Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                        <---------AHL20(1)                      --------->ARR11(3)                ----------->GT1                <---------ANAC55(2)                --------->ANAC55(2)               <-------TEIL                        <---------At4g35610            --------->GLK1(1)                      --------->At4g35610            <---------GLK1(1)         ----------->GT1        --------->ANAC46--------->ARR11(3)         ----------->RAV1(2)     ----------->HVH21--------->AHL20(1)        <<<<<<<<<TBF1    --------->HSFB2a(2) <---------ARR11(3)--------->HSFB2a(1)    ------>ZmHOX2a(1) <---------ARR11(3)  <---------HSFB2a(1)    <---------HSFB2a(2)<---------CCA1(2)  --------->HSFC1(2)                 ----------->GT1 --------At4g35610    <---------AHL20(2)  <---------HSFC1(2)                --------->ANAC46   tagctcctcgacggaaattcgtaatatatctccgattaatcggaaaattcttcttctgaagcgaagtacaaaatgtacagggcaaaatcagagccatagt  11774100                                                                                    --------->AtMYB61                                                                                   <---------ATHB12                                                                                  -------->P                      <----------DOF2                                            <-----------GT1                    <------NtERF2                                                --------->WOX13(1)                  <---------RAP2.6(2)                                          --------->MYB46(3)                 <---------LBD16                                               <---------ATHB12         <---------YAB1                                                       ------>MYB83     --------->ARR14(2)                                                       ------>MYB46(1)     <---------ARR14(2)                                                      --------->WOX13(1)     -     --------->ARR11(3)  <-----------GT1                            ---------->DOF2--------->MYB46(3)    <------ZmHOX2a(1)<---------ANAC46            --------->CCA1(2) *TSS    ------------>CBF        <-   tttggaggattttgattttcgcggcttttactagtcgagaggttgaagaagataagagagtgtttctgagaaaagagaccaatcaaccattccactgcta  11774200                                                                                   <---------ANAC46                                                                                  --------->MYB55(2)                                                                                  <---------MYB46(3)                                                                                  <-------TEIL                                                                                 --------->ALFIN1                                                                                <------NtERF2                                                                                --------->ATERF1(1)                                                                               <---------DEAR4(2)                                                                               <---------ORA47(2)                                                                              <---------DEAR3(1)                                                                    <---------LBD16<---------ANAC58                                                                  <---------ARR14(2)                                                          --------->MYB46(3)  <---------DREB2C(2)                                                        <-----------GT1       --------->ALFIN1                                                      --------->AHL20(2)     <---------ABI4(1) <-----           --------->GLK1(1)           <-----------------AGL1     --------->ARR14(2)       <---------        --------->LBD16        <---------LBD16       <---------ATHB12  <---------MYB52(1)--------->GLK1(1)      <---------LBD16      <---------DAG2          --------->WOX13(1) --------->LBD16    <---------GLK1(1) -------->YAB1             <----------DOF2       ------------>CBF --------->GLK1(2)<---------ANAC58 --------ATHB12  --------->ANAC46--------->LBD16------>NtERF2 --------->AtMYB61<---------DEAR3(2) ---   aatcataaaccggaaatacaaaccaaaaacttttccggtttacaaaattcggccaattaaaccaccaaaatccggtagaggcggtgcgtggatatcagat  11774300                                                                 <------NtERF2                                                                ------>NtERF2                                                                ----------->RAV1(1)                                                               --------->ETT(2)                                                               <---------ETT(2)                                                               --------->bZIP60(1)                                                               <---------bZIP60(1)                                                            --------->ALFIN1                                                           -------->ABF1                                                           <-------MYC2                                                           ------->MYC3                                                           ------->PIF5                                                           ------->MYC4                                                           <-------MYC4                                                           <-------MYC3                                                           <-------PIF5                                                           ------->MYC2                                                          >>>>>>>>>>AtMYC2                                                          >>>>>>>>>>ABI5               <---------TOE2(3)                                                          --------->ANAC55(2) <-------PIF5                                                          <---------ANAC55(2) ------->MYC2                                                          >>>>>>>>>>HY5       <-------MYC2                                                          --------->O2        <-------MYC3                                                          <---------O2        ------->MYC3                                                          --------->TGA1a     ------->MYC4                                                      ----------------->PIF3(1)      <XXXXXXXXXXXXXXX                                              ----------->GT1 <------NtERF2   <-------MYC4         --------->HSFC1(2)           --------->TOE1(2)   <---------bZIP60(2)<---------O2         <---------HSFC1(2)          --------->At4g35610  <---------TGA1a    --------->TGA1a         --------->HSFB2a(1)         --------->ZAT2  --------->ANAC46        --------->O2    <------NtERF2                    <---------ZAT2  --------->ANAC58        <---------TGA1a ----GLK1(2)      --------->ANAC46   <---------At4g35610 ------------>OsbHLH66------->PIF5----------- --------AGL1     <---------O2    ---------->DOF2    --------->ANAC58 --------->YAB1 <---------AHL20(2) ------>MYB59     --------->O2    ==================================bZIP_DOF <---------ANAC55(2)   taggccagcgaagcatctctacgtggcaactagatagaaagctgggaattgaaacaagacacgtggcgacattaataacacgtggaattaatgtgaccca  11774400               --------->AtLEC2          --------->ANAC58                        --------->WOX13(1)    --------->DEAR3(1)                     --------->YAB1    ----------->HVH21            --------->AHL20(2)      ----------->GT1   --------->DEAR3(2)       ------>ZmHOX2a(1)  --------->GLK1(2)*TSS                               -- XXXXXXMIR393A/B    <-------TEIL <---------AHL20(2)      --------->YAB1  <---------ZAT14     -------- >HVH21   --------->ANAC58 --------->TOE2(3)  --------->YAB1  --------->ICU4               ----------   tttggaccgacgaagccatgcatacatttccttatttaaatcgaataagaatcattcaagagtaattagttagagtttagagaaacagaaaactaaagaa  11774500                                                                                               ------                                                                                               <-----                                                                                              -------                                                                                              <------                                                                                  --------->At4g35610                                                                               --------->At4g35610                                                                               <---------At4g35610                                                                        --------->AtLEC2      <------                                       <---------------AtSPL3           --------->ANAC58  --------->HSFB2a(1)                                       <---------------AtSPL8           --------->ANAC58  <---------HSFB2a(1) ------->AHL20(2)                     <---------ANAC46                 --------->WOX13(1) --------->HSFC1(2) --->GT1                         --------->CCA1(2)                  <-----------HVH21     <---------HSFC1(2) >DOF2                    --------->CCA1(2)--------->ZAT14  ----------->GT1 ---------->DOF2   -------   aaaaaatatgcaatcggcgaaacagaagataagcgatatggctagtacagccaaggagaagatggtgatatgtcaagcaaaagctgatgagaaggttcta  11774600                                                                                         --------->ATERF1(2)                                                                                         <---------ATERF1(2)                                                                                       <-------TEIL                                                                                      --------->ALFIN1               <---------ATHB12                                                     <---------ANAC58               <---------YAB1                                                       <---------bZIP60(2)               --------->ICU4  --------->ATHB12                                     <---------ANAC55(1)         <---------YAB1     --------->YAB1                                          <---------ANAC46 --------->AGL15          <-----------GT1  <---------AHL20(2)                  --------->YAB1 ----------AGL15     <---------ANAC58      --------->AHL20(2)                <---------YAB1        -- ---------->AGL3     <---------ANAC46   ----------->GT1                      <---------AHL20(2)  <--- -----------AGL2     <---------ANAC58  <---------YAB1            <---------WOX13(1) <---------ANAC58 -----------AGL3--------->ATHB12       --------->ICU4<---------TOE2(3)      --------->TOE2(3)    <--- ---------->AGL2<---------ICU4<---------YAB1<---------AHL20(2) --------->ATHB12<---------ICU4 <------NtERF2   aatttagaattatgctaatgatttcgtttaacatcattgatatgattaaatagttatggattgtttgattgattcaaatattaatgacgtgcaggcagag  11774700                                                 --------->DAG2                     ------->MYC3                                               ---------->DOF2                      <-------MYC3                                           ------->GAMYB                            ------->MYC2           <------ZmHOX2a(1)             ------>MYB46(1)                     --------->CCA1(2)       <---------ANAC46                  ------>MYB83                        --------->GLK1(1)       <---------ANAC58                 --------->MYB52(1)                   <---------GLK1(1)       <---------ANAC58                --------->MYB46(3)                   <---------ARR14(2)    <---------DEAR3(1)                 --------->AtMYB61                    --------->ARR14(2)   --------->ATERF1(1)  ---------->DOF2--------->DEAR3(1)             --------->GLK1(2) <---------DEAR3(1)  <------ZmHOX2a(1)--------->DEAR3(2)              --------->ARR14(2)   --------->DAG2 ---->NtERF2   ---------->DOF2        --------->MYB46(3)              <---------ARR14(2)  ---------->DOF2 ------ANAC58--------->ANAC58      <---------ZAT18          <---------At4g35610     <-------MYC2 ------ANAC58--------->ANAC58      --------->ZAT18          --------->At4g35610   ------->TEIL<------   cgggcgatggcgaggacgaaagaggagaaagagatagcgcaccaacggagaaaggcgaaggaagcagaagcgaatatggatatgcacatggctaaagcgg  11774800                                                              <-------PIF4                                                              ------->PIF4                                                              ------->MYC3                                                              <-------MYC3                                                              <-------MYC2                                                              ------->MYC2                                                              ------->MYC4                                                              ------->PIF5                                                              <-------PIF5                                                              <-------MYC4                                                             <---------O2                          --                                                             --------->TGA1a                 <-------                                                             <---------TGA1a                ---------                                                             --------->PIF3(3)             --------->ANAC58                                                             <---------PIF3(3)          <---------ATERF1(1)                                                             ======================MYC_MYB --------->ANAC46                                                             --------->O2               ------>NtERF2                                                             =====================bZIP_DOF --------->ANAC58                                                           <------------OsbHLH66       <---------ARR14(2)                                                         <-----------------PIF3(1)     --------->ARR14(2)                                                        --------->PCF2             --------->DEAR3(2)                                                       --------->PCF5             ------->TEIL     <-            --------->ANAC58                      --------->YAB1                <---------ZAT14<-----            --------->ANAC58                      <---------ICU4       --------->MYB46(3) <---------LBD16    --------->LBD16                 XXXXXXXXXXXXXXXXXXXX>MIR779.1      ---------->DOF2--------->ZAT2  <---------LBD16       --------->ANAC58         <---------YAB1 ------->TEIL ----------->RAV1(2)  <-- ---RAP2.3(2)           --------->ANAC58   <-----------GT1 <---------ALFIN1------->GAMYB--------->PCF2   ctcatgcggaagacaagcttatggctaagcaatctcactaccatgttactgatcatggtccccacgtgcctcaacaagcgcctgtaccggctcccgcacc  11774900                                                                                          <---------YAB1                                                                                          --------->ICU4                                                                                        --------->YAB1               <---------ANAC55(2)                                                   <---------bZIP60(1)               <---------ANAC58                                                      --------->bZIP60(1)               <---------ANAC58                                                 <---------TGA1a            <---------MYB52(1)                                                  <---------O2        <            --------->ARR14(2)                                                  --------->O2        -            <---------ARR14(2)      <-----------GT1                             --------->TGA1a  ----           <-----------HVH21 <---------LBD16                     ------->GAMYB------>NtERF2   -------    ----------->HVH21       -------->P                           =========================MYC_MYB<--- ------->ARR14(2)           ------>MYB83                       --------->At4g35610----------->HVH21<- --ALFIN1  <-------GAMYB    --------->MYB52(1)              <---------ATHB12 ----------->HVH21<------ >LBD16------------>AtMYB77 ------>MYB46(1)                ------>MYB83      --------->DEAR3(1) <---- --------ARR14(2)          ------>ZmHOX2a(1)       ------>ZmHOX2a(1)      --------->TOE2(2)--------->YAB1 ------------AGL1   <---------KAN4(2)  --------->TOE2(3)   ------>MYB46(1)--------->TOE1(2)<---------ICU4 ---------HVH21<---------ANAC46--------->LBD16  ------>NtERF2--------->YAB1------>ZmHOX2a(1) --------   ggttatgggacacggttacgggcataatcctaccggagttacctcagtgcctcctcagacctatcatccgacttatcctccgacgggacatcataatcat  11775000  Previous    Next  AGI:  At1g32550.1    Description:  ferredoxin family protein. similar to ATFD1 (FERREDOXIN 1), 2 iron, 2 sulfur cluster binding / electron carrier/ iron-sulfur cluster binding [Arabidopsis thaliana] (TAIR:AT1G10960.1); similar to Os03g0685000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050923.1); similar to unknown [Picea sitchensis] (GB:ABK22496.1); contains InterPro domain Ferredoxin [2Fe-2S], plant; (InterPro:IPR010241); contains InterPro domain Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); contains InterPro domain Ferredoxin; (InterPro:IPR001041) Range:  from: 11771746    to: 11774167    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g32560.1    Description:  late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein. similar to late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G35300.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63437.1); contains InterPro domain Late embryogenesis abundant (LEA) group 1; (InterPro:IPR005513) Range:  from: 11774464    to: 11775259    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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