Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   ------>ZmHOX2a(1)        <---------ANAC46           <---------------AtSPL8                             <---------ARR11(3)           ----------->GT1         ---------->DOF2         --------->TOE2(3)   --------->ARR11(3)      --------->YAB1              --------->AHL20(2)         --------->TOE1(3)  --------->YAB1           <---------ICU4         --------->AHL20(2)     -- ------>MYB46(3)           <---------ATHB12         <---------ATHB12    <---------AHL20(2)    ------- -------GT1 --------->AHL20(2) ------>ZmHOX2a(2)------------>CBF        <-----------GT1  <-------TEIL   accaatataaaccttaaaattttgggacaatgatccttccattttgactcatcaataatcgtgtgaaatcgtatttacttaaataaaagagtacataaaa  11955400                                                                                     <-----------GT1                                                                                ----------->GT1                                                                             ---------->DOF2                                                                          <---------WOX13(1)       --------->MYB52(1)                                              <---------AHL20(2) ----------->GT1                                                       --------->AHL20(2) --------->GT1                                             <---------YAB1<------------CBF --->DOF2       ----------->GT1     ---------->DOF2    ------->TEIL   --------->AHL20(2)   gttgtgaaaaaaccgaagaagtataaaaaaacactgctaaaagttatttgagaaatgtattttgatactgcatttaattgaaaggtattaccttgttgac  11955500             <----------DOF2           --------->LBD16         <------NtERF2        <---------ATERF1(1)        ------>NtERF2       --------->ARR14(2)       <---------ARR14(2)      --------->ATERF1(1)     <---------RAP2.3(1)     <<<<<<<<<AtERF-3                    ------>MYB46(1)     <<<<<<<<<AtERF-4                    --------->ANAC58     <---------ATERF1(1)                 ------>MYB83     ------>NtERF2                       --------->ANAC58    <---------DEAR3(1)                   --------->ANAC46    <---------RAP2.6(2)                <---------ALFIN1                                       <------    <---------RAP2.3(2)                --------->DEAR3(1)      <---------ICU4          --------->RVE1(1)    <---------RAP2.3(3)                --------->AtMYB61       ------>ZmHOX2a(2)      --------->ARR11(3)   --------->RAP2.6(3)                --------->MYB46(3)     <---------ARR11(3)       <---------ARR11(3) ----------->TGA1                    ------>NtERF2           --------->ARR11(3)       --------->GLK1(2) ----------->HVH21        <-----------TGA1            --------->YAB1    ----------->RAV1(1)   <------   atagtgacggctccgctatagttccagtcgtcactatgccaccacccaaattcaaatcagcatgatcttgacaacaacaaaaaacaaaaatctcttcctt  11955600                                             ------>ZmHOX2a(1)                  --------->HSFB2a(2)               --------------->AtSPL8        <---------HSFB2a(2)                <---------HSFB2a(2)         --------------->AGL15--------->ANAC46                               <---------AGP1       <--         <---------------AGL15--------->AtLEC2                            <----------DOF2         ---        ----------------->AGL3--------->ANAC58                           <---------ANAC58 --------->ANAC58    <---------ICU4 ------->TEIL            ------>ZmHOX2a(2)    --------->At5g28300<---------GLK1(2) ---ANAC58   <---------AHL20(2)  ----------->RAV1(1)           ----------->GT1 ------>ZmHOX2a(2) ---- ---ANAC58  --------->AHL20(2)--------->ANAC58           --------->ZAT14 <---------ANAC58 --------->ANAC58   ggtccataattccatataatgtactcgttttcatgcaacatttgatcctagacgactactacagacagtaaatgggcttgatctggaatcttacgcctat  11955700                                                       --------->ZAT18                                                  <---------GLK1(1)                                                 <---------ARR14(2)                                                 --------->ARR14(2)           ---------->DOF2                      <------ZmHOX2a(1)              -------->P   --------->MYB59                          <---------ARR14(2)   *TSS       <---------MYB52(2) -------AHL20(2)        --------->ALFIN1    --------->ARR14(2)   <----------DOF2 ------>AHL20(2)     --------->DAG2   --------->DAG2   --------->ZAT14    --------->ZAT6 ----->AHL20(2)     ---------->DOF2  ---------->DOF2   <---------ZAT18 <----------DOF2         ------   ttatttaggcccattaagcccataaagtgggagaactaaaaaagtggataggatttgtgaactcgctctttagctttcactaaccttcttccttcacagt  11955800         <------NtERF2       <---------ANAC46       <---------RAP2.6(2)        --------->At4g35610                                  <---------At4g35610       <---------ANAC58           --------->ZAT2                                       --------->At4g35610       <---------ANAC58           <---------At4g35610                              <-----------HVH21 --------->ATHB12                 <---------ZAT2      --------->REM1(1)           <----------DOF2 --->At5g28300              <----------DOF2  <<<<<<<<<TBF1  <---------ALFIN1<---------GLK1(2)      --   gaatcaatggcgtcttcttctctatcaactctttgcagctcaacttcttcttctctacatcccaactccaaactctcacattctctttcagctaaattat  11955900                               ---------->DOF2                <---------ANAC58 --------->ANAC58               --------------->AtSPL3                               <---------GLK1(1)             <-----------GT1--------->LBD16                         --------->GLK1(1)    --------->ANAC58       <---------HSFB2a(2)          ------>ZmHOX2a(1)                       -----    --------->ANAC58       --------->HSFB2a(2)<---------At4g35610  <---------ARR11(3)           -----  ---------->DOF2         <---------LBD16 --------->ARR14(2)    --------->LBD16                ------ ---->ZmHOX2a(1)<---------ANAC58 --------->ANAC58      --------->ANAC46                      <-------   cctccaaagcaaatgtttccgtccaatttctgggaaagaaacagtctccgcttctctcctcaactccgagatttctcactgttatcgccatggctccacc  11956000                                                                                       <------MYB46(1)                      ----------->GT1                                                  <------MYB83                     <---------------AtSPL8                                          <---------WOX13(1)        <------NtERF2--------------->AtSPL8                                        --------->ATHB12       --------->ANAC58        <----------DOF2                                   <---------WOX13(1)       --------->ANAC58       <---------ICU4                                     <----------DOF2    --------->LBD16  --------->DAG2                                             <---------ANAC58  <---------LBD16    --------------->AtSPL3                    --------->GLK1(2)<---------ANAC58 ---->TOE2(3)      ---------->DOF2                      --------->TOE1(2)       <---------ANAC46 ---->AtMYB61  <---------------AGL15            --------->TOE1(3)          --------->ATHB12   <------ --->ANAC46    --------------->AGL15            --------->TOE2(3)         <---------YAB1 <-----------RAV1(1) --ALFIN1 ---------->DOF2<-------TEIL  -------->P------>ZmHOX2a(1)        <---------AHL20(2)<--------   taaacccggaggcaaagctaaaaaaggtacaatcttttcgctacccatttccttaaaacctagaaattctcttaatttcattgcttgattggtgttgtgg  11956100                                                                          <---------SPL7                                                                         <------MYB46(1)                                                                         <------MYB83                                                                        <---------AtMYB61                                                                       <--------P                                                                       <---------MYB55(1)                                                                       <---------MYB52(1)                                                                  --------->MYB52(1)                                                                 --------->DEAR3(1)                                                                 <---------ALFIN1                                                                 --------->AtMYB61                                                                --------->MYB46(3)                                                                <---------ABI4(2)    <------MYB83                                                               <---------ATERF1(1)<-------GAMYB                                                               ------>NtERF2     ------>NtERF2                                                              --------->PCF2  --------->LBD16                                                              <---------TCP20 <---------ATERF1(1)                                                              <---------TCP16(1) <---------MYB46(3)                                                            <---------ATERF1(1)<---------------------WRI1                                                  --------->DAG2--------->ATERF1(1)  <------MYB46(1)                                                 ---------->DOF2<------NtERF2<---------DEAR3(1)                                              <------NtERF2--------->ANAC46 --------->SPL7                                             --------->LBD16------>NtERF2<---------MYB46(3)                                            <---------ANAC46--------->LBD16 <---------LBD16                                    <----------DOF2    <---------GLK1(1)<---------MYB46(3)                                   <---------ANAC58--------->ANAC58   <---------MYB52(1) ---ANAC46                <---------YAB1   <---------LBD16<---------LBD16<---------DEAR3(2) -ANAC46         <---------ANAC46  <---------ANAC58--------->ANAC58  <---------MYB46(3)   gtttggaatttttgtagttgtgggagttatcaaacttgctttagaggcgggaaaagcaactccggcaccaccggttggtccggcgcttggttctaaggga  11956200                        --------->YAB1                     --------->YAB1    <---------At4g35610                    --------->ICU4     --------->At4g35610           <---------DAG2<---------AHL20(2)   --------->DAG2           <----------DOF2         <---------ARR11(3)          <---------ANAC58       --------->ANAC58          <---------ANAC58<---------YAB1     ---------->DOF2     <---------ICU4--------->ANAC58<---------ARR14(2)            ------>ZmHOX2a(1) <---------TOE2(3) --------->ANAC58--------->ARR14(2)     <---------YAB1                         <--- <---------YAB1  <---------AtLEC2--------->ANAC58  ----------->GT1        <-----------GT1     -------   gttaacattatggctttttgcaaggattataatgcaagaactgctgataaagctggttatatcattcctgttgaaatcactgtcttcgatgtgagttttg  11956300  Previous    Next  AGI:  At1g32980.1    Description:  subtilisin-like serine protease-related. similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G32970.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62884.1); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Peptidase S8, subtilisin-related (InterPro:IPR015500) Range:  from: 11954258    to: 11955342    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g32990.1    Description:  PRPL11 (PLASTID RIBOSOMAL PROTEIN L11); structural constituent of ribosome. Identical to 50S ribosomal protein L11, chloroplast precursor (RPL11) [Arabidopsis Thaliana] (GB:Q9MAP3); similar to ribosomal protein L11 family protein [Arabidopsis thaliana] (TAIR:AT5G51610.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62882.1); contains InterPro domain Ribosomal protein L11, bacterial-type; (InterPro:IPR006519); contains InterPro domain Ribosomal protein L11; (InterPro:IPR000911) Range:  from: 11955765    to: 11957264    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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