Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 ------                                                                                  ---------->DOF2                                                                               <------ZmHOX2a(2)      ------->TEIL                                                            <---------ARR11(3)    ------->GAMYB                                                             --------->AGP1   <-----   --------->MYB46(3)                                                         --------->ARR14(2)   <---------MYB52(2)                                                         <---------ARR14(2)<---- --------->MYB52(1)                                                    ------->TEIL            <----- ------NtERF2                                                          <---------ARR14(2)      <----- ------>RAP2.6(2)                                                      --------->GLK1(2)       ------ ------>ANAC58                                                      --------->MYB46(3)         ------ ------>ANAC46                                                      <---------ATHB12--------->ANAC58 ------>ANAC58     --------->ANAC58                     <-----------GT1--------->ARR14(2) --------->AHL20(2) ------------------WRI1                                --------->AHL20(2)  ------>ZmHOX2a(1)  ------- --->DOF2          --------->ANAC58              --------->YAB1   --------->MYB52(1)--------->ANAC58   gcgcaacgaacatcgaaatggaagcaagagagaaacaaaaactaagtagaatcaaaattaactatagccaacgaatcctagatccaaagccataaaatat  11773800      <---------HSFB2a(2)                                                                 ===========   ------->TEIL                                                              <---------ANAC58 --->AHL20(2)                                                                <---------ANAC58 ----AHL20(2)                                                             --------->ARR14(2) -----AHL20(2)                                                            <---------ARR14(2)     ---- ----AHL20(1)                   --------->ARR14(2)                --------->ARR14(2)      ------>ZmHOX2a(1) ----ARR11(3)                   --------->GLK1(2)                 <---------ARR14(2)<---------ALFIN1 --->ARR11(3)          <-------TEIL        <-----------GT1     <---------HSFB2a(2)  --------->AtMYB61 --->AHL20(1) --------->ZAT14   <---------ARR14(2)             --------->HSFB2a(2) --------->MYB46(3) -->AHL20(2)  <---------ZAT14  <---------CCA1(2)              <---------LBD16<---------ANAC46    <XXX   atttgaatctcgaaactacagagcatacattgcaaatctagagtataacttatccaatctaacctctggaacctcgaattcgtgaaccactcctcgttgt  11773900                                                                                      --------->ANAC46                                           <---------CCA1(2)                          --------->O2                                         ------>ZmHOX2a(1)                            --------->ANAC58                                      <------ZmHOX2a(2)                               --------->bZIP60(2)                                     <---------ARR11(3)                               --------->ANAC58                                     --------->ARR14(2)                               <---------TGA1a                                     <---------ARR14(2)                               --------->TGA1a                                     --------->ARR11(3)                               <---------O2                                    ------->GAMYB                           --------->LBD16                                   --------->MYB46(3)                      --------->HSFB2a(2)                                   <---------ATHB12                        <---------ANAC55(2)                                  ------>MYB83                             --------->ANAC55(2)                                  ------>MYB46(1)                          --------->ANAC46                                 --------->MYB52(1)                        <---------HSFB2a(2)                                --------->TOE1(2)                         <---------LBD16                                ------->GAMYB               --------->HSFB2a(1)     <---------ALFIN1                                --------->TOE2(2)           <---------HSFC1(2)   ----------->HVH21                                --------->AtMYB61           <---------HSFB2a(1)--------->GLK1(1)                               <---------MYB52(2)           --------->HSFC1(2) <---------GLK1(1)        ----------->GT1        --------->MYB46(3)       ----------->GT1 --------->GLK1(2)      <---------ZAT14          <---------MYB55(2)      --------->ALFIN1 --------->ARR14(2) ------>ZmHOX2a(2)            --------->ANAC46       <---------ANAC58   <---------ARR14(2) =======HOX2a_HOX2a           --------->ANAC58       <---------ANAC58  --------->GLK1(1) ----->ETT(2) <----------DOF2 --------->ANAC58       <---------ANAC46  <---------GLK1(1)           <- XXXXXXXXXXXXXXXXXMIR851-5P --------->MYB46(3) ----------->HVH21      <------ZmHOX2a(1)<-----------HVH21   cgatcgtgaacagtgactttgtgcgaaggaacaaccaacgatcctctatctgatggagtggaaacttctacaggaatccggaactcacacgtcgcagtcg  11774000                      --------->ARR11(3)                      --------->AHL20(1)                <---------ANAC55(2)                --------->ANAC55(2)                ----------->GT1               <-------TEIL                        ----------->RAV1(2)            <---------GLK1(1)                      <---------At4g35610            --------->GLK1(1)         ----------->GT1        --------->ANAC46--------->ARR11(3)         --------->At4g35610     ----------->HVH21<---------AHL20(1)        <<<<<<<<<TBF1    ------>ZmHOX2a(1) <---------ARR11(3)  <---------HSFB2a(1)    --------->HSFB2a(2) <---------ARR11(3)--------->HSFB2a(1)    <---------HSFB2a(2)<---------CCA1(2)  --------->HSFC1(2)                 ----------->GT1 --------At4g35610    <---------AHL20(2)  <---------HSFC1(2)                --------->ANAC46   tagctcctcgacggaaattcgtaatatatctccgattaatcggaaaattcttcttctgaagcgaagtacaaaatgtacagggcaaaatcagagccatagt  11774100                                                                                    --------->AtMYB61                                                                                   <---------ATHB12                                                                                  -------->P                      <----------DOF2                                            <-----------GT1                    <------NtERF2                                                --------->WOX13(1)                  <---------RAP2.6(2)                                          <---------ATHB12                 <---------LBD16                                               --------->MYB46(3)         <---------YAB1                                                       ------>MYB46(1)     --------->ARR11(3)                                                       ------>MYB83     <---------ARR14(2)                                                      --------->WOX13(1)     -     --------->ARR14(2)  <-----------GT1                            ---------->DOF2--------->MYB46(3)    <------ZmHOX2a(1)<---------ANAC46            --------->CCA1(2) *TSS    ------------>CBF        <-   tttggaggattttgattttcgcggcttttactagtcgagaggttgaagaagataagagagtgtttctgagaaaagagaccaatcaaccattccactgcta  11774200                                                                                   <---------ANAC58                                                                                  --------->MYB55(2)                                                                                  <---------MYB46(3)                                                                                  <-------TEIL                                                                                 --------->ALFIN1                                                                                --------->ATERF1(1)                                                                                <------NtERF2                                                                               <---------ORA47(2)                                                                               <---------DEAR3(2)                                                                              --------->ALFIN1                                                                    <---------LBD16<---------ANAC46                                                                  --------->GLK1(2)<---------ANAC58                                                          --------->MYB46(3)  <---------DREB2C(2)                                                        <-----------GT1       <---------DEAR3(1)                                                      --------->AHL20(2)     <---------ABI4(1)           --------->GLK1(1)           <-----------------AGL1     --------->ARR14(2)           <-----        --------->LBD16        <---------LBD16       <---------ATHB12  <---------MYB52(1)  <---------      <---------LBD16      <---------DAG2          --------->WOX13(1) --------->LBD16    <---------GLK1(1) -------->YAB1             <----------DOF2       ------------>CBF <---------ARR14(2)     --------->GLK1(1) --------ATHB12  --------->ANAC46--------->LBD16------>NtERF2 --------->AtMYB61<---------DEAR4(2) ---   aatcataaaccggaaatacaaaccaaaaacttttccggtttacaaaattcggccaattaaaccaccaaaatccggtagaggcggtgcgtggatatcagat  11774300                                                                 <------NtERF2                                                                ------>NtERF2                                                                ----------->RAV1(1)                                                               --------->bZIP60(1)                                                               --------->ETT(2)                                                               <---------bZIP60(1)                                                               <---------ETT(2)                                                            --------->ALFIN1                                                           ------->MYC4                                                           -------->ABF1                                                           <-------MYC3                                                           <-------MYC2                                                           ------->PIF5                                                           ------->MYC3                                                           ------->MYC2                                                           <-------MYC4                                                           <-------PIF5                                                          --------->TGA1a                                                          <---------O2                 <---------TOE2(3)                                                          <---------bZIP60(2) ------->MYC4                                                          >>>>>>>>>>HY5       <-------MYC3                                                          >>>>>>>>>>ABI5      ------->MYC2                                                          --------->ANAC55(2) <-------MYC2                                                          <---------TGA1a     ------->MYC3                                                          >>>>>>>>>>AtMYC2    <-------PIF5                                                      ----------------->PIF3(1)      <XXXXXXXXXXXXXXX                                              ----------->GT1 <------NtERF2   ------->PIF5         <---------HSFC1(2)           --------->TOE1(2)   <---------ANAC55(2)<---------ANAC55(2)         --------->HSFC1(2)          <---------ZAT2  --------->ANAC46        <---------O2         --------->HSFB2a(1)         --------->At4g35610  --------->O2       --------->TGA1a    <------NtERF2                    <---------At4g35610 ------------>OsbHLH66<-------MYC4 ----GLK1(2)      --------->O2       --------->ZAT2  --------->ANAC58        <---------TGA1a --------AGL1     --------->ANAC46==================================bZIP_DOF --------->O2 ----------- ------>MYB59     <---------O2    ---------->DOF2    --------->ANAC58 --------->YAB1 <---------AHL20(2)   taggccagcgaagcatctctacgtggcaactagatagaaagctgggaattgaaacaagacacgtggcgacattaataacacgtggaattaatgtgaccca  11774400               --------->AtLEC2          --------->ANAC58                        --------->WOX13(1)    --------->DEAR3(1)                     --------->YAB1    ----------->HVH21            --------->AHL20(2)      --------->YAB1   --------->DEAR3(2)       ------>ZmHOX2a(1)  --------->GLK1(2)*TSS                               -- XXXXXXMIR393A/B    <-------TEIL <---------AHL20(2)      ----------->GT1 <---------ZAT14     -------- >HVH21   --------->ANAC58 --------->TOE2(3)  --------->YAB1  --------->ICU4               ----------   tttggaccgacgaagccatgcatacatttccttatttaaatcgaataagaatcattcaagagtaattagttagagtttagagaaacagaaaactaaagaa  11774500                                                                                               ------                                                                                               <-----                                                                                              -------                                                                                              <------                                                                                  --------->At4g35610                                                                               <---------At4g35610                                                                               --------->At4g35610                                                                        --------->ANAC58      <------                                       <---------------AtSPL8           --------->AtLEC2  --------->HSFC1(2)                                       <---------------AtSPL3           --------->ANAC58  --------->HSFB2a(1) ------->AHL20(2)                     <---------ANAC46                 --------->WOX13(1) <---------HSFC1(2) --->GT1                         --------->CCA1(2)                  <-----------HVH21     <---------HSFB2a(1) >DOF2                    --------->CCA1(2)--------->ZAT14  ----------->GT1 ---------->DOF2   -------   aaaaaatatgcaatcggcgaaacagaagataagcgatatggctagtacagccaaggagaagatggtgatatgtcaagcaaaagctgatgagaaggttcta  11774600                                                                                         --------->ATERF1(2)                                                                                         <---------ATERF1(2)                                                                                       <-------TEIL                                                                                      --------->ALFIN1               <---------ATHB12                                                     <---------ANAC55(1)               <---------YAB1                                                       <---------ANAC46               --------->ICU4  --------->ATHB12                                     <---------bZIP60(2)         <---------YAB1     --------->YAB1                                          <---------ANAC58 --------->AGL15          <-----------GT1  <---------AHL20(2)                  --------->YAB1 ----------AGL15     <---------ANAC46      --------->AHL20(2)                <---------YAB1        -- ---------->AGL2     <---------ANAC58   ----------->GT1                      <---------AHL20(2)  <--- -----------AGL3     <---------ANAC58  <---------YAB1            <---------WOX13(1) <---------ANAC58 -----------AGL2--------->ATHB12       --------->ICU4<---------TOE2(3)      --------->TOE2(3)    <--- ---------->AGL3<---------ICU4<---------YAB1<---------AHL20(2) --------->ATHB12<---------ICU4 <------NtERF2   aatttagaattatgctaatgatttcgtttaacatcattgatatgattaaatagttatggattgtttgattgattcaaatattaatgacgtgcaggcagag  11774700  Previous    Next  AGI:  At1g32550.1    Description:  ferredoxin family protein. similar to ATFD1 (FERREDOXIN 1), 2 iron, 2 sulfur cluster binding / electron carrier/ iron-sulfur cluster binding [Arabidopsis thaliana] (TAIR:AT1G10960.1); similar to Os03g0685000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050923.1); similar to unknown [Picea sitchensis] (GB:ABK22496.1); contains InterPro domain Ferredoxin [2Fe-2S], plant; (InterPro:IPR010241); contains InterPro domain Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); contains InterPro domain Ferredoxin; (InterPro:IPR001041) Range:  from: 11771746    to: 11774167    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g32560.1    Description:  late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein. similar to late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G35300.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63437.1); contains InterPro domain Late embryogenesis abundant (LEA) group 1; (InterPro:IPR005513) Range:  from: 11774464    to: 11775259    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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