Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                --------->ZAT14                   --------->DAG2                                         <---------ARR14(2)                    ---------->DOF2                        --------->TOE2(3)--------->ARR14(2)                --------->LBD16                 <---------ARR11(3)     <------ZmHOX2a(1)                 <---------HSFB2a(2)                 --------->ARR11(3)    ----------->GT1                    --------->HSFB2a(2)                 <-----------ARR10  ---------->DOF2                    <---------ARR14(2)          <---------ANAC55(2)   --------->At4g35610                    --------->GLK1(2)       --------->ARR14(2)       <---------At4g35610                 --------->ANAC46 -------->P     --------->CCA1(1) ----------->HVH21              --------->MYB52(1)        <---------ANAC58 ----ZmHOX2a(2) --------->RVE1(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->ARR14(2)  <---------ANAC58   atcaacccgaatacataaatatctaatcttatccatctgaaaggatactaaactctctaattcgaattacccgaatccagaaaaagccgaatagcatgca  12010500                                                                        ------>ZmHOX2a(1)                                                               <---------ANAC46                                                               <---------ANAC58                      <---------WOX13(1)                       <---------ANAC58                    <---------AHL20(2)                  <---------AHL20(2)                    --------->ATHB12                   <---------AHL20(1)                   --------->AHL20(2)                  <---------ARR11(3)                   <---------AHL20(2)                  xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                  <---------AHL20(2)                   --------->AHL20(1)                 --------->YAB1                        <---------AHL20(2)            --------->ATHB12                <---------YAB1                         --------->AHL20(2)           <---------YAB1               <---------AHL20(2)                      --------->ARR11(3)           <---------AHL20(2)               --------->AHL20(2)                   --------->AHL20(2)  --------->LBD16               --------->AHL20(1)                   --------->YAB1     <---------LBD16               <---------AHL20(1)                  <---------ATHB12   ----------->RAV1(2)              --------->AHL20(2)  ----------->HVH21<---------ATHB51   <---------ANAC46          <----   ttctattggtacttgattatattaattggcatatatatgacctgttattgccaataatatattttgggtgtttcctgggcttcagttttattgggctagg  12010600                                                                                  <---------MYB52(1)                                                                                  <------NtERF2                                                                                 ------>NtERF2                                                                                 <---------RAP2.6(3)                                                                                --------->RAP2.3(2)                                                                                --------->RAP2.3(3)                                                                                --------->RAP2.6(2)            <-----------GT1                                                    --------->RAP2.3(1)        <----------DOF2                                    =====================bZIP_bZIP        =====================bZIP_DOF                      --------->TGA1a    <---------RAP2.3(1)      ------->TEIL                                        ------>MYB83  ----------->RAV1(2)    <---------ZAT14    <---------YAB1                    <---------ALFIN1     ------>NtERF2    --------->ZAT18--------->TGA1a                   <-----------GT1  --------->TGA1a    <---------ZAT18========================================bZIP_DOF  ------>MYB83<-----------HVH21  <---------------AtSPL8                            <-----------GT1  ------>MYB46(1)      <---------ANAC58  --------------->AtSPL8                        <----------DOF2     <---------ALFIN1      <---------ANAC58  <---------------AtSPL3                        <---------DAG2   --------->PCF2<------NtERF2 <---------ANAC58 ------>MYB83                  =====================bZIP_DOF--------->bZIP60(1) <---------ANAC46 ------>MYB46(1)             ------>MYB46(1)  ----------->HVH21--------->DEAR3(1) <---------ANAC58<---------ALFIN1             ------>MYB83------>MYB46(1) ----------->HVH21 --ZmHOX2a(1)<-----------GT1                 <---------ALFIN1----------->RAV1(2)--------->RRTF1(3) <-   aatgggtgtacttttaaacccacttctgattagtctcttagtaaaacccacttttaaacccacttctgacccacttctgacgccgtcatttttcttgaga  12010700                   <---------MYB52(1)                  <-----------TGA1                  <-----------HVH21                  --------->LBD16           <---------ALFIN1                ------->GAMYB       --------->ZAT18            <---------ARR11(3)                                               --       <---------ZAT14            --------->AHL20(1)            <---------AHL20(2)          <--------       <---------ZAT18            <---------AHL20(1)  <----------DOF2 ------->TEIL        <---------- -----ZmHOX2a(1) --------->ANAC55(2)    <-----------GT1   ----------->GT1              <<<<<<<<<MYB2   aggagagagagcaccacttccgtcattccagcccaatatttttaacgggccatgggcttattgtaaataatgtatttttctcatttttggttttctttat  12010800                                               <---------RVE1(1)                                               <---------CCA1(1)                            <--------                                              --------->AHL20(1)                            ---------                                              <---------ARR11(3)                        --------->HSFB2a(2)                                              <---------AHL20(1)                       <---------ETT(2)              <---------At4g35610 ----------->RAV1(1)                                 <------NtERF2  --------->ANAC58             --------->PCF2 --------->ARR11(3)                    <---------ANAC46  --------->ANAC58     <---------YAB1   <---------YAB1               <-----------GT1--------->DEAR3(1) ------->ZAT18--------->At4g35610 <---------ALFIN1   <---------TOE1(3)           *TSS------>NtERF2 --DOF2     --------->ZAT18   <-----------TCP11(1)   <---------TOE2(3)   <----------DOF2<---------HSFB2a(2) -------AGL1<---------ZAT18---------->DOF2---------->DOF2   <-----------GT1      --------->ANAC46   gggcacgattttagtgggctgaattttgataaaggcccacatatgaaagatatttagggttttttctcttgataccttttaaaacgccgtcgagaaatct  12010900                                 <-----------RAV1(2)                                <---------MYB52(1)                                <------NtERF2                               <---------RAP2.6(3)                               <-----------TGA1                                                     -                               <-----------HVH21      ------>ZmHOX2a(2)                             <                              --------->RAP2.3(3)    <------ZmHOX2a(2)                              -                              >>>>>>>>>AtERF-3      --------->ARR11(3)            <---------HSFB2a(2)                              >>>>>>>>>AtERF-4      <---------ARR11(3)            --------->HSFB2a(2)  --------->STY1(1)           --------->RAP2.3(2)   --------->ARR14(2)            --------->ANAC46 -- -GLK1(1)                ---------->DOF2            <---------ARR14(2)  --------->GLK1(2)      ------ >GLK1(1)  <----------DOF2   --------->RAP2.3(1)---------->DOF2        <---------GLK1(2)      <------   ccctctagggtttctttgatcaaaccagagagccgtcagggagagcaaaacaaagatcggagaagatgaagacgattctttcttccgaaacgatggacat  12011000         <-----------GT1      <---------ZAT6                                         <---------ANAC58     >>>>>>>>>TAC1                                           <---------ANAC58                      -- ------>NtERF2                      ==================HOX2a_HOX2a                                  <- ----------->RAV1(1)         --------->DAG2                 <---------HSFC1(2)                     -- -------->ANAC46            ---------->DOF2                 --------->HSFC1(2)          --------->TOE2(3) ---------ETT(1)        --------->ANAC58               --------->LBD16           --------->At4g35610 ---------->HVH21       --------->ANAC46              <---------ANAC46       --------->ANAC58    <--- ------->LBD16          --------->ANAC58       <------ZmHOX2a(1)----------------------->TaNAC69(2) <- --->KAN4(2)         <-------TEIL   ------>ZmHOX2a(2)<---------LBD16         --------->ANAC58<------- ---GLK1(1)      <---------TOE2(3) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        --------->ANAC46--------   ccccgacagtgttaccatcaaggttcacgctaaagtgatcgaagtcgaaggacctcgcgggaagcttgttcgcgatttcaagcatctcaacctcgatttc  12011100                                                                           ------>NtERF2            ------>ZmHOX2a(2)                                             --------->RAP2.3(2)           <------ZmHOX2a(2)                                              --------->RAP2.3(3)          --------->ARR14(2)                                              --------->DEAR3(1)          --------->ARR11(3)                                --------->ANAC46                      ===       <---------TOE2(3)                           <---------ANAC46      --------->RAP2.3(1)      --- ------->ZAT2                                 <---------ANAC46          ------>NtERF2             <-- --------At4g35610                            <---------ANAC58          <---------ATERF1(1)       --- ------->At4g35610                            <---------ANAC58         --------->DEAR3(1)         <-- --------RAV1(2)       ---------->DOF2  <------ZmHOX2a(2)   --------->ANAC58         --------->MYB46(3) --------ZAT2 --------->LBD16          --------->ARR11(3)   --------->ANAC55(1)    --------->ARR14(2) --GLK1(1)<---------ARR14(2)           <---------ARR11(3)   --------->ANAC58       <---------ARR14(2) ->GLK1(1)xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <-------TEIL   <---------ANAC55(2) --------->YAB1    ---   cagctgatcaaggatccagagactggaaagaagaagcttaagatcgattcgtggtttggaacacgcaaaaccagcgcctccatcagaaccgctcttagcc  12011200                                                                                           ----------                                                                                           ----------                                                                                           --------->ALFIN1                                                                                          <------NtERF2                                                                                          --------->ATERF1(1)                                                                                          <----------                                                          --------->ANAC58                --------->At5g28300                                                          --------->ANAC58               <---------ATERF1(1)                      <-----------GT1                     --------->ANAC46               <---------MYB46(3)                   --------->ALFIN1                  <---------------AtSPL8              <---------DEAR3(2)                  <---------MYB52(1)                 <---------------AtSPL3            <---------ABI4(1) ===========================================MYC_MYB <---------ANAC58                 <---------DEAR3(1) ------>TGA1a  <---------LBD16                 <---------TOE2(3)                ------>NtERF2 -------O2  <---------GLK1(1)        <---------MYB52(1)  --------->SPL7     --------->ANAC58     ---- ------>O2 <---------ARR11(3)  <---------GLK1(1)    <---------ANAC58        --------->ANAC46  <------ -------TGA1a------>ZmHOX2a(2) --------->GLK1(1)    <---------ANAC46        --------->ANAC58  <------ ------>bZIP60(2)--------->LBD16    <-------GAMYB  <-------TEIL         <---------ATHB12<---------DEAR3(1)   acgtcgataacttgatctccggtgttaccagaggtttccgttacaagatgaggttcgtgtacgcccattttcccatcaacgcctccatcggcggtgacgg  12011300                      <---------ANAC58                      <---------ANAC58                 --------->HSFC1(2)                                                       <---------LBD16                <---------ARR14(2)                                                       ------>ZmHOX2a(2)                --------->ARR14(2)                                                      <---------GLK1(1)               <---------MYB52(1)                                                       <------ZmHOX2a(2)              --------->LBD16                                                          <---------ARR14(2)             --------->ANAC55(2)                                                       <---------ARR11(3)             ----------->GT1                                                           --------->ARR14(2)             --------->ANAC46                                                          --------->ARR11(3)            ------>ZmHOX2a(2)                                                      --------->REM1(2)           <------ZmHOX2a(2)                                                    <---------ANAC46          --------->ARR14(2)                                                    <---------ANAC58 ->HVH21  <---------ARR14(2)                                                    <---------ANAC58 ->TGA1   <---------ARR11(3)                                                   <-------TEIL -HVH21  <---------GLK1(1) <---------ANAC58                                  <---------GLK1(2) ------>DOF2<-------TEIL   <---------ANAC46   <-----------GT1                --------->ARR11(1)  ---- ---ANAC46--------->AGP1   <---------ANAC58  <-----------GT1           <---------YAB1  <---------AGP1 ---ANAC55(2)<---------ANAC55(2)    <---------HSFB2a(1)            <---------GLK1(2)  <---------CCA1(2)   aaagtctatcgagatccgtaacttccttggcgagaagaaggtttgttttatcttcttcatctctgatttgattctcatagattcgtgtagatctcggaat  12011400  Previous    Next  AGI:  At1g33120.1    Description:  60S ribosomal protein L9 (RPL90B). Identical to 60S ribosomal protein L9-1 (RPL9C) [Arabidopsis Thaliana] (GB:P49209;GB:Q9LDX2); similar to 60S ribosomal protein L9 (RPL90A/C) [Arabidopsis thaliana] (TAIR:AT1G33140.1); similar to unknown [Solanum tuberosum] (GB:ABB29957.1); contains InterPro domain Ribosomal protein L6; (InterPro:IPR000702); contains InterPro domain Ribosomal protein L6, conserved site-2; (InterPro:IPR002359) Range:  from: 12010881    to: 12012504    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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