Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                       <-----------HVH21                                                                    --------->WOX13(1)                                                                  <------ZmHOX2a(2)                             <-----------HVH21                   <---------ARR14(2)                            --------->ANAC46                     --------->ARR14(2)                        ------>ZmHOX2a(1)                  --------->ZAT2                --------->ANAC46        ---------->DOF2    <---------ZAT2                           <             ==================HOX2a_HOX2a                --------->ANAC58                      <----             ------>ZmHOX2a(2)     --------->ZAT14        --------->ANAC58           --------->bZIP60(2)  <----------DOF2   <---------SPL7 <---------ZAT14        ------>MYB46(1)    --------------------->WRI1 --DOF2    --------->AGP1  --------->LBD16                ------>MYB83 <---------ALFIN1  --------->ANAC46   gtgtctttattctgatctacgtcgtcctccgagtcactgaagtaaagctcaatagaaaccaagctccgatccatcacttcgttggacacatcagccatct  11528000                                                                                     <----------DOF2                                                                                    --------->MYB52(2)                                                                                <------MYB46(1)                                                                                <------MYB83                                                                          <----------DOF2         ---             --------->ZAT2                                              <---------ANAC46      <-----             <---------At4g35610                                         <---------ANAC58      <-----             <---------ZAT2                                 --------->WRKY38(1)--------->MYB59 <----- -----------RAV1(1)       --------->At4g35610               --------->WRKY12--------->ATHB12<-------- ------DOF2  --------->At4g35610                         <---------ICU4  <---------ANAC58  <-------GAMYB   ttttggggctcttgcagctctcatgctcatctccattgtttctcccatcttcactctcatcgttgcccctctatggcttgtttggttctttgctgttatg  11528100                                                                      <---------GLK1(1)                                                                      --------->GLK1(1)                                                                      <------ZmHOX2a(2)                                                                     <---------ARR14(2)                                                                     <---------AGP1                                                                     --------->AGP1                                                             <---------ANAC55(2)                                                             --------->ANAC55(2)                                                           --------->MYB52(1)                                                       <---------ARR14(2)                                                       <-----------ARR10                                                       --------->ARR14(2)                                                       --------->ARR11(3)                                                       --------->GLK1(2)                                                       <---------ARR11(3)                            <---------ANAC46          <---------CCA1(2)         --------->ZAT14   <----------DOF2     <---------ANAC58               --------->GLK1(1)------>ZmHOX2a(2) ---->TEIL             <---------AtLEC2           --------->ANAC58   --------->ARR11(3)           <-- ----ANAC46            <---------ANAC58           --------->ANAC58   --------->ARR14(2)           <-- ----YAB1             <<<<<<<<<<FUS3           ----------->HVH21     <---------ARR11(3)           <-- ----ANAC55(2)        <<<<<<<<<<ABI3         --------->LBD16<---------LBD16    --------->YAB1   ----- -MYB52(1)     <-----------HVH21           <-----------RAV1(2)      <---------CCA1(2)        --------   tatgtctttttagtagaggtcatttgcatggtggagattaagcgtccaggggacgcaaatcttacggaccagatctctcaagtatagtagtttaaacgta  11528200        <---------ANAC58     <---------ARR14(2)     --------->GLK1(2) -------ANAC46        <---------TOE2(3) -------ANAC58   ----------->GT1            <----------DOF2 -------ANAC58 <-----------RAV1(2)       <-----------GT1             <-----------GT1 -->TEIL<---------ANAC58              <---------AHL20(2) --------->ARR11(3)                      <--- ->ANAC46--------->LBD16        ----------->GT1       --------->AHL20(2)<----------DOF2  --------->TOE2(3)   gcttgagattccgagcatcaggttaatgtattagtagtaatttatactttatagcataaaatcatgtgttttttctttctaagttttcgaaccctaatcg  11528300                                     --------->ANAC58                         --------->MYB52(2)                                     --------->ANAC46                       <--------P        ---------->DOF2              --------->ANAC58              <---------------AGL15       --------->AHL20(2)      ---------->DOF2                     --------------->AGL15       <---------AHL20(2)   --------->TOE2(3)                  --------->ARR14(2)   --------->TOE2(3)    --------->YAB1          <----------DOF2           --------->RAP2.6(3) <---------ZAT6         <---   <---------AHL20(2)   <---------MYB59      <---------MYB52(2)<---------ARR14(2)  <---------ANAC46 ------ANAC46         --------->PCF2 --------->LBD16 --------->MYB52(1)  <---------TOE1(3)   --------   tgtatataataaaagaatgagtcgggcctactttaaagcccgaaacaaataaccaaaacggcccatatacttcttagggttagtttcgtcaaaataccaa  11528400                                                                                     <---------ZAT18                                                                                     --------->ZAT14                                                                                     <---------ZAT14                     --------->ALFIN1                                                --------->ABI4(2)                   <-----------RAV1(1)                                           <---------DEAR3(1)                 <---------ANAC55(1)                                             <---------DREB2C(2)                 <---------ANAC46                                                <---------DEAR4(1)                 <---------ANAC58                                           --------->ZAT14                 <---------ANAC58                                           <---------ZAT14            -------------->OsCBT                      --------->YAB1        <---------ZAT18           <<<<<<<<<<AtSR1                           <---------ATHB12      --------->ALFIN1           --------->LBD16                          ------>MYB46(1)    <---------At5g28300 <---------          <---------ANAC46                          ------>MYB83   <----------DOF2<------MYB83       --------->ARR14(2)  ------------------------>ANAC81        <---------ANAC58<---------DEAR3(2) ------ATHB12<----------DOF2            ---------->DOF2           <---------ANAC58<------MYB46(1) <-- ---->CBF<---------LBD16 *TSS  ---------->DOF2      -------->P<---------MYB52(1) <---------MYB46(3)   tagttccaaattccgcgtttcgtgtgggagagaaaaagaagaaaaagagagtccaaccatatcagtttgctttcacagtggagtcggtgctctctttttt  11528500                                        ------>ZmHOX2a(2)                                       <------ZmHOX2a(2)                                       ===============HOX2a_HOX2a                                      <---------ARR11(3)                                      --------->ARR11(3)                                   <------NtERF2                                  --------->LBD16                                  ------>NtERF2                                 ------>ZmHOX2a(2)                                 <---------LBD16                               <------ZmHOX2a(2)                                 --------->LBD16                               <---------GLK1(1)                                <---------LBD16                                --------->GLK1(1)                               =======================HOX2a_HOX2a             --------->ARR11(3)                              <------ZmHOX2a(2)             --------->YAB1    <---------ARR14(2)                              ========================HOX2a_HOX2a             --------->ARR14(2)                             --------->ARR14(2)             --------->ZAT6    <---------ARR11(3)                             <---------ARR14(2)          --------->WOX13(1)  <------ZmHOX2a(1)                             <-----------ARR10        --------->GLK1(2)<---------YAB1                           <---------ATERF1(1)        <---------ARR14(2)  --------->HSFB2a(2)     ---                          <---------TOE1(2)           <---------ARR11(1)  <---------HSFB2a(2)     ---            <----------DOF2--------->LBD16     <------ZmHOX2a(1)    <---------MYB52(1)          ----- -DOF2  <----------DOF2  <---------LBD16==============HOX2a_HOX2a  --------->TOE2(3)         <------- ---------GT1   <-----------GT1------>ZmHOX2a(2)  <------NtERF2   ----------->GT1     --------->MYB46(3)   tttcttctctctttcttttcacctctcgccggatcccggcgatcttataggaggcaaatctatcagtatcgttattctaggatctctaacaaacaatgaa  11528600                                                       --------->DOF5.7(2)         ==========================HOX2a_HOX2a  <----------DOF2         ================HOX2a_HOX2a            ------>ZmHOX2a(1)        --------->ARR14(2)                     <---------------AGL15    <---------ALFIN1                           --------------->AGL15  ------>NtERF2                               <-----------------AGL1 --------->DEAR3(1)                           ----------------->AGL2           ------->TEIL <---------ALFIN1                             <-----------------AGL3           <---------ARR14(2) --------->ANAC46 ------>ZmHOX2a(1)           ----------------->AGL1           --------->ARR14(2) ------>ANAC58 <---------ATHB12               <-----------------AG            <---------GLK1(2) ------>ANAC58--------->ARR14(2)        --------->TOE2(3)<---------DOF5.7(2)  <---------CCA1(2)  <--- -->TEIL<---------ARR14(2)  <------ZmHOX2a(1) ----------------->AG         --------->LBD16    ------- --ATHB12<------ZmHOX2a(2) <----------ID1  --------->WOX13(1)       <----------DOF2        <---------   tcgccaccacgatcccaatcctttcgatgaggacgaagaaatcgtcaatcctttttcggtaacgttttctctttctccctgaatcttcgatttcttttcg  11528700                                                 ------>ZmHOX2a(2)                                                <------ZmHOX2a(2)                                                <<<<<<<<<GATA-3                                                <<<<<<<<<GATA-1                                                <<<<<<<<<GATA-4                                   <---------MYB46(3)                            ----------->HVH21   <<<<<<<<<GATA-2                           <---------HSFB2a(2)  <---------GLK1(1)                           --------->HSFB2a(2) <---------AGP1  <-----------GT1   <---------ANAC46           <---------ARR11(3) ------MYB52(1)     <---------ANAC58           --------->ARR11(3)             <---------ANAC46     <- --->ID1            <---------ANAC58          <---------CCA1(2)         <---------AHL20(2)         -- -DOF2            <---------ANAC46 --------->MYB52(2)               <---------AHL20(2) ----------->GT1   tttttttctctagttggattttgtgtgttcgcgacggtagtggaatctagatctctcacttgttgagtttttatttagttttgtgcaaatggaaaatagc  11528800                                           ----------->GT1                                           <------MYB83                                   <---------GLK1(1)                                           <---------HSFC1(2)                            <---------ARR11(3)                                           <---------HSFB2a(1)                           ------->TEIL                                           --------->HSFC1(2)                            <---------AGP1                                           <------MYB46(1)                               --------->ARR11(3)                                      --------->ANAC58                      --------->ZAT14                                      --------->ANAC55(2)                   <---------ZAT14                                      --------->ANAC46                     --------->ALFIN1------>ZmHOX2a(2)                                      --------->ANAC58                 <---------At5g28300--------->GLK1(1)                                      <---------ANAC55(2)             <-----------GT1 <---------TOE2(3)       <------ZmHOX2a(1)             <---------LBD16             --------->ARR11(3)--------->GLK1(2) --------ARR14(2)               <---------YAB1<-------TEIL       <---------ARR11(3)--------->ICU4 ------->ARR14(2)            --------->ICU4--------->HSFB2a(1)  --------->YAB1  <---------TOE2(3)   -   agaaactgaggactgagaactgtgtaatgtcattttgattacggaaggttcatttctatttgaaaatgatattaacagtgttgagattatggatctctcg  11528900  Previous    Next  AGI:  At1g32049.1    Description:  unknown pseudogene Range:  from: 11527708    to: 11528187    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g32050.1    Description:  secretory carrier membrane protein (SCAMP) family protein. Identical to Secretory carrier-associated membrane protein 4 (SCAMP4) [Arabidopsis Thaliana] (GB:Q9C6X2); similar to secretory carrier membrane protein (SCAMP) family protein [Arabidopsis thaliana] (TAIR:AT2G20840.1); similar to unknown [Populus trichocarpa] (GB:ABK93338.1); contains InterPro domain SCAMP; (InterPro:IPR007273) Range:  from: 11528425    to: 11531261    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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