Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   <---------ETT(2)                                 --------->ETT(2)                                 --------->ZAT14                                 <---------ZAT14                          --------->ZAT14                          <---------ZAT14                                               --------->ARR11(3)                       --------->HSFC1(2)                                               <---------ARR14(2)                   --------->ANAC58                                                     --------->ARR14(2)                   --------->ANAC58     <---------WOX13(1)                              <---------ARR11(1)  <---------CCA1(2)--------->ANAC46   --------->ATHB12                                  <---------ARR11(3) ->NtERF2 <---------MYB52(1)   <---------ZAT14                                  --------->ARR14(2) ->At4g35610 <---------ANAC46  --------->ZAT14                      --------->MYB52(1) <---------CCA1(2)   cctcataccttcgtttcttatacgaaacttcactgtagactgattaacttcaaacacatctataagtgaagaacggtctcccaatctccaaatcttgttc  11919400                       --------->ALFIN1                     --------->ALFIN1                     ----------->HVH21                    <-----------HVH21                    <-------MYC3                    ------->MYC2                    <-------MYC2                    ------->MYC3                    <-------PIF5                    ------->PIF5                   <---------TGA1a                          <---------HSFB2a(1)                   --------->TGA1a                          --------->HSFB2a(1)                   <---------O2                            --------->ARR11(3)     ------->PIF5                   --------->bZIP60(2)                     <---------ARR11(3)     <-------PIF5            <-----------GT1                               --------->GLK1(1)      <---------At4g35610          <---------GLK1(1)------>NtERF2               --------->ANAC58          --------->At4g35610         <---------GLK1(2)<---------PCF2               --------->ANAC58          ----------->RAV1(2)  --------->YAB1   --------->ANAC46                  --------->YAB1       <---------ARR14(2) <<<<<<<<<ARR1     --------->O2                     <---------ATHB12      --------->ARR14(2) <---------ATHB12<---------ALFIN1                 --------->WOX13(1)   <---------TOE2(3) <<<<<<<<<ARR2   <------------OsbHLH66   <---------GLK1(2)<---------GLK1(1)     ------->TEIL    -----   acaatcatatggattttccccacgtgaggggccttagtattcagaaactttccaatcaagaaatcttcccatagaggttttgcacctgcaaacacatcct  11919500                                                                                                    -                                                            --------->CCA1(2)              <---------ANAC58                                                           <---------ARR11(3)              <---------ANAC58                                                           --------->ARR11(3)    <-----------------AGL1                                                           --------->ARR11(1)  <---------WRKY18(1) <-                                                           --------->ARR14(2) --------->WRKY38(1) <--                                                         ----------->ARR10    --------->WRKY12    ---                                                <---------At4g35610           --------->WRKY45 ------                                                --------->At4g35610         --------->TOE2(3)  <----- ->ZmHOX2a(1)    ------>ZmHOX2a(1)          <----------DOF2<---------ARR14(2)--------->DOF5.7(2)-----   ttggaactactaccttctccttaccatctatctctgataccacaaacttttgctgagagaagatatgtttttttgcaacgttgacccaagatggcttccc  11919600                                                                                                -----                                                                                               ======                                                                                               <-----                                                                                               ------                                                                                               ======                                     <---------WOX13(1)                                        <-----        <----------DOF2            --------->ATHB12                 --------->REM1(1)         -------        <---------DAG2            ------>ZmHOX2a(1)                 <---------ALFIN1          <------ ----->ZmHOX2a(2)            <---------ANAC58                      <---------ZAT14      --------->ZAT2 -----ZmHOX2a(2)             <---------ANAC58                      --------->ZAT14      <---------ZAT2 -------ARR14(2)            --------->HSFB2a(1)                   <---------ALFIN1      <---------At4g35610 ------>ARR14(2)            --------->HSFC1(2)               ------>MYB46(1)            --------->At4g35610 --->HSFB2a(2)              <---------HSFC1(2)               -------->P       --------->LBD16-------- ----HSFB2a(2)              <---------HSFB2a(1)              ------>MYB83    --------->HSFB2a(2)===== ---->LBD16       <---------AtLEC2<---------YAB1            <---------ALFIN1 <---------HSFB2a(2)=====   gatctgattccttttcccttgaatggacgatgcttcctgattgatttttgaataagtttcccctacccctacacttgttcccgagcctgtagctgagatc  11919700                                                                                       <------NtERF2                                                                                       --------->ATERF1(1)                                                                                      <---------RAP2.6(3)                                                                                     --------->RAP2.3(2)                                                                                     --------->DEAR3(1)                                                                                     --------->ATERF1(2)                                                                                     --------->RAP2.6(2)                                                                                     --------->RAP2.3(3)                                                                                     --------->RRTF1(2)                                                                                     <---------ATERF1(2)                                                                                     --------->ANAC58                                                                                     >>>>>>>>>AtERF-1                                                                                     --------->ANAC58                                                                                     >>>>>>>>>AtERF-2                                                                                     >>>>>>>>>AtERF-3                                                                                     >>>>>>>>>AtERF-7                                                                                    --------->RAP2.3(1)                                                                                    --------->DEAR3(2)                                                                                    --------->ATERF1(1)                                                                                    --------->ERF1                                                                                    --------->RRTF1(1)                                                                             --------->DEAR3(1)                                                                            --------->DEAR3(2)                                                                            --------->ATERF1(1)                                                                            <------NtERF2                                                                           <---------ATERF1(1)                                                                           ------>NtERF2<-----------RAV1(2)                                                                           --------->MYB52(1)   <----                        -------->P                                        <---------ALFIN1      <----    <---------ANAC58    ------>MYB83                                    <-----------HVH21  <---------ZAT2    <---------ANAC58    ------>MYB46(1)                           ------>MYB83     <---------ATERF1(1) ->ZmHOX2a(2)         <---------MYB59                             ------>MYB46(1)  --------->ZAT2 ================HOX2a_HOX2a                                    <---------MYB59    <---------ZAT2 ----GLK1(1)          --------->AtMYB61                         <---------MYB111(1)<---------At4g35610 --->GLK1(1)         --------->MYB46(3)                         <---------MYB46(2) --------->At4g35610 =====================HOX2a_HOX2a                              <-----------------AGL1>>>>>>>>>AtERF-5 -ZmHOX2a(2)      ----------->HVH21        <------ZmHOX2a(2)--------->MYB46(3)  --------->DEAR3(1) -->ARR11(3)   ===================================HOX2a_HOX2a<---------ALFIN1--------->ATERF1(2)<---- ---ARR11(3)   ------>ZmHOX2a(1)           ===================HOX2a_HOX2a--------->MYB46(3)--------->ZAT2 ->GLK1(1)------>ZmHOX2a(1)                ================HOX2a_HOX2a --------->LBD16------>NtERF2-- =====================HOX2a_HOX2a  --------->ANAC58    <------ZmHOX2a(1)------>NtERF2>>>>>>>>>AtERF-4 ================HOX2a_HOX2a       --------->ANAC58 <------ZmHOX2a(1)<---------LBD16--------->MYB46(3)   tcttctgcgttcctctccttctgaccaacctcttgactcgaaacgatcactggaggaggagaaccacctaatccggccaccggcgagccgccaggctggc  11919800                       <---------ANAC58           ------>NtERF2          --------->DREB2C(2)          ----------->HVH21          --------->RAP2.3(3)          --------->At1g77200          --------->DEAR3(1)         --------->ORA47(2)         --------->ERF1<---------ANAC58         --------->RAP2.3(1)         --------->DEAR3(2)                                               --------->ZAT2         --------->RRTF1(1)                                               <---------At4g35610         --------->ATERF1(1)                                              <---------ZAT2         <------NtERF2 <---------ANAC46                                   --------->At4g35610        ------>NtERF2 <-------TEIL                                      <-----------RAV1(2)        <---------ATERF1(1)                                            --------->TGA2(2)        --------->At4g35610                                           <-----------TGA1       --------->RAP2.3(2)                                            <-----------HVH21       --------->DEAR3(1)                                            <---------TGA1a       --------->RAP2.6(2)                                           --------->ANAC46      --------->DEAR3(2)                                             <---------O2      --------->ERF1--------->TOE2(2)                                --------->O2      --------->ATERF1(1)                                            --------->TGA1a      --------->RAP2.3(1)                                            --------->bZIP60(2)     <---------ATERF1(1)          ----------->GT1                    ==========================bZIP_DOF     --------->At4g35610  --------->REM1(2)--------->TOE2(3)         --------->ANAC58 -----ANAC58   --------->DOF5.7(2)--------->ANAC58                   --------->ANAC58 -----ANAC58   --------->At5g28300--------->ANAC58                 <---------ALFIN1        --------->MYB52(1) -----ANAC46<------NtERF2*TSS   ---------->DOF2    <------NtERF2 ------>NtERF2      ---------->DOF2 < -------->DOF2----------->GT1   ===============================================bZIP_DOF --------->YAB1   ttaaagaagccgccgacggtaacatgcgtgaagagaaagcaaaaaccctagtcgcctctgttttcgcctccacgtcagcagagcaaaaaagaataactgt  11919900                                                                                            ---------                                                                                           ------>MYB83                                                                                   --------->At4g35610                                                                               <-----------ARR10                                                                               <---------ARR11(3)                                                                               --------->ARR14(2)                                                                  --------->At4g35610      ------>MYB46(1)                                                     <---------MYB52(1)<-----------HVH21 <---------MYB59           --------->TOE2(3)                    <---------GLK1(1) --------->ZAT2 ------>ZmHOX2a(2)           --------->YAB1                       --------->GLK1(1) <---------ZAT2<------ZmHOX2a(2)          --------->MYB46(3)                 ------>ZmHOX2a(1)    <---------At4g35610----------->HVH21       <---------WRKY12                --------->HSFC1(2)    --------->ANAC58  <---------ARR14(2)      <---------MYB52(1)               <---------HSFC1(2)    --------->ANAC58  <---------ARR14(3)      --------->WRKY18(1)              --------->HSFB2a(1) <---------ANAC58    --------->GLK1(2)     <-----------HVH21  <-----------GT1<---------HSFB2a(1) <---------ANAC58    --------->ARR14(3)   <     --------->LBD16  <---------WOX13(1)     --------->LBD16 --------->AtLEC2  --------->ARR11(3) <-- xxxxxxxxxxxxxxxxsmallRNA(i)           --------->At4g35610<---------ZAT18     <------ZmHOX2a(1)   ---   aagtttccgtcaaccatagatttgatttactctgtgatagaagcttcctgatatcggtagtgcatgcaagctgtgttagaggatcttctgaccaaacacc  11920000                                                                                                  <--                                                                                                  >>>                                                                                                  ===                                                                                                  <--                                                                                                  <--                                                                                                  <--                                                                                                  <--                                                                                                  ---                                                                                                  <--                                                                                                  ---                                                                                                  ===                                                                                                  ---                                                                                                  <--                                                                                                  ---                                                                                                  <--                                                                                  <---------ARR14(2)                                                                                  --------->ARR11(1)                    <---------ANAC58                                              --------->ARR11(3)          <---------At4g35610                                                     <---------ARR11(3)          --------->At4g35610                                      ------>ZmHOX2a(2)              <--   <---------AtLEC2 <---------ANAC58                              <------ZmHOX2a(2)            ------ >MYB46(3)<------NtERF2               <---------GLK1(1)          --------->ARR11(3)            ------ ----------DOF2--------->YAB1     --------->HSFC1(1)             <---------ARR11(3)--------->CCA1(2) -------ZAT2   <---------ICU4     <---------HSFB2a(2)    <---------ANAC58         --------->ARR14(2) ------>ZAT2  <------ZmHOX2a(2)   --------->HSFB2a(2)    <---------ANAC58       ----------->ARR10----   agcttgaatggcagcgatcatggcttcgtcgtccatctagaaatcaccagagattgtttacttgtgagatcgtttttagaccaagatttgggttttagtg  11920100    <----------DOF2   <---------ANAC58   <---------ANAC58 -------O2 >>>>>>>HY5 ==============bZIP_DOF -------ANAC55(2) -------ANAC58 -------bZIP60(1) -------bZIP60(2) ------>bZIP60(1) -------TGA1a ------>TGA1a ==============bZIP_DOF ------>O2                                                                                     ------ -------ANAC58                                                                                 ------ ------>ANAC55(2)                       --------->ANAC46                                      <------ -------ANAC55(1)                     <-----------GT1                                     ---------->DOF2 -------ANAC46                 --------->ANAC46                                           =========== ----->HVH21                   --------->ANAC58                 --------->GLK1(1)      ----------->GT1 ----->TGA1                  ------>ZmHOX2a(1)              --------->LBD16       =================== ------->STF1  <----------DOF2 --------->ANAC58            --------->LBD16        ---------->DOF2   acgtggctttctctcttctttgacttctctcctaagcaattcacaaaacttgaagataaacccgagaaatctaaactgaaatgtgaaagaggtaaagaat  11920200                           <---------ZAT18                           --------->ZAT18                     =========================bZIP_DOF                     <---------O2                     --------->O2                     <---------REM1(1)                     --------->bZIP60(1)                     <---------TGA1a                     <---------ANAC58                     <---------ANAC58                     <---------ANAC46                     <---------ANAC55(2)                     <---------bZIP60(1)                     --------->ANAC55(2)                     <---------bZIP60(2)                   <---------TGA2(2)                                           --------->ARR14(2)                  ----------->HVH21                                            <-----------GT1                  ----------->TGA1                                             <---------ARR14(2)              --------->CCA1(2)                                                --------->ARR11(3) --->ARR11(3)<---------ARR14(2)    ---------->DOF2                            <---------CCA1(2) --->GLK1(2) <---------ARR11(3) --------->ANAC58     <<<<<<<<<TBF1     --------->ANAC46            <- ---GLK1(2)  --------->ARR14(2) --------->ANAC58  <<<<<<<<<TBF1  <---------MYB52(1)------>ZmHOX2a(1)< ==============================bZIP_DOF --------->MYB52(1)    <------------MYB.PH3(1) ------>ZmHOX2a(1) ==============================bZIP_DOF--------->ARR11(1)   <-----------GT1  --------->ARR14(2)   ---   cttgcatttgagcaagatttgtgacgtagcgaacaagaaaagaaacggtttcttcttcttcttaaccgttttccctccatatatcctccttacattcaaa  11920300  Previous    Next  AGI:  At1g32890.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 1.2e-37 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus) Range:  from: 11914947    to: 11919825    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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