Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                              --------->ARR14(2)                                            <---------ARR14(2)                                           --------->At5g28300             <---------ZAT14               <-------GAMYB             --------->ZAT14              <---------MYB46(3)         <---------ALFIN1               --------->ZAT18                                  <---------DEAR3(1)        --------->ZAT14                 <---------ZAT14                                 --------->DEAR3(2)        <---------ZAT14      ------->GAMYB----------->GT1                              --------->MYB52(1) --------->AtMYB77          <---------MYB52(2)     ---------->DOF2                    <------ZmHOX2a(1) ----At4g35610              --------->MYB46(3)   --------->ANAC46       --------->At4g35610 --->At4g35610      <---------AtLEC2    <---------ZAT18        --------->YAB1     ---------->DOF2----   tgccagttaccacactggagttgcattgcaacgagcgtctagtgcggttacacaaaagcctggaattagaactcatcagaagtggaaaggaccggcgaaa  11675100                       ------>ZmHOX2a(2)                     --------->ARR14(2)                 <---------WOX13(1)               <---------MYB46(3)               --------->MYB55(2)               --------->ATHB12             --------->At5g28300        --------->ARR14(2)        <---------ARR14(2)       <---------GLK1(1)       <----------TaMYB80       --------->GLK1(1)       --------->CCA1(2)                  <-----------GT1    <---------ALFIN1      --------->ARR14(2)             --------->YAB1         <---------REM1(2)      ---------->TaMYB80           <---------WOX13(1)   <-----------GT1                           <--      <---------ARR14(2)    --------->ARR11(3)      <----------DOF2                    <-----------GT1 ----->GLK1(2)<---------YAB1<---------ARR11(3)  <----------DOF2         --------->MYB52(1)        <--   atcagtcggatatacggtgattggatcgacgatattgaatgatgttacctctttcttttttctacacatttagataactgctaagaaaattacaatctcc  11675200                                                     <---------MYB46(3)        <---------ICU4         ----------->GT1                          <-----------RAV1(1)   <---------REM1(1)      <---------ANAC58                         --------->ARR14(2)  <-------GAMYB                   --      <---------ANAC58                         <---------ARR14(2) <---------MYB46(3)              <--      <---------AtLEC2                         ------->TEIL       --------->MYB52(2)             <--- -------DAG2<-------TEIL                      <---------CCA1(2)   <-----------RAV1(1)           ----- --------DOF2          <---------ZAT6   --------->ICU4          <---------ANAC46 <---------YAB1<-----   ctttttttgcatggtacattttgtagagtttgtatatgtgtaatccttgtatctgttgttgttgttgtttgttgttgtagattatgacttatgttatatt  11675300                                                                               <---------ICU4                                                                      <---------AHL20(2)                                                                ------------>CBF       <----------DOF2                                      --------->ANAC58   --------->YAB1      <XXXXXXXXXXXXXXXXXXXXMIR835-3P                        --------->ANAC58  <---------ATHB12   <----------DOF2                                     --------->YAB1--------->AHL20(2) ------->YAB1                                      <---------YAB1    <---------AHL20(1)             - -------YAB1                                   <---------ICU4  ----------->RAV1(1)          <------ZmHOX2a(2) --------GT1    <----------DOF2             --------->YAB1---------->DOF2  <---------AHL20(2)   <---- ---->YAB1  <---------CCA1(2)          <---------ICU4 <---------YAB1 <---------AHL20(2)    <---------ARR11(3) ----AHL20(2)------->TEIL  <---------AHL20(2)  --------->ATHB51--------->RAP2.6(2)         --------->ARR11(3)   atcatctttcttttgtatcttttccatatttgattttttaaaaatttcataatttgattataaagccacaattttttttaatcataactagaagatcgat  11675400                                                               <----------DOF2                                                              <---------ANAC58                                                              <---------ANAC58                                                            ------->TEIL                                                  <--------------OsCBT                                       <---------WOX13(1)--------->ANAC58                                      <------------CBF   --------->ANAC55(1)                                     --------->ATHB12    --------->ANAC46                                    --------->AHL20(2)   --------->ANAC58 --------->At5g28300                <---------AHL20(2)   <---------ANAC55(2) ---------->GT1                     --------->AHL20(1)   <---------O2    ---------->DOF2           <- --ZmHOX2a(2)                      --------->AHL20(2)    --------->ANAC55(2)                  -------   caccgtaaaactagaatgtagaattagattagagcaaattaattggccacgaagataacacgtagcttttgtcaccaaagactcgctcaaaactctaaaa  11675500                                                                          --------->TOE1(3)                                                                          --------->TOE2(3)                                                                   --------->ANAC46                                                                   --------->ANAC58                             ------>ZmHOX2a(1)                     --------->ANAC55(1)                      <----------DOF2                              --------->ANAC58                --                     <---------DAG2<-----------GT1               <---------ALFIN1            <<<<<<<< ---------DOF2  <---------MYB59 <---------CCA1(2)              <---------ALFIN1         <----------DOF2 --->DOF2       <---------DAG2<---------ICU4          <-----------GT1   -------->P <-----------GT1---   gctttggcatatgtatgaccttacctttctcctcatttctctcttccccattgacattacccttcccacacggcaacctcagaataaaccctttcttctt  11675600                                                  --------->ZAT14                                                  <---------ZAT14                                                --------->ANAC46                                              <-----------GT1                                            <-----------HVH21                                         <---------MYB46(3)                 --------->ANAC58        --------->TOE2(2)              ------>NtERF2                        --------->MYB46(3)  --------->ANAC46                    --------->LBD16                       --------->ANAC58  --------->ANAC58                   <---------RAP2.6(2)                    --------->ANAC46  --------->ANAC58                  ------>ZmHOX2a(2)                       ----------->HVH21 ---->ZmHOX2a(1)                  <---------ARR14(2)                   --------->ARR14(2) <TBF1-------->P     --------->YAB1 <---------LBD16  --------->ANAC58  <---------ARR14(2) ------>TOE2(3)   --------->ANAC46--------->ARR14(2) --------->ANAC58 <---------CCA1(2)   cctcaagctacctatgaaaccagtcacaatatttctgatccggccgtttcactgcacggtctcaaaatgtctatatccacgaccgagacagacaatttca  11675700                              <---------YAB1                          <-----------HVH21                         --------->LBD16                        --------->LBD16                                   <---------ARR14(2)                       --------->LBD16                                --------->LBD16                       <---------LBD16       <---------MYB52(1)     <---------LBD16         <--------                    ------>ZmHOX2a(1)   <---------WRKY18(1)        <-----------GT1     <<<<<<<<<TBF1                <---------ARR14(2)     --------->WRKY38(1)   <---------ICU4        ------>ZmHOX2a(1)                --------->ARR14(2)     ----------->HVH21    <---------YAB1--------->ARR14(2)<--------   aaccagtccataccctcgtttcctccccggtcaccatagtcttgaccggtagtcttctcttcatcattttcacggggttcttctccttcttcttctgtgg  11675800                                                                      --------->MYB46(3)                                                               ------>MYB46(1)                                                               ------>MYB83                                  ------->GAMYB              --------->TOE2(3)                                 --------->MYB46(3)          <---------MYB59                      --------->ARR14(2)                  <-----------GT1       <---------TOE2(3)       <-----------GT1        ------>ZmHOX2a(1)------->GAMYB  <---------AHL20(2)  <---------ARR14(2)        --------->DEAR3(2)   -------->P -ANAC46 <------ZmHOX2a(1)   <---------KAN4(2)--------->ARR14(2)     ------>MYB83 ----------->RAV1(2) ---RAV1(1)          <------ZmHOX2a(1)        <---------ARR14(2)     ------>MYB46(1)       --------->TOE2(2)   atgtttatttaggaaactcatgaggatttggaataaccatcgaaaccgaaaccgtcctagtaacctaatccaaccgtctaatccacctgaaaacctcggt  11675900                                             ---------->DOF2                                   ======================HOX2a_HOX2a                                   ------>ZmHOX2a(1)                                   <---------YAB1 <------ZmHOX2a(2)                                   ==================================HOX2a_HOX2a                          --------->LBD16  ----------->HVH21                   <---------ICU4 <---------------AGL15       <------ZmHOX2a(2)                  <---------ATHB12--------->TOE2(3) --------->TOE1(2)           --------->ATHB12      ----------------->AGL1   --------->ANAC58          ================================HOX2a_HOX2a  <---------SPL7          <---------YAB1<---------LBD16  <---------ANAC46 --------->ANAC58          <------ZmHOX2a(2)      ----------------->AG  ----------->HVH21                          ---         <---------ARR11(3)    <---------ARR14(2)<---------ARR11(3)                               <--         --------->ARR11(3)    --------->ARR14(2)--------->ARR11(3)      <---------MYB52(1)<---------TOE2(3)   ctcgactccaagatcattgaatcattccctgagtatccttattcggtgaaagatcatgggacggatcaatgttccatttgtttaacagagtttatggatg  11676000  Previous    Next  AGI:  At1g32360.1    Description:  zinc finger (CCCH-type) family protein. similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT2G35430.1); similar to hypothetical protein OsI_026903 [Oryza sativa (indica cultivar-group)] (GB:EAZ05671.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) Range:  from: 11672911    to: 11675319    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g32361.1    Description:  ATL1F; protein binding / zinc ion binding. Identical to Putative RING-H2 finger protein ATL1F precursor (ATL1F) [Arabidopsis Thaliana] (GB:Q9LQM2;GB:Q1G3T2); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G35420.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63393.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 11675511    to: 11676728    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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