Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   <---------HSFB2a(2)                 --------->HSFB2a(2)   ---------->DOF2            <----------DOF2       ------>ZmHOX2a(2)                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            <---------DAG2       --------->CCA1(2)                          <---------At4g35610         --------->ANAC58        <------ZmHOX2a(2)            --------->ANAC46                    <--    --------->HSFB2a(2)         <---------AGP1                <---------ALFIN1<----------DOF2     ---    <---------HSFB2a(2)         <---------ARR11(3)<---------ANAC58      <-----------GT1        <xxxxx ---------AHL20(2)              --------->ARR11(3)<---------ANAC58  <----------DOF2          <------- -NtERF2 --------->ANAC58       --------->AGP1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  ---------->DOF2   atttttttggaacgcttttccaaaacatatgtaagatctaacaaagtcatttccttgttaatccacacatcttttttctgctttcccttcaaagtctgat  11894400              <----------DOF2              <---------DAG2           <---------ALFIN1        --------->ANAC46     <-----------GT1 <----------DOF2 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               ------>ZmHOX2a(1) -------ARR11(3)                                  ----------->RAV1(2) ------>ARR11(3)   <----------DOF2             <---------ANAC58                      --------->YAB1 xxxxxxxxxxxxxxxxxxsmallRNA(si3)               <---------ANAC58             ------>ZmHOX2a(1) --YAB1--------->MYB46(3) <----------DOF2   <---------WOX13(1)  --------->ATHB12    <---------YAB1   tatcttttatccaccacttttctttcttctttctcttcacatttggattgcttcctgatgcatcatccattggaagtcctgttgttatgataaactctct  11894500                                                     <--------P                                                    <-------GAMYB                                                   <---------MYB46(3)                                                   <------MYB83                                              <---------YAB1                               <---------ANAC58                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                       <---------YAB1                <-------TEIL              <-----------TGA1                   --------->YAB1<---------ANAC46              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) --------->MYB55(2)       --------->ICU4 <---------ANAC58     --------->GLK1(2)            --------->TOE2(3)<------MYB46(1)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    <---------GLK1(2)          --------->ANAC46<-----------RAV1(1)<---------LBD16     --------->CCA1(2)   cagggagaatcgcataggttgatcagcaaatacaaaccacaattcgtcattgttggttagtattcttctctggagtaaatgatgaacgatatggcttgaa  11894600                               <------ZmHOX2a(1)                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    ------>ZmHOX2a(1)                      ----------------->AGL1                                         <---------YAB1                      <-----------------AGL1                  --------->ZAT6    <----------DOF2                   --------->GLK1(1)                   --------->ALFIN1    ---------->DOF2               <---------At4g35610                  <---------TOE2(3)   <----------DOF2       <-------TEIL<---------ARR14(2)   --------->GLK1(2)   <xxxxxxxxxxxxxxxxsmallRNA(i)   aatgttaagtccatttcagcgaattccactataggacccaagaatgtgtccattaatgtgttgaactctatcggctctaaagctttcctgatagtcgaga  11894700                                                             --------->KAN4(1)                                                             <---------KAN4(1)                                                         <------MYB46(1)                                                         <------MYB83                                                  <---------ANAC46                                                 ------>NtERF2 --------->GLK1(2)                 <----------DOF2              <---------At4g35610             ------->TEIL                     --------->At4g35610                             -------          <---------YAB1               xxxxxxxxxxxxxxxx>smallRNA(i)                    --------------        <------ZmHOX2a(1)            <-----------GT1   <--------P <----------DOF2     ---------------      <---------TOE2(3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<---------KAN4(2)     <---------GLK1(2) *TSS   caattttgaaggatgaatgctttgatacccttgtaatattatctacttcgctgcctggttggaacaatcttttagggaagaacagtttctttgtactcat  11894800                     --------->TOE2(3) -->YAB1           <-------TEIL       --------->At4g35610           <-----------GT1               --- ->AtSPL8     --------->AHL20(2)      <---------At4g35610       ----------->TBP               <------ ------>WRI1  <---------AHL20(2)     <---------TOE2(3)     ----------->GT1                   ------->TEIL   atttctcaaaacctgattaaatacattaacacagtcattaagctaacacagttttttgaaatggttttaaaaaccatttttgtaaatctattatgcattt  11894900                                            --------->TOE2(3)                                            <----------DOF2                                         --------->ARR11(3)                                         <---------ARR11(3)                      <---------ICU4 ---------->DOF2                                --------->ANAC46 ------->ID1    --------->YAB1  ----------->GT1                         ---------->DOF2 -----TBP --------->YAB1     --------->ANAC46                <-----------GT1 <---------ICU4       <--   gtagttttcgaaacataaacatagtcattacaagtcgtttaaagaactttaaaaacccttgtaaaaccatttttcaaagtcattacaagtcgttttaaga  11895000                                                                                           ----------                                            ---------->DOF2                          <----------DOF2                       --------->YAB1  <----------DOF2                           <-----------GT1                       <---------ICU4  ------>ZmHOX2a(1)  <-----------GT1      <---------AHL20(2) --------DOF2  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------MYB52(1)         --------->AHL20(2)   -   ctttaaaaacccttgtaaaacacagtcattactccataatcctttttaaagaccgttttgaaaccattccaaaaacaaaattttaatctttttcaaagaa  11895100                                                                             <------ZmHOX2a(2)                                                                            <---------ARR11(3)                                               <---------ATHB12             --------->GLK1(2)                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                              --------->ANAC46              <---------ARR14(2)                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       --------->AHL20(2)                                        ------>MYB83                        <---------AGP1    --------->At4g35610                 -------->P                          --------->ARR14(2)    <---------At4g35610                 ------>MYB46(1)                     --------->ARR11(3)   ------->GAMYB                     --------->MYB46(3)                    <------ZmHOX2a(1)  --------->MYB46(3)        <----------DOF2  --------->WOX13(1)      <---------ANAC55(2) >DOF2       ----------->GT1<---------DAG2<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)------>ZmHOX2a(2)------ -------->MYB52(1)     <-----------GT1--------->AtMYB61        --------->AHL20(2) --------->AHL20(2)   cacaaccgctgaaaatagaaacaaaaaacccttttccaaaccaactccaatcaactggtaacccataaattaagtgaggatctataaattaaaacacaaa  11895200                       <---------TOE1(3)                <---------At5g28300                                   --------->ARR14(2)       --------->WOX13(1)                                             <---------ARR14(2)      <------    --------->TOE2(3)  <---------TOE2(3)                         ----------->GT1              <------   --------->YAB1     ---------->DOF2                       ------->GAMYB                <----------DOF2  <---------ATHB12<---------ZAT6  <----------ID1         ----------->RAV1(1)       <---------ARR11(3) --->GLK1(1)   <-----------GT1    ----------->GT1       --------->REM1(1)          --------->ARR11(3)   tccaaacatcaatctatttactgttaaagtttcaaaacgaaaaaactttgaaattgctacaacagagaagtaaatcggcatttgaaatcttctttgaagg  11895300  Previous    Next  AGI:  At1g32830.1    Description:  transposable element gene. similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT3G30450.1); similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT2G04970.1); similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT2G14140.1); similar to Agenet domain containing protein [Brassica oleracea] (GB:ABD65016.1); contains InterPro domain Protein of unknown function DUF1299; (InterPro:IPR010725); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) Range:  from: 11891161    to: 11894800    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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