Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100    <------NtERF2 --------->ANAC58 --------->ANAC58 --->ARR14(2) --->MYB52(1)            --------->ARR14(2) ->TEIL                  <---------ARR14(2)                                                        -- ----ARR14(2)            ------->TEIL                                                          <----- >ANAC55(2)           --------->ANAC46                                                       <------- >ANAC58              --------->ANAC58                                                       -------- >O2---------->DOF2   --------->ANAC58                                                      --------- >ANAC58         <-----------GT1                                                            <-------- >ANAC55(1)    <---------GLK1(1)                         ---------->DOF2        ------>ZmHOX2a(1) <-- >ANAC46      <---------GLK1(2)            <----------DOF2                     --------->TOE2(3)-----   cggaggcaaagtcatggattttccacgtatattgagagcctaagtctttcatataaaccgaaagtgttttgtaaacaatttcctcaactctcttattatt  11705900     --------->TOE2(2)                                                                --------->ANAC58 ------->YAB1                     --------->DOF5.7(2)                                 --------->ANAC58 ----YAB1                         <---------MYB52(1)                                  --------->ANAC46 --ICU4                          --------->TOE2(3)                                   <---------LBD16< ->YAB1                          <-------GAMYB                                     --------->MYB46(3) >ICU4                          --------->MYB52(2)                               --------->ANAC46  <- -YAB1            --------->GLK1(2) <---------DOF5.7(2)                --------->MYB52(1) ------>NtERF2 -------YAB1 --------->ANAC58   <---------MYB46(3)                   --------->MYB46(3)<---------ATERF1(1) ---->YAB1   --------->ANAC58  <-------TEIL          ------->TEIL  <-----------GT1 XXXXXXXXXXXXXXXXXX   atcataacctatgccaagaaaatccaaactaggttcgttaacctcgagcttgatgcatctagactgttttaaccaagggttccaaaccacggctccatta  11706000         --------->ANAC58         --------->ANAC58       ---------->DOF2  <-----------HVH21  <-----------TGA1 --------->ANAC55(1) =================================MYC_MYB --------->ANAC58 --------->ANAC58 --------->O2 --------->ANAC46 --------->bZIP60(2) =================bZIP_DOF                                                             ------->TEIL <---------bZIP60(1)                                                                --------->ANAC58 --------->bZIP60(1)                                                                --------->ANAC46 <---------O2 <---------ATHB12                                           <---------TOE1(3) --------->TGA1a                                                   --------->AHL20(2) <---------ALFIN1 <---------TGA1a         <--------P                           --------->LBD16       --------->ANAC58 -----------STF1 <<<<<<<<<<<<<<<<<LFY                <----------DOF2     <---------TOE2(3) --------ALFIN1--------->YAB1                 <----------DOF2<---------LBD16--------->DOF5.7(2) XX>MIR166A-G --------->ICU4          <---------AHL20(2)    <---------LBD16--------->TOE1(3)   ------   cccacgtcacaaagcaataatccactggtagcaaacaaatttttatgtctttgagcttttaaaccgggattatttaaggttaactcacgcacctctacct  11706100                             ------>ZmHOX2a(2)                    <---------MYB46(3)                           <---------AGP1                        <---------YAB1                           <---------ARR14(2)                    <---------WOX13(1)             <----                           --------->ARR14(2)                 <---------YAB1                    <----                           --------->ARR11(3)         --------->TGA2(2)                         -----                 --------->AHL20(2)                  <-----------TGA1                <-------GAMYB   ----------->HVH21<---------ARR11(3)              --------->ANAC58                <---------ANAC46  <---------WOX13(1)--------->ARR11(3)              --------->bZIP60(2)             <---------MYB46(3) --------------->WRI1     <---------CCA1(2)         --------->ANAC58       ------->TEIL         <----   tgggattgacgcttactgaataaatcttggatctagttgataaaacgaattgaaacgtcatcttgtgattgttgatgaacgtcttgtcgttgaagagagc  11706200                                                            ==============HOX2a_HOX2a                                                            ------>ZmHOX2a(2)                                                           <---------GLK1(1)                                                           --------->GLK1(1)                                                           <------ZmHOX2a(2)                                                           ===============HOX2a_HOX2a                                                          <-----------ARR10                                                          --------->ARR11(3)                                                          <---------ARR14(2)                                                          --------->ARR14(2)                                                      --------->CCA1(2)                                                 --------->ANAC46                  <---------At4g35610                                                 --------->ANAC58       --------->ARR14(2)                                         ==========================HOX2a_HOX2a     --------->HSFB2a(1)                            --------->WRKY18(1)  --------->ANAC58       <---------ARR14(2)      ----- -----HSFB2a(1)            <-----------HVH21----------->HVH21      ------>ZmHOX2a(1)       ------>ZmHOX2a(1) -----ANAC58               <--------ZAP1 <------ZmHOX2a(1)<---------ARR11(3)       <---------HSFB2a(1) ---->HSFB2a(1)        XXXXXXXXXXXXXXXXXXXX>MIR3440B-3P  <------ZmHOX2a(1)         --------->HSFC1(2) -----ANAC58--------->MYB52(1)           =========================HOX2a_HOX2a      <---------HSFC1(2)   gttccatcgtttgcaaacggttttgaatcggtcaagagaagtaggagggacacgagataggatctcttcctccaaatcccatggaagcttctccttattc  11706300                                                                 -------->HAHB4                                    <----------DOF2              --------->YAB1                ------                                    <---------DAG2              <---------YAB1        <---------GLK1(1)  --------->AHL20(2)         ------------>CBF              <----------DOF2 --------->TOE2(3)<-------- <---------MYB52(1)         <-----------GT1  --------->AHL20(2)<---------TOE2(3)      --------->GLK1(1) ---->ANAC46             --------->ANAC46    <-----------TBP  --------->YAB1       <---------TOE2(3)   gccattaattagtttgtgtaagactgtaagtcacaatactttttcatatatatagacgactctttaatgataagttttcttaactagggtttccaactga  11706400                                                                                          -----------                                                                              <---------TOE2(3)                                                                              <---------TOE1(3)------                                                                          --------->CCA1(2) xxxxxxxxx                                                                         <---------ARR11(3) xxxxxxxxx                                                                         --------->ARR11(3)xxxxxxxxxx                                                                         --------->ARR14(2)xxxxxxxxxx                                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                 --------->ICU4           <xxxxxxxxxx                                                             --------->ARR11(3)       xxxxxxxxxxxxxxx         ----------->TBP<--------ATHB1                       <---------ARR11(3)----------->GT1 <-----         <---------AHL20(2)         <-------TEIL            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         --------->AHL20(2)    <-----------TBP     <---------ARR14(2)    <---------ARR14(2)xxxxxxxxxx --->ATHB12             <---------ICU4        <---------ANAC46  <---------TOE2(3)  <---------YAB1 -At4g35610          --------->YAB1<-----------GT1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxx   tttgttcacatataaatctccaagaataattctatatatacatttttggaggggatttttgaagataatgttgaagatttgaggtataattcaacaatta  11706500          <------MYB46(1)          <------MYB83         <---------MYB46(3)        --------->ALFIN1      <---------ANAC58     xxxxxxxxxxxxxxxx>smallRNA(i) ->CBF<---------ANAC58 --->AHL20(2)   <-----------GT1                                                     <xxxxxxxxxxxxxxxx xxxxxxxxxxxxx>smallRNA(fl3)                                         ------>ZmHOX2a(2) xxxxxxxxxxxxx>smallRNA(le3)                                       --------->ARR11(3) xxxxxxxxxx>smallRNA(fl3)                                          <---------ARR11(3) xxxxxxxxxxxxx>smallRNA(fl3)                          <---------AHL20(2)         --------->AHL20(2) - xxxxxxxxxxxsmallRNA(se3) <xxxxxxxxxxxxxxxxsmallRNA(i)--------->AHL20(2)       --------->TOE2(3)    - xxxxxxxx>smallRNA(si3)  <-----------GT1     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------AHL20(2)< ----AHL20(2)  <-----------GT1        <------ZmHOX2a(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       <- xxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  -------- xxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)  ---------   attcaaatgggtgggttttacccagtttaactctgttcggatcatggataacatgtttaattctgttctgatcttggataacattaatttttggaaaagt  11706600               --------->AHL20(2)            -------->HAHB4            --------->YAB1            <--------HAHB4            <---------ICU4                 --------------->AGL15            --------->ATHB51               <---------MYB59            <--------ATHB1              <-----------GT1           --------->ICU4           <---------AHL20(2)           <---------YAB1       --------->ATHB12                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           <---------ATHB51    --------->ICU4                              --------->TOE2(3)           --------->AHL20(2)  <---------YAB1------>MYB46(1)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxsmallRNA(si3)          <---------ATHB12  <---------AHL20(2)        --------->YAB1 -------->TOE2(3)             <---------TOE2(3) --------->AHL20(2)       -------->P -------->TOE1(3)           <---------AHL20(2)  <---------AHL20(2)      --------->MYB52(1) ---------MYB59<---------AHL20(2)  --------->AHL20(2)        --------->ARR11(3) --------ANAC55(2)   ----------->GT1--------->AHL20(2) <-----------GT1  <-----------GT1    --------->TOE1(3) ->DAG2    <---------ATHB12 --------->AHL20(2)  --------->AHL20(1)    <---------MYB52(2)   --------->TOE2(3) ->DOF2  --------->YAB1    --------->AHL20(2)------>MYB83    <---------ARR11(3)         <-----------GT1   tacctaaaaactaataattaaaaacgaaaattaatgatttaattaccaaatttaatataacaatatctctaaactaaccatatttcttatttaccttaac  11706700                         --------->AHL20(2)                     ------>MYB83                   <---------MYB46(2)                   <---------MYB59     --------->AHL20(2)                     --------->AHL20(2)                   <---------MYB111(1) <---------AHL20(2)               <----------DOF2                   --------->TOE2(3)--------->AHL20(1)           ------>ZmHOX2a(2)                  -                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <---------ARR11(3)             -------         <---------AHL20(1)        --------->AHL20(2)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   --         <---------AHL20(2)   --------->TOE2(3)          <---------AHL20(2)   <---------AHL20(2)   <-         --------->AHL20(1)  --------->YAB1             <---------YAB1  <---------DAG2  <---------AHL20(2)     ------>ZmHOX2a(1)   <---------AHL20(2)     <----------DOF2--------->ARR11(3)      --------->AHL20(2)    --------->TOE2(3)------>MYB46(1)<---------AHL20(1) --------->AHL20(2)    <---------AHL20(2)   ---   taatttcctaaaatatttctacctaatttaaacataaatatataattcttctttcatttttatttgatcttatactttatttatttgaattttatataaa  11706800  Previous    Next  AGI:  At1g32430.1    Description:  F-box family protein. Identical to Putative F-box/Kelch-repeat protein At1g32430 [Arabidopsis Thaliana] (GB:Q9LQL4); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G47390.1); similar to unknown [Arabidopsis lyrata] (GB:AAL65603.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 11704912    to: 11706305    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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