Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                             <---------DAG2                                           <----------DOF2                                       --------->LBD16                                      <---------ANAC55(2)                                   <---------ARR14(2)                                   --------->ARR14(2)                                  <---------GLK1(1)                               --------->TOE2(3)  ------>NtERF2                              ----------->GT1     --------->LBD16          --------->YAB1      --------->ANAC46   --------->ANAC46   --------->WRKY18(1)       <---------TOE2(3)  <---------LBD16  <--------ZAP1      --------->ANAC46 --------->ANAC55(2)          --------->ANAC55(1)     --------->GLK1(1) ----AHL20(2)        --------->ANAC58--------------->AtSPL3        ----------->GT1      --------->TOE2(3) ---AHL20(2)         --------->ANAC58--------------->AtSPL8 --------->TOE2(3)          ----------->GT1 -->AHL20(2)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  ----------->GT1<-----------GT1 ---------->DOF2 --AHL20(2)      <-----------GT1  --------->GLK1(1)        <---------ANAC55(2)         <---------ANAC55(2)   tttcggtcaaaaacataattttctcgccataaacgtaaatccgtactttttccgccaaaaaacgtaaactcgtaattttctcgtcaaaaacgtaaatccc  11527300                                              <-----------GT1                                           <---------AHL20(1)                                           --------->AHL20(1)                                  <-----                                           <---------ARR11(3)                                  ------                 ---------->DOF2           --------->ARR11(3)                                  ------                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                         <-----               --------->TOE2(3)        <---------AHL20(2)           --------->ATHB51         <------              <---------ANAC55(2)       --------->AHL20(2)        --------->TOE2(3)           -------       ----------------->AGL1   --------->ZAT18           ----------->GT1<-----------GT1 <---------YAB1       ----------------->AG     <---------ZAT18    --------->AtLEC2  <---------ICU4   --------->ICU4<   taaatttttgccaaaaacgtaaacccctaatttgttcgctaaaaaaatattccatccaaaatgtaaatccataattttctcttcgaaaattatgaattaa  11527400                                                                  <---------ICU4                                                                  -------->ATHB1                                                                  --------->ATHB51                                                                 <---------AHL20(2)                                                                 --------->AHL20(2)                                                              --------->AHL20(2)                        --------->YAB1                        --------->AHL20(1)                     -------->HAHB4                          <---------AHL20(2)                     <---------ICU4                          --------->AHL20(2)                     --------->YAB1                      --------->AHL20(2)                  --------->YAB1                         <---------AHL20(2)                  <---------ICU4                        <---------YAB1                 <---------YAB1                       <--------HAHB4         --------->YAB1----------->GT1                -------->HAHB4        <---------YAB1 <---------YAB1<---------ICU4   --------->ATHB51       --------->AHL20(2)     --------->ATHB51        -------->ATHB1       <---------AHL20(2)     -------->ATHB1          --------->YAB1      --------->YAB1--------->ICU4  --------->ICU4    <---------ICU4 ----AHL20(2)    --------->ICU4     <---------YAB1    <---------AHL20(2)<---------------AGL15 --->AHL20(1)  --------->YAB1 --------->ATHB12       --------->ICU4     --------------->AGL15 --->AHL20(2) --------->ICU4 <---------YAB1          <---------ATHB51  <---------ANAC55(2) ----AHL20(1) <---------YAB1 <---------ATHB51        <---------YAB1 <---------YAB1 ---AHL20(2)--------->YAB1   --------->AHL20(1)    <---------ICU4--------->ICU4 -->AHL20(2)<---------ICU4   <---------AHL20(2) --------->YAB1<---------AHL20(2)                 <--- -----------GT1<---------ICU4--------->ICU4     ----------->GT1  <---------ATHB51          <---------   attttcaattttaataataataataatgaaaattattgattattgtttgatagtaattattaattaaattattacttaaatgagttattcatttaaccat  11527500                                                          <---------AHL20(2)                      <--                                                         --------->AHL20(2)                     -----                                                         <---------AHL20(2)                     <----                                                     --------->AHL20(2)                        ------                            <---------AHL20(2)       --------->AHL20(1)                        ------               --------->AHL20(2)                    <---------AHL20(1)                     <--------               <---------AHL20(2)           --------->MYB46(3)             --------->AHL20(2)  ------ ------ATHB12  --------->AHL20(1)           <---------ATHB12               <---------AHL20(2) <------ --GT1    --------->AHL20(2)--------->AHL20(2)       <---------AHL20(2)<-------TEIL       -----------   tcaatctatcgaataaataaaatgagtttataaattgactaactcaaccattcaatttattaaatagaatgagttcataaattgacttagatgaggtccg  11527600                                                                            --------->LBD16 <---------DAG2                                                           ------>ZmHOX2a(2)    ------ <----------DOF2                    <-----------GT1                       <-----------------------TaNAC69(2) -------ALFIN1                  <---------MYB52(1)                       --------->CCA1(2)     ------ ->NtERF2                    ------>ZmHOX2a(1)                           <------ZmHOX2a(2)     ------ --NtERF2              --------->HSFC1(2)                               <---------ARR11(3)    ------- --->ANAC58            --------->HSFB2a(1)                              --------->ARR14(2)   -------- --->ANAC58            --------->ZAT2   ------>ZmHOX2a(1)               <---------ARR14(2)  --------- -SPL7                 <---------HSFC1(2)            --------->AHL20(2) --------->AGP1     ------>MYB83 --->ANAC46            --------->At4g35610           ----------->TBP   <---------GLK1(1)   ------>MYB46(1) -TEIL                 <---------At4g35610     ---------->ID1        --------->HSFB2a(2)  --------->ANAC46 >ARR10                <---------HSFB2a(1)<----------DOF2            <---------HSFB2a(2) --------->MYB46(3)   ccacttttttaaaaactgggctcgaagcttcctcgttgtttcctcttttgcccctataaatacaaaaacttcgagatccgaagaaaaaaaacccaccaac  11527700                           --------->ZAT14                           <---------ZAT14                           <-------TEIL                                                  --------->ANAC58                           <---------REM1(2)                                   --------->ZAT14                         <---------MYB52(1)                                   --------->ANAC46                        --------->LBD16                                      <---------LBD16 >MYB46(1)            <---------LBD16                 <---------DEAR3(1)    ------>ZmHOX2a(1) ------>CBF         <---------SPL7                   <---------------------WRI1--------->LBD16 >MYB83 *TSS     <---------MYB52(1)                 ------>NtERF2      --------->KAN4(2) --------->ANAC58 ---->RAV1(1)   --------->LBD16   <---------ZAT18  <---------DEAR3(1) <---------ICU4<---------ZAT14 ->AtMYB61    <---------LBD16 --------->ANAC46    <---------LBD16    <---------YAB1 <---------ZAT18 >MYB46(3)   ------>ZmHOX2a(1)--------------->AtSPL8--------->LBD16--------->YAB1   --------->ZAT14   aatatagatgtcttcctccggtagtccggtacacagtaccctaatttctaactccggcgatgaaaacactgatcattcctccgcagtacacaagcttatc  11527800                                                                             --------->ANAC58                                                                         <-----------HVH21                                                                        ------>ZmHOX2a(2)                                                                        =======================HOX2a_HOX2a               ------>NtERF2                               --------->AtMYB61 --------->ANAC46             <------NtERF2                                --------->MYB46(3) --------->ANAC58             --------->ATERF1(1)  <------ZmHOX2a(2)--------->At4g35610 <------ZmHOX2a(2)             --------->RAP2.3(1)  =====================HOX2a_HOX2a     ========================HOX2a_HOX2a            <---------ATERF1(1)  <---------ARR11(3)--------->ZAT2     <---------ARR11(3)            <---------RAP2.3(1) --------->At4g35610<---------At4g35610--------->ARR11(3)           <---------DEAR3(1)   <---------At4g35610<---------ZAT2     <---------ARR14(2)           --------->ALFIN1  <---------At4g35610===============================HOX2a_HOX2a          <---------LBD16 <---------At4g35610   ==============================HOX2a_HOX2a   <--------         ------->GAMYB <---------MYB52(1)       ------>ZmHOX2a(1)     --------->ARR14(2)------>ZmHOX2a(1)        <---------DEAR3(1)--------->At4g35610  --------->TOE2(3)  <---------ZAT14   <---------ARR14(2)      --------->MYB52(1) --------->MYB52(2)<---------GLK1(1)      --------->ZAT14   --------->ARR14(2)    <---------YAB1--------->MYB52(1)       --------->GLK1(1)      <---------At4g35610   =============   gctgttatcaacggcggagccatcggtttgctgcagatcacagagaattcctcagcttcaaccaatactgcagatcgtcaagccactatcctctctttct  11527900                                                                     <-----------HVH21                                                                    --------->WOX13(1)                             <-----------HVH21                    <------ZmHOX2a(2)                            --------->ANAC46                     --------->ARR14(2)                        ------>ZmHOX2a(1)                        <---------ARR14(2)                --------->ANAC46                           <---------ZAT2             ==================HOX2a_HOX2a                 --------->ZAT2                           <             ------>ZmHOX2a(2)          ---------->DOF2   --------->ANAC58                      <----  <----------DOF2   <---------SPL7 --------->ZAT14        ------>MYB83 <---------ALFIN1  --------->ANAC46 --DOF2    --------->AGP1  --------->LBD16                --------->ANAC58           --------->bZIP60(2) ===================HOX2a_HOX2a    <---------ZAT14        ------>MYB46(1)    --------------------->WRI1   gtgtctttattctgatctacgtcgtcctccgagtcactgaagtaaagctcaatagaaaccaagctccgatccatcacttcgttggacacatcagccatct  11528000                                                                                     <----------DOF2                                                                                    --------->MYB52(2)                                                                                <------MYB46(1)                                                                                <------MYB83                                                                          <----------DOF2         ---             <---------ZAT2                                              <---------ANAC58      <-----             --------->ZAT2                                              <---------ANAC46      <-----             --------->At4g35610                            --------->WRKY12--------->ATHB12<-------- -----------RAV1(1)       --------->At4g35610               --------->WRKY38(1)--------->MYB59 <----- ------DOF2  <---------At4g35610                         <---------ICU4  <---------ANAC58  <-------GAMYB   ttttggggctcttgcagctctcatgctcatctccattgtttctcccatcttcactctcatcgttgcccctctatggcttgtttggttctttgctgttatg  11528100                                                                      --------->GLK1(1)                                                                      <---------GLK1(1)                                                                      <------ZmHOX2a(2)                                                                     --------->ARR11(3)                                                                     --------->AGP1                                                                     <---------ARR11(3)                                                             <---------ANAC55(2)                                                             --------->ANAC55(2)                                                           --------->MYB52(1)                                                       <---------ARR11(3)                                                       <---------ARR14(2)                                                       --------->ARR14(2)                                                       --------->ARR11(3)                                                       <-----------ARR10                                                       --------->GLK1(2)                            <---------ANAC46          --------->GLK1(1)         --------->ZAT14   <----------DOF2     <---------AtLEC2               <---------CCA1(2)------>ZmHOX2a(2) ---->TEIL             <---------ANAC58           --------->ANAC58   <---------AGP1               <-- ----YAB1              <---------ANAC58           --------->ANAC58   <---------ARR14(2)           <-- ----ANAC55(2)        <<<<<<<<<<ABI3           ----------->HVH21     --------->ARR14(2)           <-- -MYB52(1)            <<<<<<<<<<FUS3         --------->LBD16<---------LBD16    --------->YAB1   ----- ----ANAC46    <-----------HVH21           <-----------RAV1(2)      <---------CCA1(2)        --------   tatgtctttttagtagaggtcatttgcatggtggagattaagcgtccaggggacgcaaatcttacggaccagatctctcaagtatagtagtttaaacgta  11528200  Previous    Next  AGI:  At1g32049.1    Description:  unknown pseudogene Range:  from: 11527708    to: 11528187    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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