Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  <----                                                                                              -------                                                                                              <------                    --------->ZAT14                   --------->DAG2                         --------               --------->ARR14(2)                    ---------->DOF2                         <-------              <------ZmHOX2a(1)                  --------->LBD16                            <--------             ----------->GT1                    <---------HSFB2a(2)                        --------->YAB1          ---------->DOF2                       --------->HSFB2a(2)                       <---------YAB1       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------ARR14(2)                          --------->AHL20(1)      <---------At4g35610                    --------->GLK1(2)                           --------->AHL20(2)      --------->At4g35610                    --------->ARR14(2)                          <---------AHL20(1) ------>TOE2(3)<---------ARR14(2)         --------->ANAC46       <---------ANAC58        <---------AHL20(2) --ARR10----------->HVH21              --------->MYB52(1)        <---------ANAC58       --------->AHL20(2)   tcttatccatctgaaaggatactaaactctctaattcgaattacccgaatccagaaaaagccgaatagcatgcattctattggtacttgattatattaat  12022900                                              ------>ZmHOX2a(1)                                     <---------ANAC58                                     <---------ANAC58                                 <-----------GT1                                     <---------ANAC46                             <----------DOF2                              <---------AHL20(2)                                  ===================                             xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                 ------->TEIL                             --------->ARR11(3)                               --------->ZAT18    <---                             <---------ARR11(3)                               <---------ZAT14--------                             --------->AHL20(1)                               <---------ZAT18========        ----------->HVH21    <---------AHL20(1)            --------->ATHB12 <---------------AtSPL8 -----WOX13(1)               <---------AHL20(2)           <---------YAB1    --------------->AtSPL8 -->ATHB12                   --------->AHL20(2)           <---------AHL20(2)<---------------AtSPL3 ---AHL20(2)              --------->YAB1      --------->LBD16              <---------ANAC58 ------>MYB46(1) ->AHL20(2)               --------->AHL20(2) <---------LBD16               <---------ANAC58 ------>MYB83 --AHL20(2)              <---------ATHB12   ----------->RAV1(2)            <---------ANAC46<---------ALFIN1 -AHL20(2)               <---------ATHB51   <---------ANAC46          <------ZmHOX2a(1)<-----------GT1   tggcatatatatgacctgttattgccaataatatattttgggtgtttcctgggcttcagttttattgggctaggaatgggtgtacttttaaacccacttc  12023000                                                        <------NtERF2                                                        <---------MYB52(1)                                                       <---------RAP2.6(3)                                                       <-----------HVH21                                                      --------->RAP2.6(2)                                                      --------->RRTF1(3)                                                      --------->RAP2.3(3)                                                     --------->RAP2.3(1)                                 =====================bZIP_bZIP                                 --------->TGA1a    ------>NtERF2                                ------>MYB83  ----------->RAV1(2)                               <---------ALFIN1     <---------RAP2.3(1)                           <-----------GT1  --------->TGA1a                                  <-------                          <-----------GT1  ------>MYB83------>NtERF2                        <--------                      <---------DAG2       ------>MYB46(1)      <---------ANAC58            <--------                      =====================bZIP_DOF--------->bZIP60(1)                      ---------                      <----------DOF2  --------->PCF2<------NtERF2                   <---------ALFIN1 ==bZIP_DOF         ------>MYB83------>MYB46(1) ----------->HVH21                --------->ZAT18 ------YAB1         ------>MYB46(1)  ----------->HVH21--------->RAP2.3(2)        <---------ZAT18 ->TGA1a           <---------ALFIN1----------->RAV1(2)--------->DEAR3(1) <------ZmHOX2a(1) --------->ANAC55(2) ================================bZIP_DOF <---------ALFIN1      <---------ANAC58 <---------ZAT14   tgattagtctcttagtaaaacccacttttaaacccacttctgacccacttctgacgccgtcatttttcttgagaaggagagagagcaccacttccgtcat  12023100                                                                                        --------->At4g35610        <---------AHL20(1)                                                  --------->ANAC58 --MYB52(1)      ------->GAMYB                                           --------->ZAT18<---------At4g35610 ---TGA1<---------ARR11(3)            <---------AHL20(2)          <----------DOF2     <---------ZAT18 ---HVH21     <-----------GT1   ----------->GT1                 <-----------------AGL1--------->ZAT18 >LBD16 --------->AHL20(1)  <----------DOF2 ------->TEIL     <<<<<<<<<MYB2  --------->ANAC58     <---   tccagcccaatatttttaacgggccatgggcttattgtaaataatgtatttttctcatttttggttttctttatgggcacgattttagtgggctgaattt  12023200                     <---------RVE1(1)                     <---------CCA1(1)                            <---------GLK1(1)                    --------->ARR11(3)                            --------->GLK1(1)                    --------->AHL20(1)                        --------->HSFB2a(2)                    <---------AHL20(1)                       <---------ETT(2)        ----------->RAV1(1)                                 <------NtERF2        <---------ALFIN1   <---------TOE2(3)              <---------ANAC46     --------->PCF2 <---------ARR11(3)                 *TSS------>NtERF2    <-----------TCP11(1)   <---------TOE1(3)   <----------DOF2<---------HSFB2a(2) ---------->DOF2---------->DOF2            <-----------GT1--------->DEAR3(1)         <----------DOF2 ------YAB1   <---------YAB1      <-----------GT1      --------->ANAC46     --------->STY1(1)      --   tgataaaggcccacatatgaaagatatttagggttttttctcttgataccttttaaaacgccgtcgagaaatctccctctagggtttctttgatcaaacc  12023300       <-----------RAV1(2)      <------NtERF2                                                                <-----------GT1      <---------MYB52(1)                                                        <---------ZAT6     <-----------TGA1                                                          >>>>>>>>>TAC1     <-----------HVH21                                                    <---------ETT(1)     <---------RAP2.6(3)    ------>ZmHOX2a(2)                             --------->ANAC46    --------->RAP2.3(3)    <------ZmHOX2a(2)                              ----------->HVH21    >>>>>>>>>AtERF-4      <---------ARR14(2)            <---------HSFB2a(2)------>NtERF2          ---    --------->RAP2.3(2)   --------->ARR11(3)            --------->HSFB2a(2)----------->RAV1(1)    ---    >>>>>>>>>AtERF-3      --------->ARR14(2)            --------->ANAC46 --------->LBD16          ---   --------->RAP2.3(1)    <---------ARR11(3)  --------->GLK1(2)      --------->KAN4(2)         <----- -------->DOF2        ---------->DOF2        <---------GLK1(2)      <---------GLK1(1)      <---------TOE2(3)   agagagccgtcagggagagcaaaacaaagatcggagaagatgaagacgattctttcttccgaaacgatggacatccccgacagtgttaccatcaaggttc  12023400                                                                                      ------>ZmHOX2a(2)                                                                                     <------ZmHOX2a(2)                                   <---------ANAC58                                 --------->ARR14(2)                                   <---------ANAC58                      <---------At4g35610          ==================HOX2a_HOX2a                                  <---------ZAT2          ------>ZmHOX2a(2)       --------->HSFC1(2)                     --------->ZAT2 --------->LBD16   --------->DAG2                 <---------HSFC1(2)          --------->TOE2(3)     xxxxxxxxxxxxxxxxx  ---------->DOF2            --------->LBD16           --------->At4g35610       <---------TOE2(3) ------>ANAC46              <---------ANAC46       --------->ANAC46    <-----------RAV1(2) ------>ANAC58             <---------LBD16         --------->ANAC58--------->GLK1(1)--------->ARR11(3) ------>ANAC58       <------ZmHOX2a(1)----------------------->TaNAC69(2) --------->At4g35610     ---- --TEIL  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        --------->ANAC58<---------GLK1(1)<---------ARR14(2)   acgctaaagtgatcgaagtcgaaggacctcgcgggaagcttgttcgcgatttcaagcatctcaacctcgatttccagctgatcaaggatccagagactgg  12023500                                                 ------>NtERF2                                                --------->DEAR3(1)                                                --------->RAP2.3(2)                                                --------->RAP2.3(3)                                  <---------ANAC55(2)                   <---------O2            <----                         <---------ANAC46      --------->RAP2.3(1)      --------->O2         --------                    <---------ANAC46          ------>NtERF2             --------->TGA1a     <--------                    <---------ANAC58          <---------ATERF1(1)       <---------TGA1a  <---------LBD16                    <---------ANAC58         --------->DEAR3(1)         --------->bZIP60(2)--------->LBD16              <------ZmHOX2a(2)   --------->ANAC46         --------->MYB46(3)          ------>ZmHOX2a(2)             <---------ARR11(3)   --------->ANAC55(1)    <---------ARR14(2)           <---------GLK1(1) xxxx>smallRNA(i2) <-------TEIL   --------->ANAC58       --------->ARR14(2)          <---------ARR11(3) ------>DOF2 --------->ARR11(3)   --------->ANAC58    --------->YAB1    =============================   aaagaagaagcttaagatcgattcgtggtttggaacacgcaaaaccagcgcctccatcagaaccgctcttagccacgtcgataacttgatctccggtgtt  12023600                                                                                                <----                                                                                                <----                                                                 ----------->TGA1          --------->HSFC1(2)                                                                 --------->ALFIN1         --------->ARR14(2)                                                                 ----------->HVH21        <---------ARR14(2)                                                                --------->At5g28300      <---------MYB52(1)                                                                <-----------HVH21       --------->LBD16                                                                <------NtERF2          <---------ANAC55(2)                                --------->ANAC46                --------->ATERF1(1)    ----------->GT1                                --------->ANAC58               <---------DEAR3(2)      --------->ANAC55(2)                                --------->ANAC58               <---------MYB46(3)     <-------TEIL                           <---------------AtSPL8              <---------ATERF1(1)   <------ZmHOX2a(2)                           <---------------AtSPL3            <---------ABI4(1)      --------->AGP1     <---------GLK1(1)    <---------ANAC58                 <---------DEAR3(1)       <---------ARR14(2)     --------->GLK1(1)    <---------ANAC46            ------>NtERF2                 --------->ARR14(2) -------GT1          <---------TOE2(3)            --------->ANAC46     ---------->DOF2------>ZmHOX2a(2) ->ALFIN1  <---------MYB52(1)  --------->SPL7     --------->ANAC58  <---------ANAC46<---------ARR11(3) -MYB52(1)<-------GAMYB   <---------ANAC58        --------->ANAC58  <---------ANAC55(2)--------->ANAC46 =================MYC_MYB<-------TEIL         <---------ATHB12<---------DEAR3(1)   <---------GLK1(1)   accagaggtttccgttacaagatgaggttcgtgtacgcccattttcccatcaacgcctccatcggcggtgacggaaagtctatcgagatccgtaacttcc  12023700                                                                <---------LBD16                                                               ------>ZmHOX2a(2)                                                              <---------GLK1(1)                                                              <------ZmHOX2a(2)                                                             --------->ARR14(2)                                                             <---------AGP1                                                             <---------ARR14(2)                                                             <---------ARR11(3)                                                         --------->REM1(2)                                                      <---------ANAC58                                                      <---------ANAC58          <---------HSFB2a(1)                         <---------ANAC46 <---------ANAC46                                    <-------TEIL                               <---- <---------ANAC58                                  <---------GLK1(2)                            <---- <---------ANAC58                                  --------->ARR11(1)  --------->AHL20(2)  <-------TEIL -----ANAC58        <-----------GT1          <---------YAB1  --------->ARR11(3)    --------->ZAT6 -----ANAC58       <-----------GT1       <---------GLK1(2)  <---------CCA1(2)   ----------->HVH21   <   ttggcgagaagaaggtttgttttatcttcttcatctctgatttgattctcatagattcgtgtagatctcggaatgaaatagactgacactagattcaact  12023800  Previous    Next  AGI:  At1g33140.1    Description:  60S ribosomal protein L9 (RPL90A/C). Identical to 60S ribosomal protein L9-1 (RPL9C) [Arabidopsis Thaliana] (GB:P49209;GB:Q9LDX2); similar to 60S ribosomal protein L9 (RPL90B) [Arabidopsis thaliana] (TAIR:AT1G33120.1); similar to unknown [Solanum tuberosum] (GB:ABB29957.1); contains InterPro domain Ribosomal protein L6; (InterPro:IPR000702); contains InterPro domain Ribosomal protein L6, conserved site-2; (InterPro:IPR002359) Range:  from: 12023255    to: 12024763    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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