Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      <xxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                   --------->ANAC58--                                                                                   --------->ANAC58<-                                                                                  <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                                  <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                 <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                 <xxxxxxxxxxxxxxxxxxx                                                                                 <xxxxxxxxxxxxxxxxxxx                                                                                 <xxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                                <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                                <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                                --------->ZAT2    xxx                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                               <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                               xxxxxxxxxxxxxxxx>smallRNA(s)                                                                               <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                              <---------ICU4      xxx                                                                              xxxxxxxxxxxxxxxxxxxxxxx                                                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                             xxxxxxxxxxxxxxxx>smallRNA(i)                                                                             <xxxxxxxxxxxxxxxsmallRNA(le3)                                                                             <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                            <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                            xxxxxxxxxxxxxxxx>smallRNA(i)                                                                            <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                           xxxxxxxxxxxxxxxx>smallRNA(i)                                                                           --------->WOX13(1)  xxxxxx                                                                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                          xxxxxxxxxxxxxxxx>smallRNA(s)                                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                          xxxxxxxxxxxxxxxx>smallRNA(i)                                                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)             ------>ZmHOX2a(2)                                         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)            <------ZmHOX2a(2)                                          --------->ANAC58 xxxxxxxxxxxxx           --------->ARR14(2)                                          --------->ANAC58 xxxxxxxxxxxxx           <---------ARR14(2)                                          xxxxxxxxxxxxxxxx>smallRNA(i)xx           <---------ARR11(3)                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           --------->ARR11(3)                                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           <-----------ARR10                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           <---------AGP1                            <-----------GT1  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          <------ZmHOX2a(1)                     <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxsmallRNA(i)    <----------DOF2                             --------->ICU4        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------ARR11(3)                             --------->AHL20(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --------->ARR11(3) ----------->GT1           <----------DOF2  <----------DOF2<xxxxxxxxxxxxxxxxsmallRNA(s) ->O2   <---------TOE2(3)                   --------->ZAT18   <---------ANAC58<xxxxxxxxxxxxxxxxxxxxxx ->TGA1a<---------TOE1(3)                   <---------ZAT18   <---------ANAC58--------->YAB1 <xxxxxxx   ggagaactttaaggatctaatctagtatataagaagcatgagttagtgcattaattaacaattggcttttagcaagacaatcagcacggacattgtttaa  11740700                xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)             ---------->DOF2       ---------->DOF2 xxxxxxxsmallRNA(le3) xxxxxxxsmallRNA(fl3) xxxxxxxsmallRNA(se3) xxxxxxxsmallRNA(si3) ----->MYC3  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ------MYC3--------->ARR11(3) xxxxsmallRNA(i2) xxxxsmallRNA(fl3)           --------->ANAC58 xxxxsmallRNA(le3)         ---------->DOF2 xxxxsmallRNA(se3)  xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xx>smallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxsmallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                        --------->HSFC1(2) xxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                    <---------HSFC1(2) x>smallRNA(le3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                xxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                          <-----------HVH21 >smallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                      <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxxx>smallRNA(le3)                <---------AHL20(2)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxx>smallRNA(se3)  <------ZmHOX2a(1)    <---------AHL20(2)     --------->DAG2<xxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxx>smallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)        ---------->DOF2--------->At4g35610 xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    ---------->DOF2        --------->At4g35610--------->YAB1  xxx xsmallRNA(le3)----------->GT1       <----------DOF2      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  ---- xxxxxxxxxxxxxxxxsmallRNA(i2)--------->ANAC58  --------->AHL20(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   acgtggaataaaagataaagaaaaacgaggaaagctagactttaaagaataaaattttctaactcagaagaaaaagcgggtcactcatcagaagtgtcca  11740800                                                  --------->AHL20(1)                                              <---------ARR11(3)                                          <---------ANAC55(2)                                          --------->ANAC55(2)                ------------>CBF        <-----------GT1                            ------------>CBF         <---------At4g35610        --------->AHL20(2)                        ---------->DOF2    <---     <-----------HVH21              <---------ARR11(3)                <-----------GT1            ---- xxxxxxx>smallRNA(si3)              --------->AHL20(1)   --------->ZAT6  <----------DOF2       <----- xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <---------AHL20(1) <---------AHL20(2)<---------DAG2        ------ ------>DOF2   --------->AtLEC2    ----------->TBP<---------AHL20(1) <-----------GT1    <-----------HVH21   aaagctgtgtcaactccttgcaatctgtctcaaaactatatattacatgatatatattaaaactagttgttttaacttttcaaagagcaatgtcatggat  11740900                                                                     --------->LBD16                                                                    --------->ALFIN1                                                                    <---------ANAC58                                                                    <---------ANAC46                                                                    <---------ANAC58                                                                <-----------RAV1(2)                --                                                      --------->AtLEC2                             --                                                      --------->ANAC58                           ----     --------->ICU4                                   --------->ANAC46<------NtERF2        <---------ARR11(3) ------DEAR3(1)           --------->YAB1              --------->ANAC58--------->ATERF1(1)  <--------- -->ZmHOX2a(2)            <---------ICU4             <---------LBD16<---------DEAR3(1)     --------->ARR11(3) ----ARR14(2)            --------->MYB46(3)    --------->At4g35610 --------->ATERF1(1)------------>CBF --->ARR14(2)  --------->GLK1(1)       --------->ANAC55(2)  <------------CBF          <---------ATHB12   cggcgtaatgttttgtgatttcttacaaccattactgattcaagtgatcatcttccacgcaaaattgcaggcgggggatgtctcacaaatcaatatctct  11741000                                                         <---------ARR14(2)                                                         --------->ARR14(2)                                                    ----------->RAV1(1)                                                  --------->LBD16                                                 <---------ANAC55(2)                                                 --------->ANAC58                                                 --------->ANAC58                       <-----------HVH21         --------->ANAC55(2)              <---------ETT(2)                       ------>NtERF2             --------->ANAC46                 --------->ETT(2)                      ----------->HVH21         <---------LBD16              <-------GAMYB ---->ZmHOX2a(1) <-----------ARR10              ------>ZmHOX2a(2)          <---------TOE2(3) ------->LBD16   --------->GLK1(2)             <------ZmHOX2a(2)           <---------TOE1(3) ------->RAV1(2)<---------GLK1(2)             <---------ARR14(2)           <---------ANAC46 --ARR10--------->TOE2(3)  --------->O2       --------->ARR14(2)          <---------At5g28300<-------   cctgaaataatctcagtagaatctctgccaggtctgaaattcagacccgatccgcaacatatatgcctaggcctgttacggttatcgacagcaatgtgac  11741100                                                                                       --------->TOE1(2)                                                                                      --------->O2                                                                                      <---------ANAC46                                                                                      ===============                                                                                      <---------ANAC58                  <---------MYB46(3)                                                  <---------O2              ----------->HVH21                                                       <---------ANAC58              --------->ALFIN1                                                        --------->TGA1a          <-----------RAV1(2)     <------NtERF2                                       <---------TGA1a      --------->ZAT18             --------->ATERF1(1)           ----------->GT1       <---------bZIP60(2)      <---------ZAT18           ------->GAMYB                --------->DAG2    --------->ATHB12    <-      <---------ZAT14          --------->MYB46(3)           ====================================bZIP_DOF      --------->ZAT14          <---------ABI4(2)            ---------->DOF2   <---------ATHB12     --     --------->ALFIN1         --------->ANAC58           --------->YAB1      ------->TEIL      ------  <---------DEAR3(1)      --------->AtLEC2    <---------HSFB2a(2)         <---------YAB1--------->ALFIN1 <---------LBD16 <---------WOX13(1)--------->DEAR3(1)<-------TEIL<----------ID1<--------HAHB4  <----- ---ID1 ----------->RAV1(1)   --------->ANAC58--------->HSFB2a(2)----------->GT1   ----------->HVH21   aaacgcggtgcaccaggtgatggatgcaatgcaagcgccggtctacttcgagacatacatcataaaggggaaaaatatgaatcatttgacgtgggaagtg  11741200                                                                     ---------->DOF2         --------->ANAC55(2)                                      --------->ANAC58         --------->ANAC58                                         --------->ANAC58         --------->ANAC55(1)                               --------->ALFIN1         --------->ANAC46                                  <---------DEAR3(1)         <---------ANAC55(2)                               <---------AtMYB61         --------->ANAC58     <---------AtLEC2           <---------ANAC46                 <---------CCA1(2)      <---------ARR14(2)   <----------DOF2              <---------AtMYB61                ------->TEIL      --------->ARR14(2)  <---------ANAC58              --------->ALFIN1                <---------AtLEC2 ============================bZIP_DOF                 <---------ANAC46              <----------DOF2 --------ZAT18            <---------ANAC58            <---------ANAC58           ------>ZmHOX2a(2) ------->ZAT18         <---------ZAT18                <---------ANAC58   --------->ARR11(3) --->ALFIN1            --------->ZAT18      <---------ATHB12<---------MYB46(3) <---------ARR11(3) --- ----AtMYB61      ---------->DOF2    <------NtERF2    <-----------RAV1(1)<---------ARR11(3)       <--   gtggactcgatacggaagaacaaagtgtgcttgaatggcagagtcaataactccttgtgtggtggtgcaaggaaagagcttgatctctttgcatctcttg  11741300                                                                               ---------->TaMYB80                                                                               <---------KAN4(2)                                                                               <---------ARR14(2)                        ------->GAMYB                                          --------->ARR14(2)                    <---------WRKY38(1)                              --------->ANAC55(1)                    <---------WRKY45                                 --------->ANAC46            ----           --------->TOE1(3)                                         --------->ANAC58            ----           --------->YAB1                                            --------->ANAC58      <------NtERF2           --------->TOE2(3)   <------NtERF2                         <---------ANAC55(2) <---------LBD16     <----------DOF2<---------WRKY12                                 --------->ANAC55(2)--------->ALFIN1 ------>ETT(2)     --------->WRKY18(1)                              <---------LBD16    <-----------HVH21 -------ETT(2)    <-----------HVH21--------->YAB1                 <---------ZAT14      <---------ARR14(2)   tcgactgctttaatcttaatggtcaaccgagtcgccatgagaatgttgacatcgtggtgatcagagagaacacggaaggcgaatatgcaggtcgggagca  11741400                                                                                                  ---                                              --------->ARR11(3)                               ------                                          ---------->DOF2                                      <-----          --------->LBD16              --------->YAB1     ------>ZmHOX2a(2)               --------->TGA1a         --------->LBD16        ----------->HVH21        <------ZmHOX2a(2)                ===========        <---------LBD16       <---------At4g35610       <---------ARR14(2)         --------->KAN4(2) ----->ANAC58               <-----------RAV1(2)         --------->ARR14(2) <----------DOF2=========== ----->ANAC58<-----------HVH21--------->At4g35610  <-----------HVH21       =========================bZIP_DOF   cgaagttgttcccggtgtcatagagagttttcaggtgacaatgacaaagttctggtcagatcgtattgctaagtatgcttttgaatatgctcacttcagc  11741500                                                  ----------->HVH21                    --------->ZAT14   <----------ID1            <---------At5g28300       --------->ANAC58        <---------ANAC58            ---------->DOF2   ----------->GT1   --------->At4g35610   <---------ANAC58      ---------->DOF2   <<<<<<<<<<<<<<<<<LFY    <---------At4g35610   <---------ANAC58 ------->DOF2       <---------ZAT18   --------->ANAC58        <---------ANAC46 --->At4g35610      <---------ZAT14<---------ARR14(2)         <---------ANAC58 ----At4g35610 <---------At4g35610 --------->TOE1(2)   <---------ANAC58 ========bZIP_DOF --------->At4g35610 --------->ANAC46 <---------ANAC58                             < ======================bZIP_DOF    --------->ARR14(2)  <---------ANAC46                       -------   aaaaggaagaaagttacagcagttcacaacaatggaaaatacgaaaaactagctgatgcgtttttcttggagtcttgtcaagaagttgctaaaatgtatc  11741600  Previous    Next  AGI:  At1g32480.1    Description:  oxidoreductase. Identical to Putative isocitrate dehydrogenase [NAD] subunit-like 4 (IDH4) [Arabidopsis Thaliana] (GB:Q9LQK9;GB:Q1PFP9); similar to IDH1 (ISOCITRATE DEHYDROGENASE 1), isocitrate dehydrogenase (NAD+) [Arabidopsis thaliana] (TAIR:AT4G35260.1); similar to NAD-dependent isocitrate dehydrogenase beta subunit [Brassica napus] (GB:AAO61647.1); similar to NAD-dependent isocitrate dehydrogenase beta subunit [Brassica napus] (GB:AAO61645.1); contains InterPro domain Isocitrate/isopropylmalate dehydrogenase; (InterPro:IPR001804) Range:  from: 11741063    to: 11741970    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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