3(2)                                                     --------->DREB2C(2)                                                     <---------ATERF1(2)                                                     --------->ATERF1(2)                                                    --------->ORA47(2)                                                    --------->ATERF1(1)                                                    --------->ERF1                                                    --------->RRTF1(1)                                                    <---------LBD16                                                    <------NtERF2                                                   --------->ABI4(1)                                                   <---------RAP2.3(1)                                                   ------>NtERF2                                                  --------->ATERF1(2)                                                  --------->RRTF1(2)                                                  --------->RAP2.3(3)                                                  --------->RRTF1(3)                                                  --------->DEAR3(1)                                                  <---------ATERF1(2)                                                  <---------DEAR3(1)                                                  --------->RAP2.3(2)                                                 --------->RAP2.6(1)                                                 --------->RRTF1(1)                                                 --------->ATERF1(1)                                                 --------->RAP2.3(1)                                                 --------->ORA47(2)                                                 --------->DEAR4(2)                                                 --------->ERF1                                                <---------At4g35610                                                --------->At4g35610                 --------->ARR14(2)                                                ------>NtERF2                       <---------GLK1(2)                                                <---------RAP2.3(1)             <------NtERF2                                                <---------ATERF1(1)            <---------ATERF1(1)                                                --------->LBD16                --------->MYB52(1)                                               --------->ANAC46                ------>NtERF2                                    <-----------GT1<---------ATERF1(1)        --------->DEAR3(1)                        --------->TOE2(3)     <---------LBD16                 ----------->HVH21                      --------->ARR11(3)    <---------ARR14(2)               --------->SPL7                      <---------ARR11(3)    --------->ARR14(2)             <---------SPL7                     --------->GLK1(1)     <---------GLK1(1)   --------->ARR14(2)   <---------ARR14(2)                     <---------GLK1(1)<---------bZIP60(1) <---------At4g35610--------->DEAR3(2)                     <---------RVE1(1)--------->bZIP60(1) <---------ZAT2  <---------RAP2.6(2)       -                    <---------ARR11(3)--------->ANAC46--------->ANAC58   --------->DEAR3(2)  --------         --------->ALFIN1          ----------->HVH21--------->RAP2.3(1) --------->MYB52(1)   <-------      --------->DAG2--------->ARR11(3)--------->ETT(2)<---------ATERF1(1)--------->RAP2.6(3) <-------   tgaaacagaaggtgaaggaacagatatctcaatccatttgacgacatttccgccgccggcaactggaacttccataccggccgacggattccgacgattc  12118800                                                                                   --------->ATHB12                                                                                  <---------YAB1                                                                                  <---------AHL20(2)                                                                           ------>ZmHOX2a(2)                                                                          <------ZmHOX2a(2)                                                                         <---------AGP1                                                               <---------TOE2(3)<---------ICU4    ---                                                              ---------->DOF2  --------->ICU4     ---                                                      --------->ATHB12   --------->AGP1          <---                                                      <---------ICU4     --------->ARR14(2)     -----                                                     <---------ATHB12    <---------ARR11(3)     -----                                                     --------->ICU4      --------->ARR11(3)    <----- ----->ZmHOX2a(1) --------->TOE2(3)                  <---------YAB1      <-----------ARR10     ------ ->ARR14(2)       --------->TOE1(3) --------->ZAT14 <---------TOE2(3)    <---------ARR14(2)    ------ --ARR14(2)     ------->TEIL     <<<<<<<<<TBF1    --------->AHL20(2)    <---------CCA1(2)    -------- --GLK1(2) <----------DOF2 <----------DOF2        <---------AHL20(2)  --------->YAB1<------------CBF   tcctccatttcttctttgaaccctaaacccttttcttcttcactcggacgaattaatgattttttaaagtaatcagatctaatttttattgggcctagat  12118900        <---------TOE2(3) <-----------------AGL1 ------>ANAC58 ------>ANAC58 ----TEIL                                    <---------TOE2(3)     --------->YAB1 ---->CCA1(2)                               <-----------GT1        <---------ICU4 ---->ARR14(1)                              --------->MYB52(1) >>>>>>>>>GT-1 ----ARR14(2)                        ------>MYB46(1)        <---------MYB46(3)          --------->ARR11(3) --->ARR11(1)                        ------>MYB83           ----------->GT1    --------->LBD16 --->ARR14(2)     <---------ANAC58   --------->MYB52(1)  <----------DOF2 <----------DOF2<---------ARR11(3) --->ARR10        <---------ANAC58 <---------MYB59    <-----------GT1   *TSS <---------LBD16   <-----   acggcccatttaggcttcgtacttgtgaaactgaaaacctaactattaacgaaatttaactttggttaataatctctttccctgaacaaatgtcttcttg  12119000                 <---------ANAC58                                                 <----------DOF2   ----------->HVH21                                                     <---------O2   --------->DEAR3(1)    <<<<<<<<<TBF1                          ---------->ID1  <---------At4g35610  <---------At4g35610 <<<<<<<<<TBF1                    <<<<<<<<<TBF1   <-----------GT1 ------RAV1(1)   <---------ANAC58         <---------GLK1(2) <----------DOF2   <---------RAP2.6(2)----   ttgcagcgacgatgctattgcttcttcttcttcatcttcttcacgattcttctcttcttcttctttatcgttttcacatggctgcttctagtgccaaaaa  12119100                                         --------->KAN4(2)                                        --------->KAN4(1)                                        <---------KAN4(1)                               --------->GLK1(2)                              --------->ARR11(3)                              --------->ARR14(2)                              <---------ARR14(2)                              <---------GLK1(2)                              <---------ARR11(3)                             <---------HSFB2a(1)                             --------->HSFC1(2)                        --------->ANAC58<---------HSFC1(2)                      <---------ICU4                        --------->ANAC46--------->HSFB2a(1)                     --------->YAB1                        --------->ANAC58--------->HSFC1(2)             --------->ETT(2)                 <---------GLK1(1)      <---------HSFB2a(1)            <---------ETT(2)                 <---------At4g35610   <---------KAN4(2)              <------NtERF2          --------->CCA1(2)  <---------HSFC1(2)                      ------>NtERF2         --------->ARR11(3)  --------->HSFB2a(1)                     <---------RAP2.6(3)          <--         <---------ARR11(3) ----------->ARR10<----------DOF2        <---------ANAC46              <-- ----->ATHB12    --------->At4g35610   <---------TOE1(2)      <---------ATHB12 --------->ICU4 <------   cattggagaaagatactagagctcccaaggaagattcttcgaatgttcttttttcatcaattcaatcttgccgtcgagagaattatggtcttcgagggtt  12119200                                                                                             <-------                                                                                          ------>ZmHOX2a(2)                                                                                    --------->LBD16                                                                                   <---------ANAC46                                                                    <---------TOE2(3)   --------->ARR11(3)                                --------->WOX13(1)                  <---------TOE1(3)   <---------ARR11(3) -------TOE2(3)               <---------ATHB12          --------->HSFB2a(2)    <---------ANAC58 -------TOE1(3)           <---------RAP2.6(3)           <---------LBD16        <---------ANAC58 -GAMYB                  --------->RAP2.6(2)            <---------HSFB2a(2)  <---------YAB1<---------   agggttttcaattcttatgaagacgagccgaaatcaatctgttgaattcgatgattttctcggatgaatgaaggttgtgatgcttccgtcgatctttggt  12119300                                   --------->TOE2(3)                                --------->ARR14(2)                                <---------GLK1(2)                               <------ZmHOX2a(1)                                                 ----                             <---------TOE2(2)                    --------->ATHB12         <---------ANAC58   --------->ARR11(3)  ===============HOX2a_HOX2a      --------->HSFB2a(1)  <---------AHL20(2)  <---- --AtMYB61             <------ZmHOX2a(2)              <---------TOE1(3)     --------->AHL20(2) <----- -DOF2   <---------TOE2(3)   <---------TOE2(3) ---------->DOF2   <---------YAB1            <---------ANAC58   cgatttatcttgaggtatgaaaccgatcacttaggattcttaaattcttcaaagcgaaggtttttgtatgattcggatttatattgttttgtttcgttcc  12119400                                                  --------->GLK1(2)                                                 --------->ARR14(2)                         ---------  --------->ICU4                                 <---------GLK1(2)                   <---------YAB1  <---------YAB1                                 <---------ARR14(2)                --------->YAB1 ----->LBD16                                <-----------GT1                       <------ZmHOX2a(2) -----ANAC46<---------ARR11(3)       --------->YAB1                              --------->ARR11(3) ----LBD16  --------->ARR11(3)      ----------->GT1                      <<<<<<<<<<<<<<<<<LFY   ggtgaagattacaagttcttgtatgaataccaattgaattgataatttacagattcttagcatagcattcgttctaaacaatggatcatgatactcgcag  12119500  Previous    Next  AGI:  At1g33410.1    Description:  SAR1 (SUPPRESSOR OF AUXIN RESISTANCE1). similar to Os02g0142500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045864.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48903.1); contains domain PTHR21286 (PTHR21286) Range:  from: 12109570    to: 12118808    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g33415.1    Description:  other RNA Range:  from: 12118972    to: 12126573    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version