Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           --------->GLK1(1)                                                                                     <------------MYB.PH3(1)                                                                                     --------->ANAC55(2)                                                                                     <---------ANAC55(2)                                                                                     --------->ANAC58                                                                                     --------->ANAC58                                                                                    >>>>>>>>>MYB98                         --------->RVE1(1)                                <---------ARR14(2)                        --------->GLK1(2)                                 --------->ARR14(2)                        <---------ARR11(3)                                <---------GLK1(2)                        --------->ARR11(3)   --------->ZAT14             <------ZmHOX2a(1)                   --------->At4g35610       <---------ZAT14         ------>ZmHOX2a(1)------->GAMYB ---YAB1           <---------At4g35610    ------>ZmHOX2a(1)   <---------GLK1(2)    --------->MYB52(1)   tacaaaaactccaaatgtttcagcaaaatctcttccaaatgctcctctgtacaatatgcccaaaaattctcctcaggattctcagtaacggaattcaaat  11762200                                                                                                  ---                                                                                                  ===                                                                                                 <---                                                                                         --------->MYB55(2)                                                                                         <---------MYB46(3)                                                                                        --------->ALFIN1                                                                                   --------->MYB52(1)                                                                                --------->YAB1  <----                                                                              ------>MYB83      -----                                                                              ----------->RAV1(1)====                                                                              ------>MYB46(1)   <----                                                                            --------->MYB46(3)  <----                                     <---------GLK1(2)                      <---------MYB59  --------       --------->LBD16     --------->YAB1          <---------ANAC58         <---------MYB55(2) <-----     <---------LBD16      <---------YAB1           <---------ANAC58        --------->ANAC46<---------   <---------ARR14(2)   <------ZmHOX2a(1)         --------->ATHB12     --------->HSFB2a(2)<------MYB46(1)   --------->ARR14(2)<-----------RAV1(2)     --------->MYB46(3)        <---------HSFB2a(2)<------MYB83   tgacagaaccggaatcagtaagaccaggatgataaacaaggttctcaacaattgattgtgacatagcaatcttctcgacccaacataacggtgggtcgga  11762300                                    <-------PIF5                                    <-------PIF4                                    ------->PIF5                                    <-------MYC4                                    ------->MYC2                                    <-------MYC2                                    ------->PIF4                                   <---------ANAC55(2)                                   <---------TGA1a                                   --------->TGA1a                                   --------->ANAC55(2)                                   <---------ANAC58                               <-----------HVH21                               <-----------------PIF3(1)                            <---------DEAR3(2)                            <---------MYB46(3)       <---------At4g35610  <------MYB83       --------->At4g35610  <------MYB46(1) --->ZmHOX2a(2)           <--------P<-------MYC3 ==========================HOX2a_HOX2a ---ZmHOX2a(2)            ===================MYC_MYB                 --------->ARR14(2) -------ARR10        <---------LBD16------->MYC3                     --------->GLK1(2) ---->ARR14(2)      ------>ZmHOX2a(1)  <---------ANAC58       --------->ANAC58 ==========================HOX2a_HOX2a <---------ANAC58       --------->ANAC58 -----ARR14(2)     <---------SPL7<-----------GT1         --------->ANAC46 -----AGP1         --------->TOE1(2)------->MYC4  --------->ZAT6     <---------ARR11(3) ->ETT(1)         ------>ZmHOX2a(2)<---------ANAC58      --------->ANAC58 ----CCA1(2)=================================bZIP_DOF    --------->ANAC58       ---------->DOF2 --HVH21    <----------DOF2<---------DEAR3(1)  ----------->HVH21----------------->AGL1    -----------   tctaaatgcagcggctttgatcctacgggtcggtttcacgtgcttctccctcacagtacaacccatgccaaaatctgaaactgaaagagagattgaaaaa  11762400                                                                               -------->HAHB4                                                                               <---------ICU4                                                                            --------->YAB1                                                                            <---------ICU4                              ------->GAMYB                                <---------ATHB51                             --------->MYB46(3)                            <---------AHL20(2)                            ------>MYB83                               --------->AHL20(2)                            ------>MYB46(1)                     --------->ATHB12                            -------->P                          <---------AHL20(2)                           --------->MYB55(1)                  <---------AHL20(1)                          <---------MYB46(2)                   --------->AHL20(1)                          --------->MYB46(3)                   --------->AHL20(2)      --------->YAB1                          <---------MYB111(1)                  <---------AHL20(2)     <---------YAB1                          <---------MYB111(2)               --------->AHL20(2) --------->ATHB12         --------->YAB1<-----------GT1                      <---------AHL20(2) <--------ATHB1      ----------->GT1<---------DAG2                        <---------AHL20(2) <---------YAB1        < >GT1----------->GT1 <----------DOF2  --------->TOE2(2)    --------->AHL20(2) --------->ICU4        =   cagagagacgataaaaatgaaaactttaccaaccaaaaaacatgggtttgaagaaatggaattaatttattgaataaataatgattcgatgatagagacg  11762500                                <---------At4g35610                                --------->At4g35610                                <------NtERF2                               <---------MYB46(3)                           --------->ALFIN1                           <---------DEAR3(1)                           <---------AtMYB61                         --------->MYB55(2)                         <---------MYB46(3)                        <---------AtMYB61                        --------->ALFIN1                        <---------DEAR3(1)                     <---------DEAR3(1)          <---------ARR11(3)  <---------RAP2.6(2)                                      *TSS          --------->ARR11(3)<---------MYB46(3)                             --------->DAG2 ------ZmHOX2a(1)    ------>ZmHOX2a(2)                                   ---------->DOF2 ===========================HOX2a_HOX2a    <---------LBD16         <---------ANAC46  <xxxxxxxxxxxxxxx   gaggaatacgaagaacttactgatcggtggtggtggctgaattttctcggctaagagaagatgagagtttcggcgaaaaggttatgcgagagagagagag  11762600                                                 --------->AHL20(1)                                        <------NtERF2                                        --------->ATERF1(1)                                       ------>NtERF2                                       ----------->RAV1(1)                                      --------->RAP2.3(3)                                      <---------DEAR3(1)                                      --------->DEAR3(1)                                      --------->RAP2.3(2)                                     --------->RAP2.6(1)                                     --------->ERF1                                     --------->RRTF1(1)                                     --------->DEAR4(2)                                     --------->ATERF1(1)                                     <------NtERF2                                     --------->ORA47(2)                                    <---------ORA47(2)                                    <---------RAP2.3(1)                                    <---------RAP2.6(1)                                    <---------ERF1<---------AHL20(2)                                    <---------RRTF1(1)                                    <---------ATERF1(1)                                    ------>NtERF2<---------AHL20(2)                                    <---------DEAR4(2)                                   <---------RAP2.3(2)                                   --------->ATERF1(2)                                   <---------RRTF1(3)                                   <---------RRTF1(2)                                   <---------DREB2C(2)                                   <---------RAP2.3(3)                                   <---------ATERF1(2)                                   <---------DEAR3(1)                                <-----------RAV1(1)                             --------->ARR14(2)  --------->AHL20(2)              <---------ZAT14                             <---------ARR14(2)  <---------ARR11(3)       <---------ANAC58          -                          <---------------AGL15  --------->ARR11(3)       --------->ANAC55(2)       <                         <-----------------AGL2  <---------AHL20(1)       <---------ANAC55(2)      --         <----------DOF2 <-----------------AGL3--------->GLK1(2)          <---------ANAC58   -------- xsmallRNA(s)      <---------MYB52(1)--------->RAP2.3(1)     <----------DOF2 <---------WRKY18(1)  <--   agagagagaaactttgtttcggtttcttccatttctggcggcgccagagaatatatttatgggctttgagcccattacttgactgaacttatttgggccc  11762700                                                               <------MYB46(1)              --------->MYB46(3)                     ------>ZmHOX2a(2) <---------ARR14(2)                                 <------ZmHOX2a(2) --------->ARR14(2)                                <---------ARR14(2) -------->GLK1(1)            --------->YAB1        --------->ARR14(2)  <---------MYB52(1) ---------GLK1(1)           <---------YAB1    <---------ARR14(2)      <-------GAMYB                 < ------->ARR14(2)        --------->AHL20(2)   --------->ARR14(2)    <---------ANAC46                < ->PCF2       --------->DEAR3(2)        ----------->GT1        <------MYB83                 <-------- -------CCA1(2)----------->HVH21       ----------->GT1  <---------MYB52(1)       ----------->GT1   --   atatatccgaattcaaaccgacagcgttttattataggtatgggttaaaatccgatctgtttgtttggtttcggttatatagaatgtgaaaacagattag  11762800                                                                          --------->ATHB12                                                                         <---------YAB1                                                                         --------->ICU4                                                                        <---------TOE2(3)                                                                      <---------AHL20(2)                                                                     <---------AHL20(1)     <--------                                                                <---------AHL20(2)          ---------                                                                --------->AHL20(2)       --------->AHL20(1)                     <---------YAB1       --------->MYB59   --------->AHL20(2)        --------->AHL20(2)               <---------TOE1(3)<------MYB83<------ZmHOX2a(1)<---------AHL20(2)       --------->YAB1 ------MYB46(1)<---------TOE2(3)<------MYB46(1)      <---------DAG2  --------->AHL20(2)  <---------AHL20(1) ------MYB83<---------YAB1     <---------AtMYB61     <----------DOF2 --------->AHL20(1)  <---------AHL20(2) -GLK1(2)<---------YAB1        --------->MYB59    <-----------GT1    <---------AHL20(2)  --------->AHL20(2) ------->MYB59 <---------YAB1<---------MYB52(1)  --------->AHL20(2) --------->YAB1 --------->YAB1  --   tttggttcagtttgattatggttttgattcggtttggttttagttaggaaattaactttatattatataaatataatgtttgaactaataatattttaat  11762900                                                 --------->AHL20(1)                                      <-------TEIL                                  <---------------AtSPL8 --------->TOE2(3)                               <---------AHL20(2)<---------AHL20(1)                               --------->AHL20(2)<---------AHL20(2)                              --------->AHL20(2)--------->AHL20(2)                          --------->AHL20(1)   <---------YAB1                          <---------AHL20(2) --------->YAB1 -AHL20(2)                <---------AHL20(1)<---------YAB1                              --------->TOE2(3) >AHL20(2)                --------->AHL20(2)--------->ICU4                  <------ZmHOX2a(2) --------->GT1         --------->YAB1 ------->TEIL<---------YAB1   --------->ZAT14----------->GT1   atagttatactaacatctattgtattaataaattaaaatgtacattatgattatatttatctcaattagtttagtccgatcgactggttacattaaactc  11763000                                                                               <------MYB46(1)                                                                               <------MYB83                                                                              --------->MYB59               <----------DOF2          --------->ANAC58                    <---------MYB52(1)         <---------YAB1                 --------->ANAC58            --------->AHL20(2)     <---------GLK1(2)          ----------->GT1                     <---------AHL20(2)           ----   ggtttcaaattcttattctttttataaaaccaattggttaagaagcaaattttgtttttggtataaacatttatttcagtttggtttacagttttgtgat  11763100  Previous    Next  AGI:  At1g32530.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to zinc finger (C3HC4-type RING finger) protein-related [Arabidopsis thaliana] (TAIR:AT2G35330.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63430.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 11759439    to: 11762587    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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