Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                    <-----------GT1                                                                     <----------DOF2            <----                      <---------GLK1(2)                             <---------ANAC46      --------->TOE1(3)                    ----------->ARR10                               <---------ANAC58      --------->TOE2(3)       <-----------GT1--------->ARR11(3)                            <---------ANAC58   <-----------GT1     <---------AHL20(2)           ---------->DOF2               <---------At4g35610  <----------DOF2<   tcgctatttatacgatttggattagattttgttagataaagaaatagtctagctattctaatatacagttgctttaactcaatatttctttaccttagtt  11574900                  <---------CCA1(1)                 <---------ARR14(2)                 <---------ARR11(3)           --------->HSFB2a(2)                    <---------AHL20(2)           <---------HSFB2a(2)               --------->AHL20(2)       <---------AHL20(2)      ----------->GT1<---------AHL20(2)                    --------------->AGL15     <---------AHL20(2)        <---------MYB46(3)--------->AHL20(2)                 <---------------AGL15    <---------AHL20(1)     <-----------RAV1(2)--------->AHL20(2)        <---------TOE2(3)    --------->AHL20(1) <------MYB46(1)       <---------AHL20(1)       ---------->DOF2   <---------ICU4 --------->AHL20(2)    <------MYB83          --------->AHL20(1)     <<<<<<<<<MYB98  ------>ZmHOX2a(1) <---------AHL20(2)   --------->MYB59        <---------AHL20(2)   <---------YAB1   --------->TOE2(3) -----AHL20(2)   --------->ARR11(3)   --------->YAB1          <----------DOF2--------->MYB52(2)   --- ---------AHL20(2)<---------RVE1(1)--------->WOX13(1)    <----------DOF2<---------TOE1(3)        <---   aatttatatatttttggaagatatttggtccagttgttaatcaaaaatttatttaatgtctttgcattatgttaaaggtttgtttcctaaaaattgcaaa  11575000                                                   <---------ICU4                                                  --------->ICU4                                                  <---------YAB1                            <---------ICU4      <---------ICU4                            --------->YAB1      --------->YAB1              <---------ANAC58                 <---------YAB1                       <----------DOF2              <---------ANAC58                 <---------ATHB12                 --------->KAN4(2)         <---------ICU4    <---------ATHB12    --------->ICU4                  <---------ICU4      << ------>YAB1  <---------ANAC46           --------->DAG2                <---------ZAT14       <------- ------ATHB12 <---------AtLEC2          ---------->DOF2   --------->ICU4      <---------YAB1 --------   tcatactataaatattgcatgaaattcaaatcatgaactgctaaaagtaatcataatgaaatttttagtcgagttctctgatcattcttttttttttaaa  11575100                               <----------DOF2                             <---------YAB1                           --------->YAB1                        <---------ARR14(2)                --                 <---------ANAC58                                --------->ARR14(2)             -----     <---------MYB46(3)   <------ZmHOX2a(2)               <---------ZAT2                    --------- <<<<<<<<<<<<<<<LFY    ------>ZmHOX2a(2)                  --------->At4g35610           ---------->DOF2 --AHL20(2)      <---------ANAC58                         <---------At4g35610     <---------AHL20(2) ->AHL20(2)    <-----------GT1 --------->TOE2(3)          --------->ZAT2          --------->AHL20(2)-   tccacattggtttgatttttcttgatcgatcatctttaacatcactaatatacaataaacagctgcaaaaccgtggcagactaattaaaaaaaagaaagg  11575200                                                                                <---------ANAC46                                                                                <---------ANAC58          <---------AHL20(1)                                                 ------->PIF5      ------          --------->AHL20(1)                                                 <-------PIF5   ---------     ----------->GT1    <------ZmHOX2a(1)                              --------->ANAC46   ---------->DOF2 -------->DOF2         <----------ID1            --------->ATHB51  ----------->TBP--------->ALFIN1 ------>GT1 <------------CBF              <------------CBF       ----------->TBP<---------ANAC58    *TSS ->DOF2   --------->ARR11(3)   --------->YAB1    --------->AHL20(2)<---------AHL20(2) --------->ANAC58 -------->DAG2    ---------->DOF2  ---------->DOF2   <-----------GT1 <-----------GT1  --------->ANAC58   gtaaagctggaaaatattgacaaagaggacaaatcagaaaagactattgaataatttactctcccttatataaacaccacgagcgtggaagccaaagagc  11575300              --------->AtMYB61           <---------ALFIN1           --------->ANAC46           --------->ANAC58         ----------->RAV1(1)         <---------ALFIN1         --------->AtMYB61                                                            --------->ARR11(3)      --------->ANAC46 <-----------GT1                                                <---------ARR11(3) <-----------GT1---------->DOF2                                                 <---------ATHB12 ------>CBF--------->ANAC58                                    --------->AHL20(2)--------->YAB1 <<<<< ->DOF2 --------->ANAC46                             ---------->DOF2  --------->MYB46(3) <----------DOF2   aattttctcccccacaccaaaagataaacctctctctctctatctatcttatgtcaaaagacagatttattaacaaacacaaatcataaatctttttctt  11575400                                                                                   --------->ANAC46                                                                                   --------->ANAC58                                                                       <---------ICU4           -----                                                                       --------->YAB1           -----                                                                      <---------YAB1  --------->GLK1(2)     ---------->DOF2           --------->YAB1             <---------YAB1 --------->At4g35610 <-------  --------->LBD16   --------->YAB1                  <---------ANAC46--------->YAB1 --------->ANAC58  <---------HSFB2a(2)          <-----------GT1  ------>ZmHOX2a(2)  <------ZmHOX2a(2)  <-----------ARR10  --------->HSFB2a(2)       --------->YAB1    <---------ARR11(3)  --------->ARR11(3)  ------->TEIL <<<<TBF1          <---------ATHB12           --------->ARR11(3)  <---------ARR11(3) <---------GLK1(2)   cttccgagaaagaatgtctaaatcatcgtataatcacatcttcatcttgatcttgtgtttatgtttgagatcatcatcagccttcacgaatctcaacacc  11575500                                                               ------>ZmHOX2a(2)                                                      --------->At4g35610                                                   --------->WRKY38(1)                                                   --------->WRKY12                                                  <-----------HVH21                                                <---------DEAR3(2)                                                <---------MYB46(3)                                               --------->SPL7  ==========================HOX2a_HOX2a                                       --------->WOX13(1)    --------->ARR11(3)                                 <---------At4g35610  ----------->RAV1(2)                        <---   <----------DOF2         <----------DOF2     <---------TOE1(2)       --------->SPL7  ------>ZmHOX2a(2) ---->TOE2(3)          ------>ZmHOX2a(1)<---------ARR14(2)   <---------ARR11(3)   --------->HSFB2a(2) ---->TOE1(3)   <----------DOF2  <---------GLK1(1)<---------MYB52(1)  <---------MYB52(1)  <----------DOF2 --ALFIN1       <---------DAG2   --------->At4g35610  <---------At4g35610         ------>ZmHOX2a(1)--   ttaagctttgaagaatcactttctcctctctttggagatgccaatctcgtccgttcacctgatgatctctccgttcgtcttctcctcgatcgctataccg  11575600                                                                       ------>ZmHOX2a(2)                                                                 --------->YAB1                                                                <---------YAB1                                                                --------->ICU4              <---------ICU4                                  --------->YAB1              --------->YAB1                                 --------->ICU4             <---------YAB1                  --------->CCA1(2)<---------ICU4            <-----------GT1            <---------ARR11(3)        <---------AHL20(2)     <---------YAB1       <---------AHL20(2)            --------->ARR11(3)        --------->AHL20(2)<---------bZIP60(1)   --------->ATHB12-------           --------->YAB1         <----------DOF2       --------->bZIP60(1)  --------->ICU4   -------          <---------YAB1       <---------ARR11(3)       <---------TGA2(1)    <---------YAB1   <------ ------MYB52(1)                --------->ARR11(3)       --------->TGA2(1)  --------->YAB1    <------- -------->TaMYB80             <---------CCA1(2)      --------->ICU4<---------YAB1 --------->AHL20(2)   gtatatacacatatgatcatcacatgggttttatatctttttaaatgatatggtgatgatgtcatgatgatgatcgatgatgatttatatatacaggttc  11575700                                                                                     ------>NtERF2                                                                                    --------->DEAR3(1)                                                                                   <------NtERF2                                                                                   --------->ATERF1(1)                                                                                  <---------ATERF1(1)                                                                                 <---------DEAR3(1)                                                                                <------NtERF2                                                                              --------->DEAR3(1)                                                                            <---------ATERF1(1)                                                                            ------>NtERF2                                                                           <---------DEAR3(1)                                                                           <---------ANAC46                                                                           --------->DEAR3(1)                                                                          <------NtERF2                                                                          --------->ATERF1(1)                                                                          --------->RAP2.3(1)                                                                         ------>NtERF2 <---------DAG2                                                                         --------->LBD16<----------DOF2                                                                         <---------ATERF1(1)                                                                        <---------RAP2.3(3)                                                   --------->At4g35610  --------->DEAR3(1)                                             <---------ICU4             <---------DEAR3(1)                                             --------->ATHB12           --------->ATERF1(2)                    ------->TEIL            <---------YAB1              <---------ATERF1(2)     <---------CCA1(2)                      --------->ICU4     <---------YAB1 <---------DEAR3(1) -->ARR14(2)     <---------ANAC55(2)  --------->At4g35610 --------->LBD16<---------RAP2.3(1) -->GLK1(2)      --------->ANAC55(2)  <---------At4g35610 <---------At4g35610<------NtERF2 ---ARR14(2)  <---------ARR14(2)   <---------At5g28300    --------->At4g35610--------->ATERF1(1) --GLK1(2)    --------->ARR14(2)  <-----------GT1  <---------At4g35610 <---------LBD16<------NtERF2   tggtttcatatcatcgaatatgtatcaacatggattttacagctccatgattaagcttcccgctgattatactgccggcgtcgtcgtcgccttttatgta  11575800  Previous    Next  AGI:  At1g32170.1    Description:  XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4); hydrolase, acting on glycosyl bonds. Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 30 precursor (XTH30) [Arabidopsis Thaliana] (GB:Q38908;GB:Q8LDA9;GB:Q9FVR2); similar to xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative [Arabidopsis thaliana] (TAIR:AT4G18990.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63333.1); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320); contains InterPro domain Xyloglucan endotransglucosylase/hydrolase (InterP Range:  from: 11575300    to: 11577907    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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