Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                             <---------TOE1(3)                                           <---------TOE2(3)  <---------AHL20(2)                    <---------YAB1 --------->ICU4                        <---------AHL20(2)       <-------GAMYB <---------ATHB12                     <---------ICU4    <----------DOF2                      <------- --------->AHL20(2)         --------->ANAC55(2)     <---------ZAT18         <---------AHL20(2) ----HSFB2a(2)              <---------ANAC55(2)  <---------ANAC46           <---------YAB1 <--------- --->HSFB2a(2)    <---------AHL20(2) --------->ICU4<---------ZAT6<---------MYB52(1)      ---------->DOF2   gcaataaatagttttggcattttatgaaataagtgactaatttttatggtttagtgttctttcttcggttaaccaatttttattgcaaaaaaaaaggaac  11684600                                                                                            <--------                   <-----------HVH21                                                        <--------              --------->ANAC58<---------AHL20(2)                                        --------->PCF5   <---------TOE2(3)  <-------GAMYB               ------>NtERF2                        <---------SPL7   <---------TOE1(3) <---------MYB46(3)<----------DOF2                       ---------->ID1 --------- ---ID1   <-----------GT1 <---------ANAC46    --------->DEAR3(1)--------->ANAC55(2)<-----------RAV1(1) ------AtSPL8 --------->ANAC58--------->AHL20(2) --------->DEAR3(1)          <---------CCA1(2)   aaattagggttttatcaagcccgtcgttgcatataaatagtcttttcatcgccgcttgaaacagataagtgtttccttcgtctctctgtggtccgatatg  11684700                                                                                                  ---                                                                                                -----                                                                                              <------                                                                                              <------                                                                                            <--------                                                                                           --------->MYB55(1)                                                                                          --------->MYB46(3)                                                                                          <---------MYB46(2)                                                                                          <---------MYB52(2)                                                                                          <---------MYB111(1)                                                                                        <-----------GT1                                                                                        ------->TEIL                                                                 <---------ARR14(3)  ----------->GT1                                                                 --------->ARR14(3)  <---------bZIP60(1)                                                                 <---------ARR11(3)  <---------REM1(1)                                        <---------TOE2(3)        --------->GLK1(2)   --------->TGA2(1)      --------->YAB1                    ---------->ID1           --------->ARR11(3)  <---------TGA2(1) -MYB52(1)                         <----------DOF2               <---------ARR14(2)  --------->bZIP60(1) -ARR14(2)                  --------->YAB1              <---------YAB1    <---------MYB46(3)--------- >ARR14(2)       --------->YAB1<---------GLK1(2)       <---------TOE1(2)  --------->MYB111(1) <------   tctccctataatctctgtttcatagtttaatcatattcttttgtggttttgaattcttatgttcgaaaatcttgagtagttgctgtgatgtaactaccgt  11684800                                       --------->TOE2(3)                                 --------->YAB1                            <------NtERF2                           ------>NtERF2                          <---------ATERF1(2)                                             ----------- -------->HVH21           --------->ATERF1(2)                                    <---------AtMYB61 ---->ALFIN1            <---------DOF5.7(2)                                    --------->ALFIN1 ---ANAC58             --------->WRKY12--------->TOE1(3)                     <---------ANAC46 ---ANAC58             ----------->HVH21                                     <---------ANAC58 -At5g28300            --------->WRKY38(1)                      ---------->ID1 <---------ANAC46  ---- >MYB52(1)            --------->DOF5.7(2)                  <----------DOF2   <---------ANAC58<------- ---ANAC46----------->GT1--------->RAP2.6(3)          <----------DOF2  <---------AHL20(2) -----------   gtgccagagatgaagttattcatcgttgacggcaaacataaccttagagttctaagcttttcttttgttctattttttggtgtgtggtcgaagtgacgat  11684900                                                               --------->ARR14(2)                       ----------->HVH21                       --------->GLK1(2)                  <<<<<<<<<GATA-4                       <---------ETT(2)                  <<<<<<<<<GATA-2                       --------->ETT(2)                  <<<<<<<<<GATA-3                   <---------ARR11(3)                          <----     <-----------GT1 --------->At4g35610            --------->ARR11(3)------>ZmHOX2a(2)         ----- >HVH21           <<<<<<<<<GATA-1                  --------->GLK1(1)<-----------ARR10          ------ ------>DOF2    --------->WOX13(1)                 <---------GLK1(1)--------->AGP1         ---------- --YAB1      <-----------HVH21                  <---------YAB1 <---------ARR14(2)   <-----------GT1 < >TGA1<---------At5g28300                   <------------CBF  <---------GLK1(2)  --------->YAB1<-----   aaagaattcacagtctgtcaatccactgacaacatttgagtgatgttattgtgatatctcgacaggttctgatctactcttaataaaaaccctcccaatg  11685000                                               <---------YAB1                                             <---------ICU4     <---------AHL20(2)                 *TSS<---------YAB1     <---------YAB1                    <---------At4g35610 ----ATHB1                             --------->At4g35610 ---->YAB1    --------->ATHB12       <-----------RAV1(2) --->ICU4    <------ZmHOX2a(2)     <---------ANAC46--------->YAB1 -->CBF     --------->ARR11(3)     <---------PCF2 <---------YAB1         <---------RAP2.6(2) ---------AHL20(2)          ---------->DOF2 --------->ICU4      ----------->GT1  --------->YAB1 ----ATHB12 <---------ARR11(3)  --------->ALFIN1--------->YAB1 ----------->GT1--------->YAB1   atttttttttattagatcattagttttgttgaaagtggggcagatgatgattatcataaaacaaatgggtaatttgcgactgataatattacattgatgt  11685100                                                                        <---------ANAC46                                                                        <---------ANAC58          --------->HSFB2a(2)                                   <---------ICU4   <-----------GT1 <---------bZIP60(1)                       --------->YAB1--------->REM1(2) <-----------GT1   --------->bZIP60(1)           <---------AHL20(2)     <---------ANAC58   gtttttcaccttggagaactgatgtccccaatctcatattctaagttctattttttttggtattgataatgaattcgtgaagagttcgatttgtttcttc  11685200                                                          <---------ANAC46                                                      <---------At4g35610                                                      --------->At4g35610                                                      <-------GAMYB                                                 <---------ANAC55(1)                                                 --------->bZIP60(1)                                                 <---------bZIP60(1)                                                 <---------O2                                                 --------->TGA1a                                                 <---------TGA1a                                                 --------->O2                                                 <---------ANAC46                                                 =============MYC_MYB                                                 <---------ANAC55(2)                                                 <---------bZIP60(2)                                                 <---------ANAC58                                              ----------->TGA1                                              ----------->HVH21       <------NtERF2                                          <---------AHL20(2)         <------MYB46(1)                                      ----------->GT1--------->MYB52(2)            --------->ANAC58     <---------ANAC58<---------ANAC58    <------MYB83            --------->ANAC58     <---------ANAC46--------->ANAC55(2)<---------DEAR3(1)         ------          ---------->DOF2        <---------ANAC58===========================MYC_MYB           <------          =================================================bZIP_DOF<--------P                 <------        --------->TOE2(3)  xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)       <---------ICU4--------->At4g35610  --------->AHL20(2)    <---------TOE2(3)        --------->GLK1(2) --------->YAB1 --------->WOX13(1) <------NtERF2----------->STF1<---------TOE1(3)       <---------GLK1(2)   ttgtcataaacattaagccaattagcagagcaagggcgtctagtttaaatgacgtgagttgccttgaaggttggcgataacaagttttgcgattctccgt  11685300                                xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                          <---------ICU4                       --------->YAB1                 <---------MYB52(1)   --------->YAB1<---------ANAC46       --------->ANAC46                          ---------->DOF2 --->LBD16       <---------ANAC58<------NtERF2     <-------TEIL        <---------GLK1(2) ---ANAC58       <---------ANAC58xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <---------ARR11(3)       <---- ---ANAC58      ---------->ID1  xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->ARR11(3)       -----   gcctatcaaattttgtttttcgtattgataatggcctcgaacaagtcgctacattcgttttttttcttccaaagattttgtttcaaaagaagtctcttat  11685400       <---------YAB1      <---------AHL20(2)      --------->AHL20(2)     --------->AHL20(2)     <---------AHL20(2)     --------->YAB1  --------->ATHB51                                 --------->MYB52(1)  --------->YAB1                                   ------>MYB46(1)  <---------ICU4                                   ------>MYB83  <--------HAHB4                               -------->P                                      <-----  -------->HAHB4                       --------->YAB1                                       <--------  <--------ATHB1                      <------ZmHOX2a(2)                        <---------TOE2(3) <---------ATHB51                     <---------YAB1                       <---------At4g35610 <----- <---------YAB1               --------->MYB52(2)  --------->MYB55(1)       --------->At4g35610<------ --------->ICU4           ----------->GT1     --------->MYB52(1)    <---------ANAC58        --------- -----ANAC55(2)         <-----------RAV1(2) <---------MYB52(2)      <---------ANAC58       <---------ANAC46 ---->ANAC55(2)   --------->YAB1 <-----------GT1--------->MYB46(3)<---------YAB1  <---------YAB1 ----   gtaataattaaaattcagaataaaaatcaggttatttacgatcataactaaccaaacgcttagacaatatgcttatcagttgagattatagtcccgtagg  11685500  Previous    Next  AGI:  At1g32385.1    Description:  snoRNA. snoRNA Range:  from: 11685040    to: 11685124    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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