Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     --                                                                                                  <--                                                                                                 <---                                                                                                 <---                                                                                                -----                              --------->REM1(1)           ------->TEIL                         ------                              <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                            ------                             <-------TEIL            <---------AtLEC2                         -------                         ----------->GT1       --------->LBD16                           <---------At4g35610                    <---------YAB1           <---------LBD16                             --------->ZAT2                  --------->YAB1           <---------ARR14(2)                            <---------ZAT2 ------HVH21     <---------YAB1--------->TOE2(3)<---------MYB52(1)                       --------->At4g35610   cagtgaaattggagggtttatgatgtttagttacatcaatggacacatccggtttgtatgaatcccatggctgaaaacaattccacttccaagctgaacc  11668300                                                                                   <------MYB83            ------>ZmHOX2a(2)                                                      ----------->GT1          --------->ARR11(3)                                            --------->ARR14(2)    <---------ZAT14                                                     <---------ARR14(2)    --------->ZAT14                                                     --------->ARR11(3)   <----------DOF2                                                      <---------GLK1(2) ------->SPL7                                                          <------ZmHOX2a(1)            - -------MYB52(1)                                             <---------SPL7        <------MYB46(1)<-- ------SPL7 ===============HOX2a_HOX2a          <---------DAG2<---------MYB52(1)   <---------MYB46(3) --------HVH21                                  <----------DOF2    --------->ARR14(2)    <-----------GT1 ---->DEAR3(1)                            --------->CCA1(2)  <---------RAP2.6(3) <---------ANAC58==== --->DEAR3(2)                     <---------ATHB12<-----------GT1  <---------ARR14(2)  --------->KAN4(2) --->MYB46(3)       <------ZmHOX2a(1)  ----------->GT1  --------->MYB46(3)       <---------ANAC46---- >TEIL    <---------ARR11(3)--------->ANAC46 <-----------GT1<---------MYB46(3)   <---------ANAC58----   gtccggtttagtgatcttagtaggaggtataccccaataagtggatataactttaccatcggccgttcggataggattttctggctggttattcccactt  11668400           <-----------HVH21          ----------->HVH21        <---------ANAC58        <---------O2        <---------ANAC58        --------->O2        <---------ANAC46        <---------bZIP60(2)        <---------TGA1a        --------->TGA1a        <---------ANAC55(1)        <---------ANAC55(2)        --------->ANAC55(2)       ----------->bZIP910(1)       <-----------------------TaNAC69(2)      <---------TGA2(2)     ----------->TGA1                                               ------>ZmHOX2a(1)     ----------->HVH21                                          --------->ARR14(2)   --------->At4g35610                                          <---------ARR14(2)     <------ZmHOX2a(1)   <---------At4g35610                                      --------->LBD16  ------>ZmHOX2a(1) -------->LBD16                                            --------->At4g35610     --------->LBD16 -------LBD16    --------->At4g35610                       <---------LBD16  --------->TOE2(3) =================MYC_MYB                                  ----------->RAV1(2)   <---------LBD16 ----->MYB52(1)  <---------At4g35610                   <-----------HVH21   ----------------->AG ---->P----------->STF1                             --------->At4g35610    ----------------->AGL1   accggagatgacgtgtcagagctcaatagccgaacattgggcaagtggctaatgagatgtcccctgaatcctccaattcctaaaccggaggattgtaccg  11668500                                   ------>ZmHOX2a(2)                         --------->At5g28300                        ----------->GT1                        <---------ANAC46                      <---------ZAT18                      --------->ZAT18                           --------->ALFIN1                      --------->ZAT14                ----------->RAV1(1)                      <---------ZAT14               --------->MYB46(3)  ------->TEIL            <-----------HVH21      =============HOX2a_HOX2a   <---------ANAC46        --------->MYB52(1) ---------->DOF2   --------->ICU4   <---------ANAC58          <---------MYB46(3) <---------YAB1      --------->ALFIN1    <------ZmHOX2a(1)    <---------ANAC58      <---------AtMYB61   aagatgatagtaccggtcgaagagtgcggtaaatcgatctgtaggacatgagtaacaacagttggggtgtgatgtatcaacgagttttggtggtgagaat  11668600                                         ------>ZmHOX2a(2)                                       --------->ARR11(3)                                       <---------ARR11(3)                                    <---------WOX13(1)                          <---------YAB1                                  --------->ATHB12                           --------->ICU4   <------             <---------YAB1      --------->ICU4                 <-----------RAV1(1)   --------->CCA1(2)           --------->YAB1        <---------YAB1            <-------TEIL<---------At4g35610    -------           <---------ICU4  <---------TOE2(3)   --------->ARR14(2)      --------->At4g35610 ------->TEIL          --------->ICU4   <---------TOE1(3)   <---------ARR14(2)     *TSS--------->AHL20(2)<--------   agaaatactaaaattatgagagatggtttaaggttatgattgatcttcagattgggttatgttcatatgtggcagataaattatgaagagatgaatttat  11668700                                                                              ------->MYC3                                                                              <-------MYC3                                                                             --------->ANAC58          <---------ICU4 --------->WRKY18(1)          --------->YAB1         --------->ANAC55(2)         <---------YAB1 <--------ZAP1   <---------ANAC46                     --------->ANAC58 <------ ---AHL20(2) <-----------GT1            <---------ANAC58                ----------->HVH21  <---------AHL20(2) -->AHL20(2)<---------YAB1              <---------ANAC58            --------->ICU4   <-----------GT1 ---TBP  --------->ICU4 <-----------HVH21      <------ZmHOX2a(1)<------ZmHOX2a(1) ----------->GT1   atacacgagtgattattactaatctcggtcaagttcaaagtttcttggaggatgaataagaatggaggaaatgtttgacacgttttgttacattttatgt  11668800                                                                    --------->TOE2(3)                                                                  --------->ARR11(3)                                                                <---------YAB1                                              <-----------GT1<---------YAB1                                <---------TOE1(3)            --------->AHL20(2)                  ----------->GT1      <---------YAB1     <---------AHL20(2)     <---------ICU4                 --------->TOE1(2)<------ZmHOX2a(1)       --------->AHL20(2)     --------->ATHB51      ----------->GT1           <---------TOE2(3)         --------->AHL20(1)     <--------ATHB1     --------->DAG2         <---------ANAC55(2)           <---------AHL20(1)    <---------ATHB12  ---    ---------->DOF2         --------->ANAC55(2)     --------->YAB1<---------ARR11(3)   <---------CCA1(2) ---YAB1  ---------->DOF2 --------->AHL20(2) ---------->ID1  <---------AHL20(2) <---------ATHB51 ----   ttgtggaaaagtaaaagaacatgtgaaattacttaaggattgtgtttgtcaccatcatattatattattatcttattgttcaataattcatatattcaaa  11668900                                          <-----------GT1                                         <---------YAB1                             --------->AHL20(2)                                ------>MYB46(1)                                    <---------YAB1                           --------->ANAC58                                      --------->YAB1                           --------->ANAC58                                     <---------YAB1                <---------ANAC55(2)   --------->AHL20(2)             <------ZmHOX2a(2)     --------->ZAT14       --------->ANAC46                         --------->ARR11(3)     <---------ZAT14 --------->CCA1(2)<---------AHL20(2)            <---------ARR11(3) ------>DAG2    --------->ANAC55(2)   <---------YAB1     <-----------GT1   <-----------GT1       ---- ------>DOF2  <-----------GT1   ------>MYB83  --------->ANAC46     <---------At4g35610     ----------   aaagtactacagtttatcacgagatagacacaccaactatattattacacatcatgaaattacaaactcagatcatgttactatcataatatacaaagac  11669000                      <----------TaMYB80                     --------->ARR14(2)                     ---------->TaMYB80                  <---------ANAC46                  <---------ANAC58           ------>ZmHOX2a(1)                       --------->TOE2(3)    <---------YAB1           <---------------AGL15                  ----------->GT1     <---------------AGL15           ===========================================================================MADS_MADS ------->GT1      <---------ANAC58    <---------AHL20(2)      --------->GLK1(2) >DOF2  <-----------GT1 <-----------GT1 --------->TOE2(3)    <---------GLK1(2)      ----------->GT1--   gcttaaatttttcctatatttcgtatataccttgttatattttcttaaacaaatgttaatttagaatctatactatatttgataaatagaaaaattaaga  11669100                                                            --------->ANAC58           ----------->GT1                                  --------->ANAC58      --------->YAB1                                      --------->ZAT6      --------->AHL20(2)      --------->HSFB2a(2)      <-----------GT1          --------->ANAC58     <---------YAB1   --------->ALFIN1              <----------DOF2             --------->ANAC58    - --------->GT1  --------->AHL20(2)  --------->YAB1  <---------DAG2              --------->ANAC46-----   agagtttataatatagaaaaaaatgtggttctctcgaatcagaatgaattgctacttttaccactcaaacacacacacacacacacaaaaaaaaaaaaaa  11669200  Previous    Next  AGI:  At1g32350.1    Description:  AOX1D (ALTERNATIVE OXIDASE 1D); alternative oxidase. Identical to Alternative oxidase 3, mitochondrial precursor (AOX3) [Arabidopsis Thaliana] (GB:Q8LEE7;GB:Q8VY45;GB:Q9C612;GB:Q9LQM4); similar to AOX1A (alternative oxidase 1A), alternative oxidase [Arabidopsis thaliana] (TAIR:AT3G22370.1); similar to alternative oxidase [Populus tremula x Populus tremuloides] (GB:CAB72441.1); contains InterPro domain Alternative oxidase; (InterPro:IPR002680); contains InterPro domain Ferritin/ribonucleotide reductase-like; (InterPro:IPR009078) Range:  from: 11666957    to: 11668670    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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