Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                     <---------ALFIN1                                                                  --------->MYB46(3)                                                                 <------ZmHOX2a(2)                                                                <---------ARR14(2)                                                            --------->MYB52(1)                                                          --------->ATERF1(1)                                                          --------->MYB46(3)                                               <-----------GT1  --------->ARR14(2)                                    ------>ZmHOX2a(1)    ------>NtERF2--------->AtMYB61         <-----------GT1 --------->ANAC58     <-------TEIL--------->DEAR3(2)    --------->YAB1       --------->ANAC58   <---------GLK1(2)  ------->GAMYB   --------->ICU4    <-----------HVH21      <---------ARR14(2)<---------ATHB12  <---------TOE2(3) --------->ANAC46====================================HOX2a_HOX2a            <----- ->ARR11(3)         --------->WOX13(1)      --------->ARR14(2)--------->MYB46(3)               <-----   tgttaatgatgttaccacatatcagtcacgaccttgtcctgaaacagattcaccatcggagccaacgatccacctccattttggttcttggtgaagtact  11965900                                                                                   <---------GLK1(1)        --------->At4g35610                                                        --------->GLK1(1)<       <-----------ARR10                                                    --------->ANAC58<--------      <------ZmHOX2a(1)                    <---------ANAC46          ----------->GT1       <---------GLK1(2)   <-----------RAV1(2)                   <---------ZAT14         <---------ZAT14--------->ANAC58   -- ----------->RAV1(1)                   --------->REM1(2)         --------->ZAT14--------->ANAC58  <-- ----ANAC58 --------->ANAC58      <---------At5g28300      <-------MYC3     --------->ANAC58--------- ----ANAC58 --------->ANAC58    ----------->HVH21          ------->MYC3     --------->ANAC46---------   tggcaacaggagctaagccatagattgcaaatggctcaccgtgttcagtagaaacagagcatgtgagtatagagtaactcgcaagaaatctcagaatccg  11966000                                                      ========================HOX2a_HOX2a                                                      ====================HOX2a_HOX2a                                                      ------>ZmHOX2a(2)                                                     <------ZmHOX2a(2)                                                     --------->CCA1(2)                                                     =====================HOX2a_HOX2a                                                    <---------AGP1                <---------YAB1                      --------->AGP1      --------->ZAT2                                --------->ARR14(2)            --------->At4g35610      <---------ZAT2                                --------->ARR11(3)         <-------TEIL     ------>MYB83                                   <---------ARR14(2)       <---------GLK1(2)     ------>MYB46(1)                                <---------ARR11(3)       --------->ARR14(2) ---------WRKY18(1)      <----------DOF2           --------->RVE1(1)         <---------ARR14(2) -ARR14(2)    --------->YAB1                      ----------->ARR10    <------ZmHOX2a(1) ------->WRKY38(1) <---------YAB1               ---------->DOF2    <------ZmHOX2a(1) -------WOX13(1)--------->ICU4          ----------->RAV1(1)     --------->At4g35610          -------- >GLK1(2)     <---------ICU4           <----------ID1=========================HOX2a_HOX2a <---------- >ARR14(2)   <---------ATHB12---------->ID1---------->DOF2   --------->At4g35610  <---------At4g35610   attgaccaagcttgaatcatgatgtttctttgtctcattagacaacaaagaaaagatctgagaagcagaggaaggaccagattcagctaatatgtcaaag  11966100                                                                 <---------TOE1(1)                                                                 <---------TOE2(1)                                                                --------->SPL7                                                              <---------SPL7                                                             <---------ANAC58                                                             <---------ANAC46                                                        --------->ATHB12                                                        <---------ICU4                                                       <---------YAB1<------ZmHOX2a(1)                                                       <------ZmHOX2a(2)      <------ZmHOX2a(2)                                =====================HOX2a_HOX2a     <---------ARR11(3)                               <---------ARR11(3)     --------->ARR11(3)                               --------->ARR11(3) -->DOF2                                   --------->ARR11(3)<---------ANAC55(2) -HVH21                                    <---------ARR11(3)<---------ANAC58                       <   agaccaagatcaatggctgtcttaagaaccatgggaagaacagaagagcttgataagatcattgcgtacgaggagaggttttgttcttccattttctaaa  11966200              ------->TEIL             <---------GLK1(2)             <---------CCA1(2)           ------>ZmHOX2a(1)           --------->LBD16      <---------ANAC58              <----------DOF2      <---------ANAC58         ---------->DOF2  <---------ANAC58         --------->ANAC58  <---------ANAC58         --------->ANAC58                <---------YAB1 -----------GT1          ---------->DOF2                *TSS              <----------DOF2       <----   tttttcttgcttcctgaatctctgaaacaaagcaaaagcttttgtcaattctagtcaaattgtgaatgcttcatttctttagactaatagtttcttctct  11966300                           --------->ANAC55(2)                           <---------ANAC55(2)                           --------->ANAC58                           ----------->GT1                          <-------TEIL                          <---------TOE2(2)                          ------->TEIL                          --------->SPL7                        <---------SPL7                       <---------ANAC58                       <---------ANAC58                      <---------------AtSPL3                      --------------->AtSPL3                                                   <-----               <---------ANAC58         --------->ANAC58                                      <------               <---------ANAC46         --------->ANAC58                                    <--------               <---------AtLEC2 --------->ARR14(2)          ---------->DOF2                 ---------     <-----------------AGL1--------->ANAC58               <---------ATHB12               <----------DOF2    <-----------GT1   <---------------AtSPL8    ---------->DOF2                 ------------>CBF ------DOF2    <---------ANAC58 <---------ARR14(2) <----------ID1             ------>NtERF2 <--------   tttttttgaccattctggcatggagacgtacgtaaattcgccaagtaaactaaagaacaaatcaaagtttttgagactgaggcccaatgggcttttaatt  11966400                                --------->ZAT2                                <---------ZAT2                                <---------At4g35610                                --------->At4g35610                                             -----                              <------NtERF2                                             --------->ARR11(3)        <---------ANAC58     --------->LBD16                                            <---------ARR14(3)     <---------MYB52(1)    --------->LBD16          <----------DOF2                     <---------ARR11(3)    <------------CBF       <---------LBD16          <---------DAG2                <---------TOE2(3)   --------->ATHB12       --------->DEAR3(1)      *TSS                            <---------TOE1(3) ----WOX13(1)            --------->MYB46(3)   <-----------GT1                <---------ZAT6     <---- ------CBF            --------->ZAT18   <------ZmHOX2a(2)           <-----------HVH21   --------->ARR14(3) -YAB1  <---------ANAC58------->TEIL   <---------ARR11(3)        ----------->RAV1(2)   <------MYB46(1) >AHL20(2)            --------->ZAT14  --------->ARR11(3)        <---------At4g35610   <------MYB83 -AHL20(2)            <---------ZAT14 <------ZmHOX2a(1)          --------->At4g35610<------ZmHOX2a(1)   gacgaccattgggtttgtttatagtgaaccgcggagcagaggatcatttatctactttatttgtttcatctgtcactcactgttaaggaaggtcttgctg  11966500                                                                                                   <-         ---------->DOF2                                                                         ----    ---------->DOF2        <-----------RAV1(2)     <---------GLK1(1)                          <------ ---->ZAT18        ---------->DOF2          <------ZmHOX2a(1)      --------->WOX13(1)        -------- -----ZAT18     >>>>>>>>>TBF1 <------ZmHOX2a(1)    --------->GLK1(1)   ---------->DOF2       <-------   cgctaagaaagaaaagaagaagaaagatgccaggagcaattgtggaggaagagaaatctcagattgaatccatcaaagagcaattgaaactcgaggttcg  11966600         <----------DOF2 ---------DOF2 ------>ID1                                                                                         < -TEIL<-----------GT1                            <------NtERF2       <-----------RAV1(1)            - ->ARR14(2)                                    <---------ANAC46     <---------ANAC46              <-- --ARR14(2)    ------>ZmHOX2a(1)      <-----------RAV1(1)   <---------ICU4             <---------At4g35610   tctttttttttcttttcctccgagcgattttgtttccgatttgttgttgtcgtcgaatttgataatggtttctggtggaaacagaaggaagatgatgttg  11966700           ---------->DOF2     <------ZmHOX2a(1)                                         --------------->AtSPL3   <---------ANAC46                                            --------------->AtSPL8 ---------ANAC46                   --------->YAB1         <---------TOE1(2) -------->ALFIN1                  --------->ICU4          <---------TOE2(2)<----------DOF2 ------>ZmHOX2a(1) -------ANAC46         <------ZmHOX2a(1)          <------ZmHOX2a(1)------->TEIL           --------->TOE2(3)   ttgtggaggatgtgaaagacggagaggaagaagacgatgatgaagacgatgaggacgtcgaaggtaatgtactctctctttcatttcattttccttactc  11966800  Previous    Next  AGI:  At1g33030.1    Description:  O-methyltransferase family 2 protein. similar to ATOMT1 (O-METHYLTRANSFERASE 1) [Arabidopsis thaliana] (TAIR:AT5G54160.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62879.1); contains InterPro domain O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); contains InterPro domain Plant methyltransferase dimerisation; (InterPro:IPR012967); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain O-methyltransferase, family 2; (InterPro:IPR001077) Range:  from: 11964756    to: 11966256    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g33040.1    Description:  NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5). Identical to Nascent polypeptide-associated complex subunit alpha-like protein 5 [Arabidopsis Thaliana] (GB:Q8LGC6;GB:Q9MAN9); similar to nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative [Arabidopsis thaliana] (TAIR:AT4G10480.1); similar to nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative [Arabidopsis thaliana] (TAIR:AT4G10480.2); similar to unknown [Populus trichocarpa] (GB:ABK93574.1); contains InterPro domain Nascent polypeptide-associated complex NAC (InterPro:IPR002715); contain Range:  from: 11966450    to: 11967823    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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