Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                        ------>ZmHOX2a(2)                                                      ========================HOX2a_HOX2a                                                      ====================HOX2a_HOX2a                                                     --------->CCA1(2)                                                     =====================HOX2a_HOX2a                                                     <------ZmHOX2a(2)                                                    <---------ARR11(3)                --------->ICU4                      --------->ARR11(3)      <---------ZAT2                                --------->AGP1                --------->At4g35610      --------->ZAT2                                <---------ARR14(2)         <-------TEIL     ------>MYB46(1)                                <---------AGP1           <---------GLK1(2)     ------>MYB83                                   --------->ARR14(2)       <---------ARR14(2) ---------WRKY18(1)      <----------DOF2           --------->RVE1(1)         --------->ARR14(2) ------->WRKY38(1) <---------YAB1                 ----------->ARR10    <------ZmHOX2a(1) -------WOX13(1)<---------YAB1                  ---------->DOF2    <------ZmHOX2a(1) >ARR14(2)    <---------ICU4            ----------->RAV1(1)     --------->At4g35610          -------- >GLK1(2)     --------->YAB1           <----------ID1=========================HOX2a_HOX2a <---------- -ARR14(2)   <---------ATHB12---------->ID1---------->DOF2   --------->At4g35610  <---------At4g35610   attgaccaagcttgaatcatgatgtttctttgtctcattagacaacaaagaaaagatctgagaagcagaggaaggaccagattcagctaatatgtcaaag  11966100                                                                 <---------TOE1(1)                                                                 <---------TOE2(1)                                                                --------->SPL7                                                              <---------SPL7                                                             <---------ANAC55(2)                                                             <---------ANAC58                                                        <---------ICU4                                                        --------->ATHB12                                                       =====================HOX2a_HOX2a                                                       <---------YAB1<------ZmHOX2a(1)      <------ZmHOX2a(2)                                <------ZmHOX2a(2)     --------->ARR11(3)                               --------->ARR11(3)     <---------ARR11(3)                               <---------ARR11(3) -->DOF2                                   <---------ARR11(3)<---------ANAC46 -HVH21                                    --------->ARR11(3)<---------ANAC58                       <   agaccaagatcaatggctgtcttaagaaccatgggaagaacagaagagcttgataagatcattgcgtacgaggagaggttttgttcttccattttctaaa  11966200              ------->TEIL             <---------CCA1(2)             <---------GLK1(2)           --------->LBD16           ------>ZmHOX2a(1)      <---------ANAC58              <----------DOF2      <---------ANAC58         ---------->DOF2  <---------ANAC58         --------->ANAC58  <---------ANAC58         --------->ANAC58                <---------YAB1 -----------GT1          ---------->DOF2                *TSS              <----------DOF2       <----   tttttcttgcttcctgaatctctgaaacaaagcaaaagcttttgtcaattctagtcaaattgtgaatgcttcatttctttagactaatagtttcttctct  11966300                           --------->ANAC58                           --------->ANAC58                           <---------ANAC55(2)                           --------->ANAC55(2)                          ------->TEIL                          <---------TOE2(2)                          <-------TEIL                          --------->SPL7                        <---------SPL7                       <---------ANAC58                       <---------ANAC58                      --------------->AtSPL3                      <---------------AtSPL3                                                   <-----               <---------ANAC46         --------->ANAC58                                      <------               <---------ANAC58         --------->ANAC58                                    <--------               <---------AtLEC2 --------->ARR14(2)          ---------->DOF2                 ---------     <-----------------AGL1----------->GT1                <---------ATHB12               <----------DOF2    <-----------GT1   <---------------AtSPL8    ---------->DOF2                 ------------>CBF ------DOF2    <---------ANAC58 <---------ARR14(2) <----------ID1             ------>NtERF2 <--------   tttttttgaccattctggcatggagacgtacgtaaattcgccaagtaaactaaagaacaaatcaaagtttttgagactgaggcccaatgggcttttaatt  11966400                                <---------At4g35610                                --------->At4g35610                                <---------ZAT2                                --------->ZAT2                                                  -----                              <------NtERF2                                             --------->ARR11(3)        <---------ANAC58     --------->LBD16                                            <---------ARR14(3)     <---------MYB52(1)    --------->LBD16          <----------DOF2                     <---------ARR11(3)    <------------CBF       <---------LBD16          <---------DAG2                <---------TOE1(3)   --------->ATHB12       --------->DEAR3(1)      *TSS                            <---------TOE2(3) ----WOX13(1)            --------->MYB46(3)   <-----------GT1                <---------ZAT6     <---- ------CBF            --------->ZAT14   <------ZmHOX2a(2)           <-----------HVH21   --------->ARR14(3) -AHL20(2)            <---------ZAT14  --------->ARR11(3)        --------->At4g35610   <------MYB83 >AHL20(2)            --------->ZAT18  <---------ARR11(3)        ----------->RAV1(2)   <------MYB46(1) -YAB1  <---------ANAC58------->TEIL  <------ZmHOX2a(1)          <---------At4g35610<------ZmHOX2a(1)   gacgaccattgggtttgtttatagtgaaccgcggagcagaggatcatttatctactttatttgtttcatctgtcactcactgttaaggaaggtcttgctg  11966500                                                                                                   <-         ---------->DOF2                                                                         ----    ---------->DOF2        <-----------RAV1(2)     --------->GLK1(1)                          <------ ---->ZAT18        ---------->DOF2          <------ZmHOX2a(1)      --------->WOX13(1)        -------- -----ZAT18     >>>>>>>>>TBF1 <------ZmHOX2a(1)    <---------GLK1(1)   ---------->DOF2       <-------   cgctaagaaagaaaagaagaagaaagatgccaggagcaattgtggaggaagagaaatctcagattgaatccatcaaagagcaattgaaactcgaggttcg  11966600         <----------DOF2 ---------DOF2 ------>ID1                                                                                         < -TEIL<-----------GT1                            <------NtERF2       <-----------RAV1(1)            - ->ARR14(2)                                    <---------ANAC46     <---------ANAC46              <-- --ARR14(2)    ------>ZmHOX2a(1)      <-----------RAV1(1)   <---------ICU4             <---------At4g35610   tctttttttttcttttcctccgagcgattttgtttccgatttgttgttgtcgtcgaatttgataatggtttctggtggaaacagaaggaagatgatgttg  11966700           ---------->DOF2     <------ZmHOX2a(1)                                         --------------->AtSPL8   <---------ANAC46                                            --------------->AtSPL3 ---------ANAC46                   --------->YAB1         <---------TOE2(2) -------->ALFIN1                  --------->ICU4          <---------TOE1(2)<----------DOF2 ------>ZmHOX2a(1) -------ANAC46         <------ZmHOX2a(1)          <------ZmHOX2a(1)------->TEIL           --------->TOE2(3)   ttgtggaggatgtgaaagacggagaggaagaagacgatgatgaagacgatgaggacgtcgaaggtaatgtactctctctttcatttcattttccttactc  11966800                                            --------->LBD16                                           --------->ANAC46                                          <---------LBD16                              <---------AHL20(2)                             --------->AHL20(2)                                        --------->ZAT18                             <---------AHL20(2)                                       <---------AtMYB61                            <---------WOX13(1)                            <----------DOF2       -----                     --------->LBD16  <---------MYB52(1)        <---------YAB1    <---------ANAC58 <----------DOF2   <---------LBD16   <-------GAMYB<-----------GT1   <-------TEIL  <---------ANAC58   tctctttcatttcattttccttccggtttgatttatttcggttaaccggaatttactcgtttgattctgattcatgctttgatttcgagtggtctatgta  11966900             --------->MYB52(2)           <---------MYB52(1)          --------->TOE1(3)           <---------TOE2(3)   <---------HSFB2a(2)                <---------TOE1(3)                          --------->ANAC58   <---------HSFC1(1)             <----------DOF2                                --------->ANAC58   --------->HSFB2a(2)          ---------->ID1       --------->YAB1         <-------TEIL   --------->HSFC1(1)    ----------->ARR10   <---------HSFB2a(2)        <---------TOE2(3)    <------- -->TEIL  --------->TOE2(3)--------->ARR11(3)--------->HSFB2a(2)        <---------TOE1(3)    <-------   tgtttctagaaacgttagtgtatagataagatttgtcttttaggtttgtagaaaatcagaaaattgttgaacttgaggttcataagccctagattaagct  11967000  Previous    Next  AGI:  At1g33030.1    Description:  O-methyltransferase family 2 protein. similar to ATOMT1 (O-METHYLTRANSFERASE 1) [Arabidopsis thaliana] (TAIR:AT5G54160.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62879.1); contains InterPro domain O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); contains InterPro domain Plant methyltransferase dimerisation; (InterPro:IPR012967); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain O-methyltransferase, family 2; (InterPro:IPR001077) Range:  from: 11964756    to: 11966256    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g33040.1    Description:  NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5). Identical to Nascent polypeptide-associated complex subunit alpha-like protein 5 [Arabidopsis Thaliana] (GB:Q8LGC6;GB:Q9MAN9); similar to nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative [Arabidopsis thaliana] (TAIR:AT4G10480.1); similar to nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative [Arabidopsis thaliana] (TAIR:AT4G10480.2); similar to unknown [Populus trichocarpa] (GB:ABK93574.1); contains InterPro domain Nascent polypeptide-associated complex NAC (InterPro:IPR002715); contain Range:  from: 11966450    to: 11967823    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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