Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                   ------>ZmHOX2a(1)                                                --------->TOE1(2)                                               ------>ZmHOX2a(2)                                              <------ZmHOX2a(2)                                             <---------ARR14(2)                                             --------->ARR14(2)                                             --------->ARR11(3)                   --------->YAB1                                             <---------ARR11(3)                 --------->AHL20(2)                                       --------->At4g35610                  ----------->GT1<---------                                       <---------At4g35610         --------->HSFC1(1)   --------->TOE1(3)          <---------ZAT6           <-----------TGA1                --------->HSFB2a(2)  --------->YAB1 -ZAT14 ----------->GT1            <-----------HVH21               <---------HSFB2a(2)  --------->TOE2(3)   agcctccatctagtgaaactactattcccattctcttcgtcatctaagatcctacaaactcaattccctctagaaatttagaaaaaataatcttaactat  11855800                                                                                                    -                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    -                                                         <---------ARR11(3)                        --                                                         --------->AHL20(1)   --------->WRKY18(1)  --                    --------->ANAC58                     <---------AHL20(1)  <-----------HVH21     --                    --------->ANAC58        ---------->DOF2            ---------->DOF2            ---                 <------ZmHOX2a(2)     <---------------AGL15         --------->At5g28300        -----                <---------ARR11(3)     --------------->AGL15        ----------->GT1 --------->At4g35610    <<<<<<<ZML2<------ZmHOX2a(1)  <----------DOF2<---------GLK1(1)  --------->TOE1(3)        -------- --GT1      <---------LBD16  <---------At4g35610 --------->GLK1(1)  --------->TOE2(3)     --------->TOE2(3)   accctagaacatgtccaggatcactcaagactgctccttttctacttaaagaaatccaaaatattcaaaaccgtaaatcggtcatgagctagcctaaatg  11855900         --------->STY1(2)    --------->ZAT6  ------>MYB83  ------>MYB46(1) -------->AtMYB61                                                                                 --- ---------MYB111(2)                                                                              ---- ---------MYB46(2)                                                                             <----- ---------MYB111(1)                                                                           ------- -------->MYB46(3)                                                                            <------ ------->ANAC58                                                        <-----------GT1        ------- ------->ANAC46                                                      <---------ICU4           <------ ------->ANAC58                                                   ------>MYB83              --------- ---->TEIL                               <---------ZAT14          ------>MYB46(1)         --------->YAB1 ---->ZAT18                              --------->ZAT14        --------->TOE2(3)      --------->WOX13(1) -->DOF2 <---------STY1(2)       <-----------GT1                <---------MYB59  <----------DOF2-----   caccaaacactagctagacagggacatctctagtttcacaaactgtagtaatccaaaattccacaacctaatatttccaatctctttgtcaattaagatc  11856000  --------->ANAC46 --->ZmHOX2a(1) ----->TOE1(2)                                                                          --------->ANAC58 -ZmHOX2a(2)                                                                            --------->ANAC58 -->ARR11(3)                                ---------->DOF2                         --------->YAB1 ---ARR11(3)                      <----------DOF2                                  <<<<<<<<<ARR1 -->ARR14(2)        --------->ANAC58   ============================================================== ---ARR14(2)        --------->ANAC58   <---------------AGL15                       <<<<<<<<<ARR2 -->ARR10   --------->YAB1  <---------MYB46(3)             --------->LBD16         <---------ATHB12 ->ZmHOX2a(2)      --------->WOX13(1)  --------------->AGL15                     --------->WOX13(1)   ctacaaaccaatactcagaatcactcaaggctgttccttttctacttaaagagacttaatccgaaatattcaaaaccgtagaacaatcataagctagaca  11856100                         <---------ETT(2)                    <---------ICU4                          ------->GAMYB                   <---------ATHB12                        --------->MYB46(3)                 --------->GLK1(1)                    --------->ANAC58         ======================             <---------HSFB2a(2)                     --------->DAG2         --------->ANAC58             --------->HSFB2a(2)               ---------->DOF2    <---------YAB1       --------------->AGL15              --------->LBD16  <---------MYB52(2)  ----------->RAV1(1)      ----------------->AGL2              ----------->GT1  <------------MYB.PH3(2)   <---------At4g35610   --------->ETT(2)----------->GT1 ----------->RAV1(1)--------->ANAC58   --------->GLK1(1)--------->YAB1   <---------ZAT14---------->DOF2--------->YAB1                <---   --------->At4g35610  --------->DDF1  <---------LBD16 <----------ID1    ---------->DOF2  ---------- ======================MADS_MADS     ----------->HVH21--------->ANAC58---------->DOF2--------->AHL20(2)   ggggcatctccagtttcagaaatcatgtcgacaatggactggaccggaaaaaagaaaagcaacaaactttgataaagaaagcaacatatatatacctgag  11856200                                                                                  ------------>CBF                                                               ------------>CBF --------->ANAC58                                                           ----------->GT1      --------->ANAC58                                                           --------->YAB1  --------->ANAC58                                                      ------------>CBF     <----------ID1                                                     <<<<<<<<<<<<<<<<<LFY  --------->ANAC58        -- ==RAV   <---------ANAC46                         <-----------GT1        <---------ATERF1(1)       <- ---ZmHOX2a(1)                                <---------ARR11(3)    <---------LBD16         ------>ZmHOX2a(1) ->RAV1(2)  <---------PCF2                    --------->ARR11(3)  --------->GLK1(2)  <------------CBF   gaagtctcgttgtgggaacccttgccattggattcagccatattcaaagatttaactacaatggtgacaatcgggagacgacaaggcaattgtccttccc  11856300                                                                             ------->TEIL                                                                             <---------ARR14(2)                                                                          --------->ANAC46                                                                     <---------MYB59                                                                     --------->TOE1(3)                                                                   ------>MYB46(1)       <---------ATHB12                                            -------->P--------->ARR14(2)       --------->MYB46(3)                                          ------>MYB83      -------->P            --------->TOE1(3)                 --------->ANAC58      ------>MYB46(1)       --------->TOE2(3)                 --------->ANAC46      ------>MYB83    --------->YAB1                          --------->ANAC58  --------->ANAC46   <---------ATHB12                     --------->YAB1--------->MYB52(1) ------->ARR14(2)  --------->WOX13(1)<----------ID1  ------------>CBF--------->TOE2(3)      --------- --------ARR14(2)------------>CBF---------->DOF2    --------->ANAC46 --------->AtMYB61     ----------   aaatccccaaccattaaaactcaatcaaaaccttcaaaagaaacaaaaaaaactacacaattacaagccaacctaaacggacctggaaacaaaaaaagct  11856400                                                        ------>MYB83                                                      --------->AtMYB61                            --                                                      ------->GAMYB                      <---------ZAT2                                                    --------->ANAC58                     --------->At4g35610   <----------DOF2            ------------>CBF      --------->ANAC58           <-----------GT1   ---- >DAG2                    <---------GLK1(2)     --------->YAB1      <------------CBF     <---------At4g35610 >DOF2                ---------->DOF2   <----------DOF2 ------>MYB46(1)  ------------>CBF--------->ZAT2   aacttctttatctgaaacttcatcaaaagagtctcaatttggctttaaaatcacaaccaaatcgaaaccccattgatcaattttcgagttaagctgagtt  11856500                                                                                       --------->TOE2(3)               --------->AHL20(2)                                                      --------->TOE1(3)        <------------CBF        --------->CCA1(2)                              <---------ANAC58   ---------->DOF2             <---------ARR14(2)         <---------MYB46(3)   <---------ANAC58     <  --------->YAB1<---------AHL20(2)--------->ANAC58  --------->ANAC55(2)     <----------DOF2       --- <---------ATHB12              --------->ARR14(2)   <---------ANAC55(2)<---------HSFC1(2)       <---- ------->WOX13(1) <------------CBF--------->ANAC58  <---------TOE1(1)  --------->HSFB2a(1)     <----- -------->CBF<XXXXXXXXXXXXXXXXXXXXMIR865-3P       --------->CCA1(2)    <---------HSFB2a(1)     <-----   gcaatcaaagcattggataaaattgaagaagacgatacgataccattcactgatacgagattgttggattggagggttctttcttgaaaccctaattgag  11856600        --------->At4g35610                                        <---------ARR14(2)        <---------At4g35610                                        --------->ARR14(2)        --------->HSFC1(2)                                        <---------HSFB2a(1)        <---------HSFC1(2)                                 <------NtERF2   --------->ANAC58                                      --------->ETT(1)    --------->ANAC58   --------->ANAC46  ----------->GT1                     <---------ANAC46    --------->ANAC58   --------->ANAC58 --------->DAG2                 <---------TOE1(1)   --------->LBD16 --------------------->WRI1   --------->ZAT2    <---------SPL7    <---------HSFC1(2) -------TEIL     <------NtERF2--------->At4g35610  <---------TOE2(1)  <---------TOE1(1) ------>ZAT18   --------->LBD16                <---------DEAR3(2) --------->HSFC1(2) -----------AtSPL8---------->DOF2       --------->SPL7 <-----------HVH21   <--------P ----TOE2(3)   --------->LBD16<---------ZAT2  --------------->AtSPL3  <---------ANAC46           <--- ----ANAC46   <---------LBD16 <---------At4g35610 --------->SPL7 ----------->ARR10              -----   ggtacaagtaagcttcgccggaaaggtaaaccagctcaatcggacgagacggtacgatgtcggagagaagttccgaggtaagcaaactctcaaatcggag  11856700  Previous    Next  AGI:  At1g32750.1    Description:  HAF01 (HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 1); DNA binding. Identical to Transcription initiation factor TFIID subunit 1-A (HAF1) [Arabidopsis Thaliana] (GB:Q8LRK9;GB:Q9LPI9); similar to HAF2/TAF1/TAF1B (HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY, TBP-ASSOCIATED FACTOR 1B), DNA binding / transcription cofactor [Arabidopsis thaliana] (TAIR:AT3G19040.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69722.1); similar to Transcription initiation factor TFIID subunit 1 (TAFII250) (GB:Q67W65); similar to hypothetical protein OsJ_021294 [Oryza sativa (japonica cultivar-group)] (GB:EAZ37811.1); contains InterPro doma Range:  from: 11846227    to: 11856241    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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