Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     <-------MYC2                   ------->MYC4                   ------->MYC3                   <-------MYC3                   ------->MYC2      ----------->HVH21    <---------ANAC58      <---------YAB1 ---->GT1          <-------PIF5 -->ALFIN1         <-------MYC4 >ANAC55(2)        ------->PIF5 -ANAC58          --------->ANAC55(2) -ANAC55(2)       <---------TGA1a -ANAC46          <---------ANAC55(2) -ANAC58          --------->O2 -ANAC55(1)       --------->TGA1a -bZIP60(2)       <---------O2 >O2<---------ANAC58 ----------->GT1                           <-----------GT1 -O2<---------ANAC46 <---------MYB46(3)                    --------->AHL20(2) >TGA1a      ----------->HVH21                             <---------AHL20(2) -TGA1a ====================bZIP_DOF                   <---------AHL20(2)      --------->TOE1(3) ->STF1 ---------->DOF2  --------->AHL20(2)            --------->AHL20(2)      --------->TOE2(3)   gaaattgtgtgaaagttgacacgtggttaaaatagtttcagcctatattgttctcgtttaattttttacaaaactgttcaacctcaaactttgttcgaac  11687700                                        <---------ANAC58                                        <---------ANAC58              --------->YAB1                                     <----------DOF2    <---------ANAC46                       ------                                    --------------->AGL15          ------>ZmHOX2a(1)           ------                                    <---------------AGL15          <----------DOF2             <-----                                   <-----------------AG <---------ANAC58 --------->YAB1       <------                                   ----------------->AGL1       ---------->ID1 <---------TOE1(2)    -                  --------->YAB1   <-----------------AGL3      <-----------GT1 <---------TOE2(2)-----   ----------->ARR10             <-----------GT1        <---------ANAC58<---------YAB1 <---------ALFIN1   tcactaagatgtgcttataaacataaaactctttctaacctttcttggtaagaacgttgagtgtttatccttttataatcgtatgtttcccacatttacg  11687800                                                                       --------->ANAC58                                                            <---------ANAC58                                                            <---------ANAC46      ----------->GT1                                  --------->WOX13(1) --------->DAG2                                       --------->AHL20(2)              <---------ARR11(3) --->ANAC46                                     --------->ANAC55(2)    --------->ANAC58 --->ANAC55(2)                              <----------DOF2 <---------ANAC58        --------->ANAC58- ----ANAC55(2)                              <---------DAG2  <---------ANAC55(1) --------->ANAC46   -- ---LBD16                                --------------->AGL15         --------->ANAC46            <- --------->DOF2                    ----------->GT1   <---------ATHB12----------->RAV1(1)     -------- ---->LBD16             <------ZmHOX2a(2)<---------------AGL15      ------->GAMYB   --------->ANAC58-   gaaaaagtgagtaatttgccaattggatcagcaagagaggttactactttatgtaatcaattacttgtaacccacacaatatacacaagaactcttgatt  11687900      --------->AHL20(2)     <---------ATHB12    --------->ANAC58    --------->ANAC58   --------->WOX13(1) <---------RAP2.6(3)    --------->ANAC46                  <---------ARR11(3) ------>NtERF2       <---------ZAT18           --------->At4g35610 --------->LBD16  <---------At4g35610          <---------At4g35610      ---------->DOF2 -------->ANAC46  --------->At4g35610         <-----------RAV1(1)     --------->ANAC46 -------->ID1    <-----------RAV1(1)       --------->ARR14(2)       --------->ANAC46 --------LBD16 <---------At4g35610         --------->MYB52(1)    --------->ARR14(2) ->ATHB12      --------->At4g35610       <---------MYB59  --------->ARR11(3) -------->RAP2.6(2)  --------->ZAT18    --------->ANAC46 --------->RVE1(1)               --------->YAB1   tgccgcaatcaaatatcaactgctgcacaaaacataagttctacataactgctgcataaaaatctcatatacacaaaagtcaataacccaataacattct  11688000                                                        --------->ANAC58                                                        --------->ANAC58                                             ----------->GT1                                            <---------HSFB2a(2)                                           ------>ZmHOX2a(2)               <---------------------WRI1                                         <---------ARR14(2)  --------->MYB52(1)                              --------->YAB1--------->HSFB2a(2) ------->GAMYB                <------ZmHOX2a(1)                             <---------YAB1----------->GT1   --------->ARR14(2)  <---------ARR11(3)--         <-------TEIL --------->YAB1    <------ZmHOX2a(1)    <---------ARR14(2)  --------->ARR11(3)<-   acataaacaaattcatagcttctatcacagtatcatcaaataggatcgagaaaaataaacgcataaccgagagggatagcgaagatttataagcaggaca  11688100                                                                               <---------LBD16                                                             --------->At4g35610        ---------->DOF2                                   <---------ARR14(2)        <---------At4g35610        =============                                   <---------GLK1(2)     --------->GLK1(2)     <---------At4g35610                                  <------ZmHOX2a(1)      --------->ARR14(2)    --------->At4g35610         *TSS                    --------->ICU4          <---------ARR14(2) --------->At4g35610   --------->ALFIN1  --------->At4g35610                <---------ARR14(2)  <---------ZAT2 <---------ANAC46    <---------At4g35610                --------->ARR14(2)  --------->ZAT2 <---------At4g35610 --------->HSFC1(2)                 <---------GLK1(2)   <---------At4g35610     - ------->ZAT14       <---------HSFC1(2)               ----------->ARR10    --------->ANAC46         - --------ZAT14      --------->GLK1(2)                <------ZmHOX2a(1)  --------->MYB52(1)        <--   gtgaggtgatgaaattgcagagaagctgctatgtaaggattctaaacgagtttgaggagattctgcttcagaaataccagcagcggaacatagagcgaga  11688200                           ===============bZIP_DOF                           ===============bZIP_DOF                           <---------TGA1a                           --------->TGA1a                      <---------At4g35610             <---------ANAC46          <---------HSFB2a(2)      <---------TOE2(3)          --------->HSFB2a(2)  <----------DOF2              <-------MYC3         <---------LBD16  --------->SPL7                    ------->MYC3--------------->AtSPL3   <---        ------>ZmHOX2a(1)------>NtERF2            --------->ANAC58    --------->ARR14(2)       <----- ====================================bZIP_DOF     --------->ANAC46    <---------ARR14(2)       ------ -------->ANAC58      --------->At4g35610         --------->ANAC58   <---------GLK1(1)         <----- -------->ANAC58   ---------->DOF2 <---------TOE1(3)---------->DOF2  <---------CCA1(2)         <----- ----ZmHOX2a(1)    ==================bZIP_DOF    --------->LBD16   --------->YAB1              <-----   ggaagccatcctctggagggggaaagcggacgtctttaaggctaccttctccacgaaagacacatggaatcatatccgaacatcatcaaatcagagggcg  11688300                       --------->ANAC55(2)                       --------->ANAC46                       --------->ANAC58                       --------->ANAC55(1)                       <---------ANAC55(2)                       --------->ANAC58                  <---------At4g35610                          --------->MYB59            <---------TOE1(2)                  --------->At4g35610    <---------DAG2      <---------MYB52(1)           <---------TOE2(2)       <------ZmHOX2a(1)     ------->GAMYB              --------->ANAC58               ------>ZmHOX2a(2) ---NtERF2----------------------->TaNAC69(2)          <---------ANAC58          <---------MYB46(3) -- ----bZIP60(2)  <---------ZAT18          <----------DOF2--------->ANAC58        --------->ATHB12   -- --->ALFIN1  <------MYB83   --------->ANAC58     <---------ANAC58            <---------AtLEC2    <--- ----ANAC58  <---------MYB46(3)    <---------GLK1(2)  <---------ANAC58   <----------DOF2--------->TOE1(2) ----ANAC46  <------MYB46(1)--------->ANAC46     <---------AtLEC2<------ZmHOX2a(1)<--------P--------- ----ANAC58 --------->MYB59 --------->ANAC58     <---------ANAC58=============================HOX2a_HOX2a   tggcatacaggagtttggttcgctcacgcaacgccaaaattctctttttgtgcttggctcgcagttaggaatcgactttccatggttgatcgtatgatga  11688400                  --------->ANAC46                  --------->ANAC58                  --------->ANAC58                  ----------->HVH21               --------->MYB46(3)              --------->ANAC58                                                             --------->GLK1(1) ------->ANAC58--------->DEAR3(1)                                                          <---------GLK1(1) ------->ANAC58--------->TOE1(2)                     --------->ANAC58                   --------->HSFB2a(2) ------bZIP60(2)--------->ANAC46                     --------->ANAC58                 --------->At4g35610 >YAB1        --------->ANAC58                       --------->ANAC46                 <---------At4g35610   catggaacaatgggacacccacgacctgtgttttttgctctagccctatggaaacacgagaccatctgtttttccaatgccactattcttctgaaatctg  11688500                                                      <---------ANAC46                                                      ----------->GT1                                                     --------->ALFIN1                                                   <---------ANAC46                                                 <---------At4g35610                                                 --------->ZAT2   <---------ARR14(2)                                                 --------->At4g35610                                <                                                 <---------ZAT2   --------->ARR14(2)          <------                                            <------MYB83       --------->ANAC55(2)          ---------                                            <------MYB46(1)    <---------ANAC55(2)         --------->HSFB2a(2)                  --------->ZAT18         <---------WOX13(1) <-----------GT1        <---------WOX13(1)                <---------------AtSPL8   <---------GLK1(2)   --------->AHL20(2)  <---------YAB1    <-              --------->GLK1(2)      --------->LBD16 <---------AtMYB61 <---------GLK1(2)   <---------HSFB2a(2)         ---------->DOF2         <-----------GT1 <---------ZAT14 <---------CCA1(2)--------->ATHB12 <-   gacttcaatcgcaaagaatgtgtacaaagatggtttttccacagattggtctgctgtggtgaattacatatctgattctcagcctgattgcatccagaat  11688600  Previous    Next  AGI:  At1g32390.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G11710.1); similar to hypothetical protein 23.t00046 [Brassica oleracea] (GB:ABD65629.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446) Range:  from: 11688109    to: 11688687    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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