Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                    ------->TEIL               --------->ANAC46               --------->ANAC58          --------->TOE2(3)         --------->YAB1                                                             <---------GLK1(1)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                         --------->GLK1(1)    <xxxxxxxxxxxxxxxxsmallRNA(i)                                                --------->HSFB2a(2)--  <---------At4g35610                                     --------->YAB1     <----------DOF2       <-  <------NtERF2--------->ANAC58                     --------->ANAC58        <---------DAG2   <-------  --------->At4g35610                               --------->ANAC58  --------->HSFB2a(2)    <------- ----------->RAV1(1)                                --------->ANAC46  <---------HSFB2a(2)    <-------   gggcagcacaaacatcaacgcatcttgtattccattcagttttcttcaatctgtaggccatcttaacaagttccaaaaccttttggaattctatgtcgtc  11899300                                             -------->ATHB1                                             <--------ATHB1                                             --------->YAB1                                             <---------ICU4                                             --------->ATHB51                                            --------->ICU4                                            <---------ATHB12                                            <---------ATHB51             <-------TEIL   --------->ARR14(2)     --------->GLK1(1)                   ------------>ATHB5             --------->CCA1(2)     <---------GLK1(1)                   <---------------AGL15         <---------ARR14(2)          -- ------->ALFIN1                          --------------->AGL15         --------->ARR14(2)       ----- --------ANAC46                         ============================================================= --ANAC58       ---------->DOF2      <---------GLK1(1)   --------->TOE2(3)    --------->YAB1   xxxxxx --ANAC58   <xxxxxxxxxxxxxxxxsmallRNA(i)----------------->AGL3 --------->TOE2(2)        --------->ARR11(3) --ANAC46  <------ZmHOX2a(1)         --------->GLK1(1)<-----------GT1----------->ARR10  <---------ARR14(2)   tgtgtggaaatcaggaactaaagacttgaagtcttctgggtttccaataattgtattcacctcaatctgcgaagatacaataacattacaaatcttgaga  11899400                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                   ----------->GT1                          ---------->DOF2                    ----------------->AGL3                    ===============================MADS_MADS          <---------CCA1(2)    --------->GLK1(1)   <---------ARR11(3)    <---------AHL20(2)   --------->ARR14(2)    --------->AHL20(2)   --------->ARR11(3)--------------->AGL15                                             xxxxxxxxxxxxxx   <---------ARR14(2)<---------------AGL15                                            ------>ZmHOX2a(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                             <------ZmHOX2a(2) ------->At4g35610  ----------------->AGL2             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ----->DOF2  --------->TOE2(3) <---------GLK1(1)      -------->P                    <---------ARR11(3) ====================================MADS_MADS ---------->DOF2  --------->YAB1      --------->ARR11(3) xxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------------AGL15--------->TOE2(3)       <-----------GT1  <---   aagcagaacttcaaatctcaaaaccatttaaagaattctgtaaatagacaaaagcttacctcagaaacatcatttacaaggtttacgatcttgaaaaact  11899500                                                                                            ---------                                                                                ------>MYB83---------                                                                                ------>MYB46(1)                                                          --------->TOE2(3)   --------->MYB46(3)                                        <---------YAB1    <----------DOF2    --------->ANAC58       <            <---------DAG2        --------->ARR11(3)    <---------YAB1<-----------RAV1(1)<---------GLK1(1)           <---------ANAC58       <---------ARR14(2)   <---------ARR11(3)    --------->ANAC58 -------           <---------ANAC58xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      ------->MYC3       --------->ARR14(2)   <xxxxxxxxxxxxxxxxsmallRNA(i)   --------->ARR14(2) --------->DOF5.7(2)    ----------->RAV1(1)   <xx xxxxxxxxx>smallRNA(i2)   <---------ARR11(3)         <---------MYB52(1)--------->At4g35610  <-------- ------LBD16<----------DOF2<---------YAB1       <---------GLK1(1)    <-------MYC3       <---------ARR14(2)   ctggagtagtagtgcttttccacttcaatatcaatggatattcagattggaattcgttatctttaactccatatgctgcaccaaatgctggaactgcgct  11899600 ------->GAMYB                             <-----------GT1 >ZAT18                               --------->YAB1 >ZAT14                       ------>ZmHOX2a(1)                                               ------- ---------ALFIN1          <---------ARR14(2)                                                  <------ -->At4g35610             --------->ARR14(2)    <----------DOF2                          <xxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   <---------ATHB12                                  <---------YAB1 -ZAT18            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                   *TSS<------------CBFxxxxxx   caacacccatattgttagcgctagtccaaatcctctcaaatcatatttctcttttgcccaagttttctcgtccattctcagaattgaatttgatagaaca  11899700                              --------->ZAT14                              <---------ZAT14                              <---------ZAT18                            --------------->AtSPL8                           <---------ANAC46                       <------MYB83                     --------->ALFIN1                     <---------MYB52(1)                     <--------P                    <-------GAMYB                   <---------MYB46(3)                                    <---------ARR11(3)        <----------DOF2<------MYB46(1)                                   <---------ARR14(2) -->ZAT14       ------------>AtMYB77                                     --------->ARR14(2) ---ZAT14       <---------ALFIN1                        ------------>CBF --------->ARR11(3)  xxxxxxxx xxxxxxxxxxxxsmallRNA(fl3)<---------DEAR3(1)  --------->At4g35610  ---------->DOF2   ---------------- xxxxxxxxxxxxxxxx>smallRNA(fl3)             --------->YAB1   <---------ICU4      <----------DOF2   ctgaatgcttctttacccccacggttgggctgtgtacatctcaaaatcagaagcatgctgcaatcttggcaaaggtatcttctcttttccatatggtgtc  11899800                              --------->ANAC58                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                  <x                        <---------ZAT14                                   <---------TOE2(2)       <--                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                  <---------MYB52(1)        ---                 --------->ZAT6<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    =============================HOX2a_HOX2a              <---------WRKY12--------->ANAC46                          =============================              <---------WRKY38(1)      <----------DOF2                  ------>ZmHOX2a(1)     =======   --------->GLK1(1)    --------->ZAT14<---------DAG2                  --------->TOE2(3)      ------>ZmHOX2a(2)   <---------GLK1(1)<xxxxxxxxxxxxxxxxsmallRNA(i)                     ------>MYB46(1)          ======= xxxxxxxxxxxxxxx>smallRNA(le3)--------->ANAC58                  <-----------GT1             <-------- ->AGL1      --------->WRKY18(1) --------->ANAC46       ------->GAMYB------>MYB83           ---------   aaaagaattccttcagtcaacactactgcagcaagacacaacttttcttcatcttcaacagcaagttcaccttccttaggttttaaaaacaatcgatctt  11899900                                                                     <-------GAMYB                                                                    <---------ANAC46                                                                 <----------DOF2                                                          <----------DOF2                                                         ------>ZmHOX2a(2)                  <---------ARR14(2)                     <---------HSFB2a(1)  ======================HOX2a_HOX2a                      --------->HSFB2a(1)  <------ZmHOX2a(2)   ------>ZmHOX2a(1)                 <------ZmHOX2a(2)  ===========================HOX2a_HOX2a               <-----------ARR10 --------->ARR11(3)   <----------DOF2                  --------->GLK1(2) <---------ARR11(3)<------ZmHOX2a(2)                   <---------ARR11(3) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                   --------->ARR14(2) -------HSFB2a(2) --------->ARR11(3)                   --------->ARR11(3) ------>HSFB2a(2) <---------ARR11(3)                   --------->ARR14(3) ========HOX2a_HOX2a------>ZmHOX2a(2)                  <---------ARR14(2) =======================HOX2a_HOX2a                    <---------ARR14(3) ============================HOX2a_HOX2a              <---------GLK1(2) -ARR11(3)        --------->ARR14(2)          <----------DOF2   <---------DAG2 >ARR11(3)       <------ZmHOX2a(1)---------->DOF2     <------ZmHOX2a(1)      --------->ZAT18<-------TEIL   cgagatcaccaagagtataggatcctttactagcccaaaagtatggttcttttacaggatctttcccctttcgttgaagttccctatgaacaggttcaca  11900000                                       <-----------GT1                                      <---------YAB1                                    <--------HAHB4                                         <---------                                    <---------ICU4                                    <-----------GT1                                    --------->YAB1                               --------->ICU4                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                 <---------YAB1                         <---------ZAT14                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                         --------->REM1(2)                  <----------DOF2    --------->YAB1                         --------->ZAT14                    --------->TOE2(3) <---------ATHB12  -----                ---------->DOF2    <---------YAB1  ----------->GT1      ----------->GT1 --------->ZAT6   ttgaattcttgtatgaacaaaagacagtgtagagactattattacaggttttatagtaaatactttaaaaacgattgtaaatcatgtttaacacttttaa  11900100                                                                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                          <----------DOF2                                                                 --------->AtLEC2                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     ----                                                     <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <------                                          ----------->GT1     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                         <---------TOE1(3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <----------DOF2      --------->WOX13(1) <---------TOE2(3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---- -DOF2               xxxxxxxxxxxxxxxx>smallRNA(i) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)         ------- ----->DOF2         <---------ATHB12  <---------AHL20(2) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <-------   aagcttttaaaatcccttataaatcattcaatgccactaatttatggtttaaaaacgattgtaaaccatgcagacacttttaaaatcccttgtaaatcat  11900200  Previous    Next  AGI:  At1g32840.1    Description:  transposable element gene. similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G47260.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G04010.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G44500.1); similar to hypothetical protein 26.t00072 [Brassica oleracea] (GB:ABD65017.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653) Range:  from: 11896526    to: 11899675    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version