Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                               <---------YAB1          --------->AHL20(2)                                                             --------->ICU4          <---------AHL20(2)                                                           <--------HAHB4            --------->AHL20(1)                                                           --------->YAB1            <---------AHL20(1)                                                           <---------ICU4           --------->AHL20(2)                                                          <---------ATHB12          <---------AHL20(2)                                                         ------->TEIL           --------->AHL20(2)            --------->YAB1   <-------TEIL             <---------ATHB12          <---------AHL20(2) ----->ANAC58             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)             --------->ICU4 ----->ANAC58    <-----------GT1                    ------>ZmHOX2a(1)  ----------->GT1        -------   aggaaacatcagaatcatataactgatcaagttcatagtcacttcttcaaactcctatgaatcatttttaaaccagtaatttttaaataaattgtgttga  12041400                                                                                                    -                                                                                                   --                                                                                             <-------                                                                                            ---------                                                                                            <--------               <----------DOF2                                                              <--------          ---------->ID1                                    <---------At4g35610             ---------       <---------DAG2                                       <-------GAMYB<---------ATHB12   ---------       <----------DOF2   <---------AHL20(2)                <-----------RAV1(1)              <--------    <-----------GT1     --------->AHL20(2)  --------->AHL20(2)    <----------DOF2     --------->ANAC58 -->WRKY38(1)---------->ID1                 <---------AHL20(2)--------->WRKY38(1)     --------->ANAC58   cttaagttacttttcgtctttttctattaaaaatcaaaccttgtatataaatcgctaatttctgttgactttacaatgaataaaactgaagcaatatatt  12041500       --------->TOE2(3)  <---------MYB52(1) ---------->GT1 -------->ID1                          <---------AHL20(2) --AHL20(2)                     <---------TOE2(3) >AHL20(1)                --------->ATHB12                                                          - -ARR11(3)               <---------YAB1<---------AHL20(1)                                         <-- -AHL20(1)             <------ZmHOX2a(1)                             ------->TEIL                 <-- >AHL20(2)           <---------TOE2(3) --------->AHL20(1)  <----------ID1                  ------>ZmHOX2a(1) >ARR11(3)    --------->At5g28300   --------->AHL20(2)   <-----------GT1       <---------AHL20(2) <-- -AHL20(2)   ----------->GT1    ----------->GT1  --------->ZAT6      <---------TOE2(3)  ------>ZmHOX2a(1)   tgtcgttaatctaaacagtaatttaggatgatttaagttaaaatatttctatcactaatttacgacgaatgaacgttgtattttatattcctcctaaatg  12041600 ---------->GT1                    <---------ANAC46          <---------AHL20(2)       <---------TOE2(3) -------ANAC58                     ----------->GT1<-------GAMYB                 <----------DOF2 -------ANAC46                    ---------->ID1 ----------->GT1             <-----------GT1 -------- -------ANAC58       --------->ANAC46            <---------MYB46(3)         --------->AHL20(2)   ccttgtaaaatggacataagtttacgaaaacattttgtcgtaaaatgttgatggttaatctatttttttgaagtgaaattaactttctaatgttacctag  12041700                               --------->TOE1(3)                               --------->TOE2(3)                               --------->YAB1                              <---------YAB1                        <---------AHL20(2)                        --------->AHL20(2)                       <---------WOX13(1)                     --------->ATHB12                    --------->ICU4            --------->TOE2(3)--------->ARR11(3)       <---------AHL20(2)    <---------ARR11(3)            *TSS   ---------->DOF2       --------->AHL20(2)   --------->YAB1 --------->REM1(1) ----------->GT1 ------->AGL15      <---------YAB1    <-----------GT1   ----------->RAV1(1)   <----------DOF2   attagttttttaaatctaaatattgattaattatcttaaataactacatctaatacagcgacatggtagaaaggagtatgcttttctcatgaaacactga  12041800                             --------->ATHB12                       <-------GAMYB                      <---------MYB46(3)                      <---------DEAR3(2)                     <---------DREB2C(2)                     <---------DEAR3(1)                     <---------ANAC58                     <xxxxxxxxxxxxxxxxsmallRNA(s)                                      <---------At4g35610                     <---------ANAC58                                               --------->ATERF1(1)                  <---------DEAR3(1)                                          <-----------RAV1(2)                 <---------ANAC46                                           ----------->RAV1(1)                 <---------ANAC58                                          ----------->HVH21                 <---------ANAC58  <---------ANAC58  <---------ARR11(3)  --------->ANAC58            <---------AtLEC2<---------YAB1           --------->ARR11(3)  --------->ANAC58        <---------ANAC46 <-------TEIL     <-----------RAV1(2)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <----------DOF2<------NtERF2  <---------ANAC58----------->ARR10     --------->ANAC46   aatactccttttgtgtatggctggcggttcatgataggcttgctacaggcgctaagatactaagatggaacagggacgcaacaggggtctgctatttctg  12041900                                                                    --------->ANAC58                     <------ZmHOX2a(2)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                    --------->ARR11(3)          <----------DOF2     --------->ANAC58          <------                    <---------ARR11(3)    <----------DOF2  <---------ETT(2)        ---------->DOF2            ------->TEIL<---------CCA1(2) <---------DAG2   --------->ETT(2)    <---------MYB46(3)   caaaaactgcattgaatctagagatcatctcttcttctcttgcacttttactttggttatctcgacaggctcgctagaggtttgttcaagcgggagtata  12042000             --------->ZAT2          --------->LBD16             <---------At4g35610     ------>NtERF2             --------->At4g35610<---------ZAT2                             <---------ICU4      <------MYB83              --------->At4g35610                      <---------ANAC55(2) --------      <------MYB46(1)           <---------At4g35610                      --------->ANAC55(2) <-------    <---------WOX13(1) --------->ZAT14                         ------>ZmHOX2a(1)  --------->ANAC58  --------->ATHB12 <---------ICU4  <---------LBD16         <---------ARR14(2)     --------->ANAC46 ---ZAT14    <---------ZAT2     --------->ZAT2             --------->ARR14(2)     --------->ANAC58   caagtgattggtctcagctcatcaatacagtctcagccccgcgaagtaatagagttgagaggttcctgatgtgatacttatttcaagtcatactctatac  12042100                                                                                  --------->ANAC55(2)                              <---------YAB1                                      --------->ANAC58                            <---------ICU4                                        --------->ANAC58                           --------->ICU4                                         --------->ANAC46 --                           <---------YAB1                                         <---------ANAC55(2)                        <------NtERF2            --------->At4g35610      --------->ANAC58      -----                       <-----------TGA1          <---------At4g35610      --------->ANAC58   <-------               --------->ANAC58          <---------GLK1(2)         <---------ARR14(2)      <---------ATHB12               --------->ANAC58         ------>MYB83          <---------ANAC46 --------->ARR14(2)  <-             --------->MYB52(1)         ------>MYB46(1) ------->TEIL ------>ZmHOX2a(2)   --------->WOX13(1) ->ZAT14    --------->ARR11(1)----------->GT1 <---------At4g35610<---------MYB46(3)    <---------ATHB12 --ZAT14---------->DOF2<---------RAP2.6(3)--------->GLK1(2)  --------->ATHB12  <---------ARR14(2) <--   agtttggagagaaagaaacggaaggcgtcatgatgaaaaaccaaattctgcagctatgtatattcagtggatcgataagcaaatacgaaatcaattatcc  12042200                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                -----                                                                                                <----            ---------->DOF2                                                              <---------AHL20(2)          <---------YAB1                                                                <---------AHL20(2)       <---------ATHB12                                                                 --------->AHL20(2)       --------->ICU4                                                               --------->AHL20(1) ------->ATHB12                                              --------->YAB1         <---------AHL20(1) ---->WOX13(1)                                               --------->TOE2(3)      <---------AHL20(2) ----GT1--------->YAB1            <---------STY1(2)     --------->WRKY18(1)         --------->AHL20(2) --------ICU4                     --------->STY1(2) ---------->DOF2--------->YAB1  <---------AHL20(2) -------ATHB12   --------->DEAR3(2)           <---------ATERF1(1)  <-----------GT1 --------->AHL20(2)   atcattcgaatgatgaaagaccgacgatgcgatgctagctatcaaggctggctccaaagtcaagcttaataacaatacatctcaaataaatttttttttt  12042300  Previous    Next  AGI:  At1g33200.1    Description:  transposable element gene. pseudogene, similar to SAE1-S9-protein, blastp match of 28% identity and 4.2e-16 P-value to GP|4760708|dbj|BAA77394.1||AB012866 SAE1-S9-protein {Brassica rapa} Range:  from: 12041759    to: 12044670    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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