Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                  --------->ARR14(2)                                <---------ARR11(3)               ------------>AtMYB77               --------->MYB52(1)        ------>ZmHOX2a(1)            --------->ANAC58  ----------->ARR10            --------->ANAC58====================HOX2a_HOX2a            --------->ANAC55(2) --------->ARR11(3)                                          ------->TEIL  =================================HOX2a_HOX2a                 <----------DOF2           <-----------  <------ZmHOX2a(1)         <------ZmHOX2a(2)                 <---------ICU4             ------------ ---------------AtSPL8    <------ZmHOX2a(1)     --------->At4g35610             --------->TOE1(3) ----->DOF2 <---------ANAC55(2) <---------ARR14(2)      --------->TOE2(3)       --------->TOE2(3)   aagaggaacagagtaagtaacagttacaggatcagatattgtcctgtatcagccaaaaacttaatctttaacagctatgaaacctcaattactgaatcta  11796900                                                                      <---------ANAC46                                                                      <---------ANAC58                                                            --------->WOX13(1)                                                            --------->YAB1<----------DOF2                                                           --------->MYB46(3)                                                         ----------->RAV1(1)                                          --------->At4g35610         <---------ANAC55(2)     <------NtERF2                                          <---------At4g35610  --------->YAB1     --------->ANAC46                                    <-----------HVH21 --------->ANAC58<---------ANAC55(1)   --------- ----AGL15                       <---------ATHB12     --------->ANAC46<---------ANAC58      <-------- --->AGL15          ------->TEIL--------->GLK1(2)     --------->ANAC58--------->ANAC55(2) <----------   gaatacccattatccacttatgcatctaaaaccgaatcagtcgcatctgaaatcgaacgcaacaatcacattacgtctttatccactaaattggtcggag  11797000                                                                <---------MYB52(1)                                                               --------->LBD16                                                        ------>ZmHOX2a(1)                                                       --------->TOE2(3)                                                      ------>ZmHOX2a(2)              <---------At4g35610      --------->ICU4                                 <------ZmHOX2a(2)      <---------At4g35610    --------->YAB1                                  --------->ARR14(2)      --------->At4g35610   --------->ICU4                                   --------->ARR11(3)     --------->MYB59   <---------ATHB12         --------->At4g35610     <---------ARR14(2)  <-----------HVH21   <---------YAB1           ----------->RAV1(2)     <---------ARR11(3)<---------TOE2(3)      -------- >ETT(1)         ---------->DOF2           <---------ARR14(2) <---------ANAC55(2)    --------->ZAT2 -DEAR3(1)--------->YAB1    <---------At4g35610    <------ZmHOX2a(1)  --------->MYB59<---------ZAT2 -HVH21<---------ICU4   <-----------HVH21  --------->ARR14(2) --------->ANAC55(2)    --------->At4g35610   aaacaatgataatgagaagaaaagcctttcacctgaagaaaatcgaatccacaggatcctaaacccgtgatttaggtcaggtctctcagcagagcgaaag  11797100                                                                                           <xxxxxxxxx                                                                                       <xxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxsmallRNA(si3)                                                                                  <xxxxxxxxxxxxxxxsmallRNA(le3)                                                                                  --------->ALFIN1  <                                                                                  <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                 <xxxxxxxxxxxxxxxsmallRNA(le3)                                                                                 <xxxxxxxxxxxxxxxsmallRNA(si3)                                                                                 <xxxxxxxxxxxxxxxxsmallRNA(le3)                                                                                <---------ANAC46    <                                                               ----------->GT1  <---------ANAC58   <x      <----------ID1 *TSS <---------YAB1                     ---------->DOF2    <---------ANAC58   <x -->DOF2  ---------->DOF2 ------------>CBF         ----------->GT1         --------->CCA1(2)     <xxx   aaaaattgaagacaaagccctaattttcatcaatggatggagttttagtgaaatggtcaaaaacaaagaaaaatgagaaatggggtgagagaggctcgaa  11797200                                                          ------>MYB83                                                          --------->ANAC46                                                          ------>MYB46(1)                                                          --------->ANAC58                                                        <---------ALFIN1                                                        --------->AtMYB61                                                        --------->DEAR3(1)                                                       --------->MYB46(3)                                                      ------>NtERF2                                                      <---------ATERF1(1)                                                   ------>NtERF2                                                   <---------ATERF1(1)                                                   <---------RAP2.3(1)                                                  <xxxxxxxxxxxxxxxsmallRNA(le3)                                                  --------->ANAC46                                                  <xxxxxxxxxxxxxxxsmallRNA(fl3)                                                  <xxxxxxxxxxxxxxxsmallRNA(se3)                                                ------->GAMYB                                               <xxxxxxxxxxxxxxxxxsmallRNA(le3)                                               <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                               <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                               <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                              <---------At4g35610                                              --------->At4g35610                                              ----------->RAV1(2)                                              --------->ZAT2                                              <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                              <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                              <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)            <------ZmHOX2a(2)                 <xxxxxxxxxxxxxxxxxxsmallRNA(si3)           <---------ARR11(3)                 <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <------ZmHOX2a(1)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       <-----------RAV1(2)               --------->ANAC58 --------->ANAC58     --------->AtMYB61                   --------->ANAC58--------->ABI4(1) <---------ETT(2)                    --------->ANAC46<---------ALFIN1 xxxxxxsmallRNA(si3)                 --------->ANAC58--------->RAP2.3(3) xxsmallRNA(le3)                     --------->ANAC58--------->DEAR3(1) --------->TOE2(3) xxxxxxxxxxxxxxxsmallRNA(le3)     ------>MYB83<---------ZAT2           <---------At4g35610 xxxxxxxxxxxxxxxsmallRNA(si3)     ------>MYB46(1)<xxxxxxxxxxxxxxxxsmallRNA(s)                     --- xxxxxxxxxxxxxxxsmallRNA(le3)     -------->P --------->MYB52(1)     <---------MYB52(1)            --- xxxxxxxxxxxxxxxsmallRNA(se3)   --------->AtMYB61<xxxxxxxxxxxxxxxxsmallRNA(i)      --------->CCA1(2) xxxxxxxxxxxxxsmallRNA(s)       --------->TOE1(2)--------->ZAT18 *TSS  --------->At4g35610 <---------TOE2(3)   ctctcgacctcaggatcactcagtagctatgagacctacgcgctagccaactgcgccaccaccccattttgttagcttaattcagatataactaatgaaa  11797300                                                       <----------DOF2                                             --------->DAG2                                             --------------->AtSPL8                                             --------------->AtSPL3                                             <---------------AtSPL8                <---------ARR11(3)   <---------HSFB2a(2)          ------>ZmHOX2a(1)<---------TOE1(2) <---------------AtSPL3 ------>TOE2(3) --------->ARR11(3)   --------->HSFB2a(2)      --------->WOX13(1) ------>TOE1(3)*TSS   <-----------HVH21    ---------->DOF2--------->YAB1      ---------->DOF2  <-----   cctaaaatgttcctacaaggtctcggtcatatgttctgtctgggagaaaggtacctcctttcatcaatctatagtcagaacaaagaacaatctctctctt  11797400                          --------->ANAC58                               <---------ZAT14            -                          --------->ANAC58   <---------ANAC46            --------->ZAT18          <--    --------->YAB1  --------->AtMYB61       --------->ALFIN1             --------->ZAT14     -------- -----DOF2         --------->MYB46(3)      <-----------HVH21        <----------DOF2   ---------->DOF2   tctcgttcataaatctccaaaaccactcgagcaagaagagaaccgagtcgggcaatcgcaaatttagtttctttgttcactgaagcttcaaaggtatgac  11797500                                                                                                 <---                                                                                               <-----                                                     <------MYB83                             <------                                                     <------MYB46(1)                          -------                                      <---------ATHB12      --------->CCA1(2)         --------->YAB1                                    --------->WOX13(1)     <---------AHL20(1)      ------>MYB83------                                ----------->GT1 <---------TOE2(3)                  ------>MYB46(1) --                               <---------HSFB2a(2)   ----------->GT1  <-----------GT1 <---------ICU4 -------->ATHB12      <---------GLK1(1)   <---------ATHB12 --------->ARR11(3)    --------->TOE2(3)<-- --------DOF2         --------->GLK1(1) --------->WOX13(1) <---------AHL20(2)    <---------MYB59 <--- --->HVH21 ---------->ID1      --------->HSFB2a(2) <---------WOX13(1)<-----------GT1 <---------ATHB12   ctttattgattttgttttttttggatttctcttctcgtaaatcaatcactgagattggtaatatatgggttttagcctcttaacctaatcatcgaattaa  11797600         <----------DOF2       <-------TEIL      <---------ARR11(3)     <---------GLK1(2)   <---------TOE2(3) ------ATHB12 ------GT1 ---AHL20(2)                                      --------->ANAC58 -->AHL20(2)                                      --------->ANAC58 --->WOX13(1)                                   ---------->DOF2 ------->WOX13(1)                            --------->ANAC58 -------ICU4                                 --------->ANAC58 ------YAB1                                ---------->DOF2<-----------GT1                <---------YAB1   tcattcaggttctttgagtatcgaacttctctgttttctcaacttgaaagcaaagcaaaataacatttttagttgtatcgattagctaattttgattctt  11797700                                  --------->GLK1(2)                                  ------->TEIL                                 <---------ARR14(1)                                 <---------GLK1(2)                              <---------TOE2(3)                             <-----------GT1                     <---------WOX13(1)                    <---------ANAC58                 ------>ZmHOX2a(1)                    <---------ANAC58         <------MYB46(1)               <---------ANAC58                   --------->ATHB12          <------MYB83                  <---------ANAC46     <----                 <--------P  --------->MYB52(1)   ------>ZmHOX2a(1)        <---------ANAC58   <------                 <---------WOX13(1)         --------->MYB59        <-----------GT1  <---------ANAC46   tggaagtcttacatttctggttgattgctattaacgaatctctaatttggtcctcctctagttgcaaaattacatttgtgtgtgttttgtgtcttcagct  11797800  Previous    Next  AGI:  At1g32610.1    Description:  hydroxyproline-rich glycoprotein family protein. similar to VQ motif-containing protein [Arabidopsis thaliana] (TAIR:AT2G35230.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN80329.1) Range:  from: 11795589    to: 11797121    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g32620.1    Description:  pre-tRNA. tRNA-Met (anticodon: CAT) Range:  from: 11797228    to: 11797265    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g32630.1    Description:  unknown protein Range:  from: 11797315    to: 11798582    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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