Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100            <---------MYB52(1)             <---------ANAC58                      <---------TOE2(3)         <-----------HVH21               <---------ANAC46                     ---------->DOF2        --------->ANAC46                 <---------ANAC58              <------ZmHOX2a(2)     <---------ARR14(2)                 <---------ZAT2                <---------ARR11(3)    --------->GLK1(1)                   --------->ZAT2                <---------ARR14(2)    <---------GLK1(1)                <-------GAMYB                    --------->ARR11(3) ---->ZAT18                   --------->LBD16                         --------->ARR14(2) -----ZAT14   <---------GLK1(2)     <---------ANAC58                ----------->ARR10 ------->TEIL -- ---->ZAT14  <---------At4g35610    <---------ANAC58  <---------MYB46(3)------>ZmHOX2a(2) --------->At5g28300   aactgggtttccgtcagattatccaaaatttccgaatttcgttgctgggtcgaaattggttcgatttgagaagatcggattaaagatgtatcggtgaatc  11751700                                                              <---------ARR14(2)                    ------>NtERF2                          --------->ANAC58                   <---------RAP2.6(2)                     <---------ANAC55(2)                   <---------ANAC46                        --------->ANAC58              <---------ANAC58 ----------->GT1             --------->ANAC55(2)              <---------ANAC58<------NtERF2    <---------At4g35610          <----------DOF2   <---------ANAC58   <---------LBD16--------->ARR14(2)               <-----     <-------TEIL --------->RAP2.6(3)          --------->At4g35610                             ------  <---------HSFB2a(1)       <---------ANAC58 ---------->CDC5  <---------GLK1(2)                ------  --------->HSFB2a(1)       <---------ANAC46 <-----------RAV1(2)  <----------DOF2   >>>>>>>>>TBF1 --------->DAG2 ----------->HVH21       <---------GLK1(2) <---------LBD16 ----------->GT1 <------ZmHOX2a(1) -------->DOF2--------->ANAC55(2)   ---------->DOF2      --------->MYB52(1)  ---------->DOF2  -------   ggaaaggttcgtcttttcgtgacggccatggcgtagataaaagagtctcagcggaagaatcacggattctttgaagaggtaaagaagaagaaggagaagc  11751800                      <---------At4g35610       --------->HSFC1(2)       <---------HSFC1(2)       <---------HSFB2a(1)       --------->HSFB2a(1)      --------->ARR11(3)      --------->GLK1(2)                                         --------->ANAC58      --------->ARR14(2)                                        --------->ANAC58      <-----------ARR10                                      --------->ZAT14      <---------ARR14(2)                                     <---------ZAT18      <---------ARR11(3)                                     --------->ZAT18     <---------GLK1(2)--------->At4g35610               <---------ANAC58     <---------ARR14(1)                                 <---------ANAC58 ----At4g35610     <-------TEIL                        --------->HSFC1(2) --->At4g35610    --------->GLK1(2)       <-----------HVH21  <---------ZAT14                     <--- --->ZAT2   --------->HSFB2a(2)        --------->DAG2  <---------HSFC1(2)       <---------HSFB2a(2) -->GLK1(2) <---------HSFB2a(2)      ---------->DOF2  ------->TEIL              --------->HSFB2a(2)   tgagagagaatcttcgagagattcagctaattgaagtacaaaagggtcagagaacgaagcttgtgcacgaacagaaacacttgtggaagttgttcttctg  11751900                                                                    --------------->AGL15                                                                   <------NtERF2                                                                   ----------------->AGL2                                                                   ----------------->AGL3                                                                   <-----------------AGL3                                                                  <---------RAP2.6(3)                                                                  ------>NtERF2                                                                 --------->ANAC46                                                                 --------->RRTF1(3)                                                                 --------->ANAC58                                                                 ------->GAMYB                                                                 --------->ANAC58                                                                 --------->RRTF1(2)                                                                 --------->DREB2C(2)                                                                 <---------ATERF1(2)                                                                 --------->DEAR3(1)                                                                 --------->ATERF1(2)                                                                 --------->RAP2.6(2)                                                                 --------->RAP2.3(3)                                                                 --------->RAP2.3(2)                                                                --------->ERF1                                                                --------->RAP2.3(1)                                                                --------->MYB46(3)                                                                --------->RRTF1(1)                                                                --------->ATERF1(1)                                                               <---------At4g35610                                                               <---------ATERF1(1)                              <------MYB83                     <---------ZAT2                              <------MYB46(1)                  --------->At4g35610                             --------->MYB59                   --------->ATERF1(1)                          --------->ARR11(1)                   <------NtERF2                       <---------WOX13(1)    ----------->HVH21 --------->ZAT2                    <---------YAB1     --------->YAB1        --------->ATERF1(1) ------MYB52(1)   <---------At4g35610 <---------ZAT6    <-----------RAV1(1)                      <---   ttagatttcaattttggtttagatgatagatttggtatcagtgataagcgaccgagaactgtggcagccgccattaatggattccttccttctctctctc  11752000          <------NtERF2          ------>NtERF2          --------->LBD16         --------->DEAR3(1)        <---------LBD16                                                                       -------       <---------RAP2.3(1)                                      <------------------------ANAC81 <----  <----------DOF2                                    <---------ANAC58                         -------  <---------DAG2           <----------DOF2           <---------ANAC58                         <------ <---------ANAC58     --------->ANAC58             <-----------GT1  <----------DOF2   *TSS    <------ <---------ANAC58     --------->ANAC58 <---------ANAC58  ---------->ID1             <---------ANAC58 -------DOF2      --------->ANAC46     <---------ANAC58  <---------CCA1(2)          <---------ANAC58   tttgcttttcgccgcgattcccacaagtactttctcaaatagagtgtgttttttttcttgtctctcttctcttttttttttgttttccgtctctatttta  11752100                                                                                           <---------                                                                                     <-----------GT1         <-----------RAV1(1)                                                        <---------YAB1         --------->ICU4                                                           <---------ICU4 -->AHL20(2)                                                                     --------->ICU4 --------CBF                               <---------WOX13(1)                    <---------YAB1 -->AHL20(1)                             --------->YAB1                       --------->ICU4 ---AHL20(2)                            <---------YAB1          --------->DEAR3(2)--------->YAB1  --- ---AHL20(1)                       <----------DOF2            <------ZmHOX2a(1)<---------ICU4     <--   ttgtatttgtaatgttgtttagtttgggctaaatgggcttctatgatagactcattttaacttaggaccggccttaatacattattattactcaattgtt  11752200                                                                                                    <                                                                                                  xxx                                                                                              xxxxxxx                                                                                          xxxxxxxxxxx                                                                                          xxxxxxxxxxx      --------->GLK1(2)                                                                   xxxxxxxxxxx   --------->ANAC58                                                                     <xxxxxxxxxxxx   --------->ANAC58                                                                    <xxxxxxxxxxxxx ---------->DOF2                                                               <---------DAG2<------- --------AG  ---------->DOF2      --------->DAG2                     <---------ANAC58 <xxxxxxxxxxxxxx ------>HSFB2a(2)                ---------->DOF2                     <---------ANAC58 <xxxxxxxxxxxxxx -------HSFB2a(2)    ---------->DOF2                         --------->At5g28300    <-----------GT1 <   ttggaaagaaactgtgaaagtgtgaaagttagcaaaaaagtgtgaaccatttagttaagtctcggtaatttgcgaggcataccttttgaccatgttttat  11752300                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                  xxxxxxxxxxxxxxxxxxx           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                 <---------At4g35610      <---------WOX13(1)                                                        --------->At4g35610     --------->ARR14(2)                                                         <---------ZAT2     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                <---------At4g35610  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                    --------->At4g35610  --------->LBD16   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <---------LBD16   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) -----------------AGL1                                       ------>ZmHOX2a(1)  --------->ZAT2 xxxxxxxxxxxxx>smallRNA(i)                                   <----------DOF2  --------->REM1(1) xxxxxxxxx>smallRNA(i)                                     ------>ZmHOX2a(2)  <-----------RAV1(2) xxxxxxxxxxxx>smallRNA(fl3)                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxx>smallRNA(se3)                                <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxx>smallRNA(si3)                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     - xxxxxxxxxxxsmallRNA(fl3)                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <---- xxxxxxxxxxsmallRNA(i2)                                 xxxxxxxxxxxxxxxx>smallRNA(i)            <---- --AHL20(2)---------->DOF2                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      ----------- xxxxxxxxxsmallRNA(si3)        --------->ANAC55(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <xxxxxxxxxx xxxxxxxxxsmallRNA(le3)      <-----------GT1  <---------At4g35610       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ---------LBD16  ---------->DOF2              --------->At4g35610xxxxxxxxxxxxxxxx>smallRNA(i)   <xxxx   tttcagggattggcaaagtgaaagatggttttcacgttttgtctatttagctaaaatttgatccttttgcccttgctgctacagctgaaaaactgttaaa  11752400                                                                                       ----------->GT1                                                                                   <---------SPL7                                                                                   <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                   xxxxxxxxxxxxxxxxxx                                                                                   <---------ZAT14                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                  <----------DOF2                                                                                --------->At4g35610                                                                               <xxxxxxxxxxxxxxxxxxxxx                                                                               <xxxxxxxxxxxxxxxxsmallRNA(s)         <---------MYB52(1)                                                   xxxxxxxxxxxxxxxxxxxxxxx        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                  <---------DEAR3(1)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                   <---------RAP2.3(2)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                   <---------RAP2.6(2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    xxxxxxxxxxxxxxxx>smallRNA(i)                                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   xxxxxxxxxxxxxxxx>smallRNA(i)                                             --------->ALFIN1   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                             <-----------HVH21  <---------ZAT6  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                             <---------LBD16<---------At4g35610  xxxxxxxxxxxxxxxx>smallRNA(i)                       <---------RVE1(1)    <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)               <---------CCA1(1)    <---------ANAC58 xxxx>smallRNA(i2)                                  <---------ARR14(2)    <---------ANAC58 ------>TEIL                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -----------AtSPL8           <-------TEIL<xxxxxxxxxxxxxxxxsmallRNA(s)    xxxxxxxxxxxxxxxx>smallRNA(i) -----------AtSPL3       --------->MYB59 xxxxxxxxxxxxxxxx>smallRNA(i)--------->ALFIN1<---------ZAT14< >GT1 xxxxxxxxxxxxxxxx>smallRNA(i)     --------->LBD16           <---------At5g28300 --------->ZAT14- xxxxxxxxxxxxsmallRNA(se3)  --------->CCA1(2)       --------->ARR11(3)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <---------LBD16<---------ARR11(3)   <------ZmHOX2a(1)        ---   tgtacggtttagttagtcaggtttagttagatacactgttccggtttagttgaagatatttttgtttcacggtgaggagtgcggctgtacagttagaagg  11752500                                                         <---------O2                                                         <---------ANAC58                                                         --------->TGA1a                                                    <xxxxxxxxxxxxxxxxsmallRNA(i)                                                   <xxxxxxxxxxxxxxxxsmallRNA(i)                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                               ---------->DOF2                                            xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                    <---------AHL20(2)   --------->ANAC55(2)                                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                   --------->AHL20(2)    --------->ANAC46                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)             <---------AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)--------->DAG2            --------->AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)           <---------YAB1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                          <--------HAHB4        <---------AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                      <---------ARR11(3)        <---------YAB1    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         --------->ATHB51 --------->ATHB12   <---------AHL20(2)     --------->bZIP60(1)  ====================bZIP_DOF     <xxxxxxxxxxxxxxxxxxxx <---------CCA1(1)        <---------bZIP60(1) <xxxxxxxxxxxxxxxxsmallRNA(i) <---------ICU4--------->YAB1 <---------RVE1(1)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          <--------HAHB4   <---------ICU4 xxxx>smallRNA(si3)    ----------->HVH21<xxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------AHL20(2) <------ xsmallRNA(se3)        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)             <---------YAB1   --------->ICU4 xxsmallRNA(fl3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)           --------->ICU4 <---------ICU4 >smallRNA(si3)        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ----------->HVH21  --------->AtLEC2------- ---------ARR11(3)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)<---------ANAC58 <---------YAB1<---------YAB1 -------->ARR11(3)    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) <---------TGA1a<---------ICU4--------->YAB1 -------->ARR10       <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->O2--------->YAB1<xxxxxxxxxxxxxxxxx   gagatttttttttattaaaaatgaagtgacatcaacatttaatggcccaaaaagtttagacgtgactcttgtcataattaatgcaaaatcatcattacat  11752600  Previous    Next  AGI:  At1g32500.1    Description:  ATNAP6 (NON-INTRINSIC ABC PROTEIN 6); protein binding. Identical to Protein NAP6, chloroplast precursor (NAP6) [Arabidopsis Thaliana] (GB:Q9LQK7;GB:Q8LCI4); similar to ATABC1 (ARABIDOPSIS THALIANA NUCLEOSOME ASSEMBLY PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT4G04770.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63426.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN69419.1); contains InterPro domain SUF system FeS cluster assembly, SufBD; (InterPro:IPR000825) Range:  from: 11749803    to: 11752086    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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