Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                    <xxxxxxxxxxxxxxxxsmallRNA(i)                                 <---------At4g35610                            --------->At4g35610                            <---------At4g35610                            <-------GAMYB                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                           xxxxxxxxxxxxxxxx>smallRNA(s)                          xxxxxxxxxxxxxxxx>smallRNA(s)                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)           --------->ARR11(3)                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <---------ARR11(3)                         xxxxxxxxxxxxxxxx>smallRNA(s)              <---------AHL20(2)             xxx                        xxxxxxxxxxxxxxxx>smallRNA(i)               --------->AHL20(2)            xxxx                     xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          <---------AHL20(2)     --------->ATHB51                     xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          --------->AHL20(2)     <---------ICU4                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         <---------YAB1          --------->YAB1           <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <---------ICU4       --------->ZAT14 ----------->HVH21      xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    <---------ATHB12       <---------ZAT14 <xxxxxxxxxxxxxxxxsmallRNA(i)      <---------ZAT6 --------->RVE1(1)<--------HAHB4      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   --------->ICU4   <---------WRKY18(1)<xxxxxxxxxxxxxxxxsmallRNA(s)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)<---------YAB1 -------YAB1<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxxxxx ----MYB52(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --------->ICU4   atgtttgactgtagagcaaatttctgtgacagttgagcaggtttttcaataaccttcttgtgttataatttaaaaaatccttgtaaaatcattattaagt  11888000              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)             <-----------GT1            <---------YAB1          <---------ICU4                                                                            <         --------->ICU4                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      <---------YAB1                              <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   --------->ARR11(3) --------->ATHB12                     <----------DOF2             <-----------RAV1(2)  <---------ARR11(3) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   ------>ZmHOX2a(1)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   - xxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->ARR14(2)        ---------->DOF2 <---------ATHB12       -- x>smallRNA(se3)                  <---------ARR14(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)          <-   cagtgattgtgcttattacaggctgagactacttcaaatccttttgtttctcattctgtccctaatgctcaggtactaatcgttttaaaaatccttgtaa  11888100                                                    <---------TOE2(3)        <---------TOE1(3)                           <---------TOE1(3)                      <---------ICU4        <---------TOE2(3)                      --------->ATHB51                            <--------HAHB4       <-----------GT1                         <--------HAHB4                              --------->ATHB51     <---------YAB1                            <---------ICU4                             --------->ICU4   --------->ATHB51                           --------->ICU4                              <---------YAB1   <--------HAHB4                             <---------YAB1                            --------->YAB1   <---------ICU4                           --------->YAB1                              <---------ICU4  <---------YAB1                            <---------ICU4                             --------->ICU4  --------->ICU4               <---------ARR11(3)  <-----------GT1         <---------ARR11(3) ---------ICU4         <----------DOF2     --------->ICU4    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) -------->YAB1   <-----------GT1           <---------ATHB12  <-----------GT1           <---------ATHB12 ------->ICU4    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <-----------GT1--------->ARR11(3) --------ATHB12 <-----------GT1--------->ARR11(3)<---------YAB1    <----------DOF2  xxxxxxxxxxxxxxxxx   aatcattattaacgtttttaaaccccttttaaaaatccttgtaaaatcattattaacgtttttaaaccccttttaaaaatccttgtaaaatcattattaa  11888200                                                                                              -------                                                 <---------YAB1                  ------>ZmHOX2a(1)                                             <---------ANAC58                    <----------DOF2               <-----------GT1               <---------ANAC58               --------->YAB1<---------ARR11(3)              <---------YAB1            ------>ZmHOX2a(1)                  --------->ICU4 --------->ARR11(3)     <---------WOX13(1)                 <----------DOF2               --------->ANAC55(2) --------->GLK1(2)   --------->ATHB12                 <---------ARR14(2)              <-----------RAV1(2)  --------->RVE1(1) xxx>smallRNA(se3)                  --------->ARR14(2)    ------->TEIL----------->GT1    --------->CCA1(1)   gtcagtgattgagtttattacaggttgagacgacttcaaatccttttgcttctcattctgcatctactactcaggtaataatccttttaaaaaatcttgt  11888300          <---------TOE2(3)          <---------TOE1(3)       <---------YAB1                            --------->AHL20(2)     <--------HAHB4                              --------->ATHB51     <---------ICU4                             <---------YAB1                                -------     --------->ATHB51                           --------->ICU4                                <------    --------->ICU4                            <---------ICU4                                  <------    <---------YAB1                            --------->YAB1                                  <------NtERF2  --------->YAB1                 --------->ARR11(3)    <---------YAB1   <---------TOE1(3)     -------  <---------ICU4   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             *TSS  <--------P     <xxxxxxxxxx --------->ICU4    <-----------GT1           --------->ICU4       <---------YAB1<----------DOF2 ----- <---------ATHB12 <-----------GT1<---------ARR11(3)    <---------TOE2(3)<---------TOE2(3)<xxxxxxxxxxx ---->GT1<-----------GT1 <----------DOF2     <---------ATHB12    <---------TOE2(3)  <---------AHL20(2)   aaaatcattattaacgtttttaaaccccttttaaaaatccttgtaaaatcattatttaagatagatttatgtttgaggtaagctttttattttggcagcc  11888400                         --------->ALFIN1                         <---------ANAC46                       <---------ANAC58                       <---------ANAC58                       <---------ANAC46       xxxxxxxxxxxxxxxx>smallRNA(s) -->At4g35610          <---------ANAC55(1) ---ZAT2              <-----------------------TaNAC69(2) ---At4g35610  --------->ATHB12        --------->ARR11(3)  ------->GAMYB  <---------ANAC58 -->ZAT2    <------ZmHOX2a(1) <---------ARR14(2)        --------->MYB52(1)<---------ANAC46         <- xxxxxxxxxxxxxsmallRNA(le3)   ------->TEIL             <---------WRKY12  ---------->ID1          <--- ---->DEAR3(1)<---------YAB1  --------->ARR14(2)       <---------WRKY38(1)<---------ANAC58 --------->ANAC55(2) xxxxxxxxxxxxsmallRNA(si3)   <---------CCA1(2) <---------YAB1           xxxxxxxxxxxxxxxx>smallRNA(i)   gaggttaacctctaggattattgaggcgtgtgtatctgaaacatctagtattcttgatcaacggtattctagttttgcgttttcaacaggtttaagtgat  11888500                                                            <-----------ARR10                                                          --------->LBD16                                                         <---------ANAC58                                                         <---------ANAC58                                                         <---------ANAC46                                                        <---------LBD16                                                    <---------O2                                                    --------->O2       ---------->DOF2           --------->ATHB12                         --------->ANAC46   --------->ZAT14     <----------DOF2                              <-----------GT1 <---------ZAT14<----------DOF2 <---------GLK1(2)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <---------ZAT2 --------YAB1                    ---------->DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    <-------TEIL ------At4g35610           ---------->DOF2    xxxxxxxxxxxxxxxx>smallRNA(s)     --------->ZAT2  ------   gctgattctttgtttattggaaaatttttcaaagacaaagatgaaatggtattcacgttgcggatgtttgcagtgaagcacagctttgagtttcatacag  11888600                                                                                   --------->LBD16                  <---------KAN4(2)                                              ------>ZmHOX2a(2)         ----------->HVH21                                                      <------ZmHOX2a(2)        ------>ZmHOX2a(2)                                                 <------MYB83       <------ZmHOX2a(2)                                                  <------MYB46(1)       --------->GLK1(1)                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <---------ARR14(2)                                                 <---------AtMYB61      --------->ARR11(3)                                                 --------->ALFIN1      <-----------ARR10                                                  <---------MYB46(3)      <---------ARR11(3)                                                 --------->MYB55(2)      --------->AGP1                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)      --------->ARR14(2)                                   <---------ANAC58    --------->ARR14(2)      <---------AGP1                                       <---------ANAC58    <---------ARR14(2)     <---------CCA1(2)                                     <---------ANAC46  <---------MYB46(3)     --------->At4g35610          --------->ICU4      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <--- ----->GT1  <---------O2  --------->ATHB12     <---------MYB46(3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   tgaaatcagatctcacgaggtatgttcttcattgtattgatgaaaactgtagttggagactacgtgcaactagggctggtggatccgagagttatgttat  11888700                                                                     <------ZmHOX2a(1)     <---------                                                                 <---------AtLEC2       --------->ANAC58                                                             --------->At4g35610        --------->ANAC58                                                             <---------At4g35610        --------->ANAC55(2)                                                     <-----------HVH21                  <---------ANAC55(2)             --------->YAB1            <------ZmHOX2a(1)    --------->GLK1(2)       --------->YAB1      <---------YAB1                 <---------TOE1(3)   --------->ANAC58         <---------WOX13(1) ------LBD16 <---------ICU4          <---------TOE2(3)   --------->ANAC58    <------ZmHOX2a(1)   tcggaagtatgttagtcatcacagttgtgactcttcattaaggaatgttagtcatcgtcaagcatctgcaaggacattaggaagattgataagtaaccat  11888800                                                                                     <---------ANAC58                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                            <---------ANAC58           <---------HSFC1(2)                                                        <---------ANAC46           --------->HSFC1(2)                                              --------->ATHB51           <---------HSFB2a(1)                          <------ZmHOX2a(2)  -------->ATHB1           --------->HSFB2a(1)                         <---------ARR11(3)  <---------ICU4        xxxxxxxxxxxxxxxx>smallRNA(s)       --------->ICU4                 --------->ICU4        ---------->DOF2         <---------At4g35610    --------->ARR11(3) <---------ATHB51    <------ZmHOX2a(1)           --------->At4g35610---------->DOF2        <---------ATHB12 --GT1 <------ZmHOX2a(1) <---------MYB59   --------->AHL20(2)           --------->WOX13(1)   tttgaaggaggaaagcttcccctcagacctaaacagctgatagaaatatttagaaaagatcatggagttggaatcaattattcgaaggcttggagagttc  11888900  Previous    Next  AGI:  At1g32820.1    Description:  transposable element gene. Mutator-like transposase family, has a 1.6e-83 P-value blast match to Q9SKL7 /23-182 Pfam PF03108 MuDR family transposase (MuDr-element domain) Range:  from: 11888369    to: 11890357    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version