Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                --------->ATHB12        <------NtERF2      <---------ANAC58      <---------ANAC46      --------->DEAR3(1)      <---------ANAC58     --------->ATERF1(1)     --------->DEAR4(2)     <------NtERF2     --------->RAP2.3(1)    <---------RRTF1(1)    <---------DEAR4(2)    <---------RAP2.3(1)    <---------ERF1    <---------ORA47(2)    <---------ATERF1(1)    <---------RAP2.6(1)    ------>NtERF2   --------->DEAR3(1)   <---------RAP2.3(2)                                                                          -----   <---------RAP2.3(3)                                                                          -----   <---------DEAR3(1)                           --------->At4g35610                             <----  <---------LBD16                               <---------At4g35610     ------->GAMYB      <---------LBD16  --------->ATERF1(1)                       --------->GLK1(2)      <------NtERF2           --------->HSFB2a(2)  <---------ABI4(1)                         --------->ARR14(2)    ------>NtERF2 --------->ARR11(3) ----->WOX13(1)                         ------>NtERF2       --------->MYB52(1)  <---------ARR11(3) ----YAB1 <----------DOF2              --------->ANAC46 --------->At4g35610  <---------KAN4(2) <----- -->TOE2(3)  <---------YAB1         ----------->HVH21---------->DOF2 ----------->RAV1(1)   <---------HSFB2a(2) ->YAB1------>NtERF2         ---------->DOF2<---------ARR14(2)  <---------MYB52(1)------>ZmHOX2a(2)   aatcggcggcgtcttttgattagaactcttcaaaagcctcgacgcgattccgatgaaaagctcaccggtggcaacagcgaatgatctcttgttctcggaa  12070000                                                                                            ---------                                   --------->ZAT14                                         --------->SPL1(1)                                   --------->At4g35610          --------->HSFB2a(2)       <---------SPL7                             --------->MYB52(1)                 <---------LBD16          --------->TOE1(1)                             ------>MYB83 --------->YAB1        <---------HSFB2a(2)      --------->TOE2(1)      --------->DAG2         ------>MYB46(1)                <---------ARR14(2)          --------->HSFB2a(2)     ---------->DOF2         ----------->RAV1(1)            --------->ARR14(2)         <------------- ---->ARR14(2)               -------->P  <---------YAB1     --------->GLK1(1)     <----------DOF2 ---->GLK1(2)               <---------ALFIN1                <---------GLK1(1)     <---------DAG2 -----ARR14(2)             <---------MYB55(2)     --------->MYB52(1)         ---------->DOF2--------- ----GLK1(2)<---------YAB1 --------->MYB46(3)   --------->TOE2(3)        ----------->GT1<---------HSFB2a(2)   tctgtagaaaagttctgattttgagaagacccaccagagcagcatgataacctaagggcgagaattctcggagaaaggttaaagctttttctcgtacgga  12070100          <---------ANAC46          <---------ANAC58 --------->At4g35610 --------->CCA1(2) >SPL7    <---------ANAC58                             <---------GLK1(2) -----SPL14 --------->ALFIN1                    <---------ALFIN1                   --------->DAG2 >SPL1(2)<-----------------------TaNAC69(2) <-----------HVH21                     ---------->DOF2 XXX   gagagatgaatggagtggaacggagagacatcgccatggattaatgggtcacactcagattatttgagggttttgggaatttcgaaaagttagggatttg  12070200                      --------->ANAC46                   <---------ZAT18                 <---------At4g35610                                                        ---------                 --------->ZAT2                                                             ---------                 <---------ZAT2                                                         --------->LBD16                 --------->At4g35610                                                   <---------HSFB2a(2)          --------->YAB1                                <---------LBD16                <-----------RAV1(2)          <---------ICU4                               <---------ANAC58                <---------LBD16         <------ZmHOX2a(2)               ----------->HVH21                             --------->HSFB2a(2)         ===================================HOX2a_HOX2a<---------ANAC58                ==============        <---------ARR11(3)           <------ZmHOX2a(1) <---------ANAC46   <---------DAG2<---------TOE1(2) XXXXXXXXXXXXXXXXXX>MIR2935    --------->YAB1    <---------TOE2(3)        <----------DOF2 <------ZmHOX2a(1)   aaaatcacacgatcatcgcagctcacaaaacactcatgaggatgtgactctatggtttcgtggagaaatttgttaactttatagttctcccaggaagcaa  12070300     ----------->RAV1(1)    ----------->HVH21    --------->ANAC46                                                    <------ZmHOX2a(1)   --------->HSFB2a(2)                                     --------->GLK1(2)   <---------HSFB2a(2)                                     <-----------ARR10 >ANAC58                    --------->YAB1            *TSS<---------GLK1(2) >ANAC58         --------->GLK1(2)          <-----------------AGL3    <---------TOE2(3)         ----- ================RAV <-------GAMYB          <-----------------AGL2 <---------AHL20(2)  ----------->GT1   cgtttcgcgacagagagagactctgttgaatcaaaactctgttcaatctgtttttggagagaatctaattttaaggactgattttaagaaggtcaaaaga  12070400                                                         <---------MYB59                                                         <---------------AGL15                                                         --------------->AGL15                                                        ----------------->AG                                                        <-----------------AGL1                                                        <-----------------AG                                                        ----------------->AGL2                                                        <-----------------AGL2                  <----                                                        <-----------------AGL3        --------->MYB52(1)                  <---------ICU4                        ----------------->AGL3       <---------SPL7       <---------bZIP60(1)                              ----------------->AGL1      <---------MYB52(2)       --------->bZIP60(1)                            <-----------GT1            <---------ETT(2)   < --------->ICU4   --------->ATHB12            ------>MYB83                    ------>ZmHOX2a(1) <---- ------>GT1      <---------YAB1               ------>MYB46(1)           <---------DREB2C(2)  <-------   gtaaatatgatgtgatttgatgatttcggtttctgtttcatccataccaactaaaattaccaaaattggtaatgccggtcctatcgacgaacgaattact  12070500                                <---------HSFB2a(2)                           --------->At4g35610                           <---------At4g35610                           <------NtERF2                          <---------DEAR3(2)    --------->ATHB12     <---------DEAR3(1)    <---------AHL20(2)   <---------RAP2.6(2)                                                       <-   <---------AHL20(2)   --------->DDF1                                ----------->GT1<----------DOF2 ------DOF2      --------->ANAC58                                     --------->ANAC58     --------->At4g35610 ---------AHL20(2)      --------->RAP2.6(3)                           --------->ANAC58     <---------At4g35610 -----DAG2       --------->ANAC58 ---------->DOF2             --------->ANAC58    --------->ARR11(3) ----GT1   ------>ZmHOX2a(2)    --------->HSFB2a(2)           --------->ANAC58    <---------ARR11(3)   ttttatttattgatccaacaagaaatgtcggcttccaaaagtttcaaacttacacttatttgacaagaaaacaagaaaaattgagacctttttagatgcc  12070600                                                               <------ZmHOX2a(1)                                                       <---------AHL20(1)                                                       --------->ARR11(3)                                                     --------->AHL20(1)                 --------->ARR11(3)                                                     <---------AHL20(1)                 --------->AHL20(1)                                                    --------->AHL20(2)                  <---------AHL20(1)                                                --------->AHL20(2)   <---------ZAT6   ------->TEIL         <---------WOX13(1)                     <---------AHL20(2)  <---------YAB1 <---------YAB1----      <---------YAB1                       <-------TEIL--------->AHL20(1) <---------TOE2(3) <-------- --------ATHB12                        <---------------AtSPL8<---------TOE2(3)  <---------AHL20(2)   aatgcttaatgaatgactaatttagtaagtagaagtagcaaggagtacatataaatatatattgaggattagtattagggattttatgaatattttgaat  12070700                                         --------------->AtSPL8                                         <---------------AtSPL3                                       --------->ATHB12                                       --------->YAB1                                       <---------ICU4          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->At5g28300         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->ANAC55(2)         <---------WRKY38(1)          <------ZmHOX2a(2)        <<<<<<<<<<WRKY38              <---------ATHB12                                             --        <<<<<<<<<<WRKY26          <---------ATHB12                                 <---------ANAC58--  --------->ATHB12              --------->WOX13(1)                                 <---------ANAC58<- <---------YAB1               xxxxxxxxxxxxxxxx>smallRNA(i)                    <---------ICU4     ---- <---------AHL20(2)         <---------ZAT6     <---------ANAC55(2)    <-----------GT1         <------ ------->GT1           <-------GAMYB  <---------YAB1           <---------TOE2(3)   <---------ANAC46<- -YAB1  <<<<<<<<<<WRKY43<---------MYB52(1)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    xxxxxxxxxxxxx   agttttattggtcaattctggtttccgttagagtcaatcgatcattgtaccgtaattgtttgtttatggtattaactacataatgtcgtatagtttatgc  12070800                                     <-------TEIL                                  <------ZmHOX2a(1) ----->MYC2                      ----------->GT1                                     <----------DOF2 ----->MYC3           <---------ANAC58                                             <-------TEIL ------MYC2           <---------ANAC55(1)      <---------ANAC58                 <---------ANAC58 --->TEIL             <---------ANAC46         <---------ANAC46         <---------AHL20(2) ---YAB1              <---------ANAC58         <---------ANAC58         <---------YAB1<xxxxxxxxxxxxxx ------MYC3 <-------TEIL        <---------TOE2(3)                       --------->ICU4<xxxxxxxxxxxxxx xxxxxxxx>smallRNA(le3)         <---------TOE1(3)           <---------ZAT14     <---------ANAC58   atgtggtcatgaaatacatatatttcgtgtatataaggatacatttacttcgtgtacatgagtatagtttggatattattagccgtgcatttagtcaaaa  12070900  Previous    Next  AGI:  At1g33270.1    Description:  patatin-related. similar to unknown [Populus trichocarpa] (GB:ABK95138.1); contains InterPro domain Patatin; (InterPro:IPR002641) Range:  from: 12068043    to: 12070354    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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