Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                       ------->GAMYB           --------->ZAT18                                                                   ========           <---------ZAT14                                                                   -------- --------AHL20(2)----------->HVH21               ----------->HVH21                       --------->ANAC46 ->TOE1(3) <---------ZAT18                     <---------ANAC55(2)                       --------->ANAC58 ->YAB1   <---------ANAC58   ----------->GT1   --------->ANAC55(2)                       --------->ANAC58 ->TOE2(3)<---------ANAC58   <---------ZAT6    ----------->GT1 <---------YAB1     <---------GLK1(1)   aatatttgtatagcgcgctgtaaccgaggcagtgtaattcaaattgaaaacgtgacaagtcgaatattgttgaaacaactttggaaattccaagtaaaag  11520500                           --------->ALFIN1                          --------->TOE1(2)                         <---------O2                         <---------TGA1a                         <---------ANAC55(1)                         <---------bZIP60(1)                         <---------ANAC46                         <---------ANAC58                         <---------ANAC58                  <----------DOF2                         =============================================bZIP_DOF                         <---------bZIP60(2)     <---------ALFIN1             <---------At4g35610                         --------->TGA1a       <------ZmHOX2a(2)              --------->At4g35610                         --------->O2         <---------ARR14(2)            <--------P             <-                        ----------->STF1      --------->ARR11(3)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                      ----------->TGA1        --------->AGP1          <---------ANAC46  <---------At4g35610              <---------HSFB2a(2)             <---------ARR11(3) --------->ATHB12       --------->At4g35610              --------->HSFB2a(2)      --------->CCA1(2)   <---------DAG2 --------->ALFIN1         -- ==================================bZIP_DOF   --------->ARR14(2)<---------YAB1<---------ZAT2       -- -->DOF2      <---------LBD16       ----------->GT1--------->ANAC46<---------WOX13(1)   ----------->RAV1(2)   acacttaaaaacacttctcggaaaatgacgtgggagtatggatatacagatccactccctccttttttgattgggggggtagctgaactcatctgaagat  11520600              <----------DOF2                                                                 <------          ------->TEIL          --------->bZIP60(2)                                           <------        <---------SPL7     --------->ANAC58                                                   <------       --------->ANAC55(2) --------->ANAC58                                                ----------       --------->ANAC46 <------ZmHOX2a(2)                                                  ----------      --------------->AtSPL3   ------>NtERF2                                             <---------AtLEC2      --------------->AtSPL8  <---------ALFIN1                                          <-------TEIL    <---------ETT(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                         <---------ANAC58 --------At4g35610 <---------LBD16                                                   <---------ANAC58 ------->At4g35610<---------LBD16                                                   <---------TOE1(2) ------->ZAT2<---------DAG2--------->ANAC46    <-------TEIL                    <---------AHL20(2)   <   gagctgtctacgtacccttttcagggatcaagccacctcatagttcaagtccatacataccttcgggcttagttatagtattttcttaggtgcatgacgt  11520700       --------->ANAC55(2)     ------>ZmHOX2a(2)    --------->GLK1(1)    <---------GLK1(1)                                   <---------TOE1(2)          ------>MYB46(1)    <------ZmHOX2a(2)                                   --------->SPL7             ------>MYB83   --------->ARR14(2)                                 <---------SPL7             --------->AtMYB61   <---------ARR11(3)                                 ----------->HVH21         <---------HSFC1(2)   <---------ARR14(2)                            <---------DEAR3(2)             <---------HSFB2a(1)   <---------ARR14(3)                        ======================================MYC_MYB   --------->ARR14(3)                        <---------TGA1a                    --------->HSFB2a(1)   --------->ARR11(3)               --------->ZAT2   --------->ETT(1)           --------->HSFC1(2)   <---------AGP1                   <---------ZAT2 <-----------HVH21           <---------ARR11(3)   <  <------ZmHOX2a(1)              <---------ANAC58--------->MYB55(2)       <--------P                <  <---------GLK1(2)      --------->YAB1      --------->TGA1a--------->GLK1(2)  <-----------ARR10    - ---bZIP60(2)   <----------DOF2  xxxxxxxxxxxxxxxx>smallRNA(i)           <---------ANAC55(2)         - ---ANAC58      =======================================bZIP_DOF        --------->MYB59            <-- ---ANAC58--------->ARR14(2)     <---------ANAC58<---------MYB46(3)   <-----------RAV1(2)     ------- ->TGA1<---------ANAC55(2) <-----------RAV1(1)<-----------HVH21     --------->GLK1(2)    <---------MYB52(1) ->HVH21  <---------ARR14(2)    <------NtERF2<---------O2  <---------ARR14(2)  --------->ARR11(3)---- ---------TOE1(2)       <---------ATHB12     --------->O2  <---------GLK1(2)  <------ZmHOX2a(1) <----   tgcaggatctcgtaactgctttgccattcatgttggcgagctcgtagacgtcgggtcggacgattctgaaaatcaggtaaggaccttcccagttagcccc  11520800         <---------ANAC58         <---------ANAC58        <---------TOE1(2)       ------>ZmHOX2a(1)      --------->TOE2(2)     <---------ANAC58     <---------ANAC58  <----------DOF2 ---------ZAT2 ---------At4g35610 -------->At4g35610 -------->ZAT2 -------ALFIN1       <-----------GT1                                                                < -->DEAR3(1)     <----------DOF2                                                                  --- ----->LBD16    <---------DAG2       <---------YAB1              --------->YAB1          --------->HSFB2a(2) -----ALFIN1--------->WRKY38(1)      --------->ICU4     *TSS------------>CBF             <---------HSFB2a(2)   ccagctttcctgcgttcaccttttagctattctcgagtaatgactgtggaagtcgaaactcgcacaatcgaaatcggtcttagggttctctcgagaaatg  11520900                                          <-----------RAV1(2)                         --------->YAB1              ---------->DOF2          --------->MYB46(3)             ---------->DOF2<---------ATHB12      ------------>CBF               <-----------GT1         --------->ATHB12----------->GT1 ----------DOF2      ----------->RAV1(1)----------->RAV1(1) <---------YAB1<------ZmHOX2a(1) ---->TEIL --------->TOE2(3)     --------->YAB1             <---------AHL20(2)     <-----------GT1 --   aactttgtgacaatctcaaagaacaacataatcgataataaaccacagatggtgtttttgatattattgatgaaaaggattgttttaatcatacaagtgt  11521000                                                                  xxxxxxxxxxxxxxxx>smallRNA(i)                                                                <---------ANAC46             ---------->DOF2            <----------DOF2         <---------ANAC58        ---------->DOF2         <-----------HVH21               <---------ANAC58---------->ID1 --------->GT1--------->DAG2 ---------->DOF2         xxxxxxxxxxxxxxxx>smallRNA(i)     <---------MYB52(1)   ttagaaaatagaaagaaaagtgtctagccttcaaagtcagagcttttggattgtctgaaattgagagcgtgtttttttttttgtctcccttaagcctaat  11521100                                                                                              <------                                                                                        <---------ICU4                                                                                       <---------AHL20(2)                                                                                       --------->AHL20(2)                                                                                       --------->ICU4                                                                                       <---------ATHB51                                                                                 ----------->GT1                                                                                 --------->LBD16                                                                                --------->HSFB2a(2)                                                                                <---------HSFB2a(2)                                                                              <------ZmHOX2a(2)                   --------->ARR11(3)                  --------->GLK1(1)     <---------ARR14(2)                   <---------ARR11(3)                  <---------GLK1(1)     --------->ARR14(2)        <----------DOF2                     --------->GLK1(2)   <-----------GT1------>ZmHOX2a(2)        <---------DAG2                      <---------YAB1      <xxxxxxxxxxxxxxxxsmallRNA(i)  <------   ccttgagacgctttatatagagttcttaaactgtctctctagcgatattcttggaagaattccatttatccctaagtcggatccagaaaataattagctt  11521200                                                               <---------ARR11(3)                                                               --------->ARR11(3)                                                             <---------HSFB2a(1)                                                             --------->HSFC1(2)                                                        --------->HSFB2a(2)                                                        ------>ZmHOX2a(1)                                                        <---------HSFB2a(2)                                                    --------->ARR11(3)                                                    --------->ARR14(2)   <---------YAB1            <-                         <----------DOF2            <---------ARR11(3)  <---------ARR11(3)         xx         --------->TOE2(3)                          <---------ARR14(2)  --------->ARR11(3)         -- ------->TEIL    <---------LBD16              <-----------GT1--------->HSFB2a(1)                   == ---ANAC58   <---------YAB1              --------->ATHB12    <---------HSFC1(2)                   --- ---ANAC58------>ZmHOX2a(1)             ------>ZmHOX2a(1)  ---------->DOF2           --------->GLK1(2)   atggatgtattccttattcttcggagacttttgaaaaacttcctgatttgacaatatcctcgaaagttctccaatatcatttctgagactcttggaaatg  11521300                                                                                          <---------At4g35610                                                                                          --------->O2                                                                                          <---------ANAC55(2)                                                                                          --------->TGA1a                                                                                          ===========                                                                                          <---------O2         =================HOX2a_HOX2a                                                     --------->At4g35610         --------->LBD16                                                                  --------->ANAC55(2)         ------>ZmHOX2a(1)    --------->ATHB12                                            -----------       <---------LBD16    ------->TEIL                                               ----------->HVH21  <---------MYB52(1)      <---------TOE1(3)          <---------ANAC58           <---------TOE1(3) --------->LBD16    <----------DOF2                  <---------ANAC58          <---------DOF5.7(2) --------LBD16     ------>ZmHOX2a(2)     <---------HSFB2a(2)                  <---------WRKY38(1) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     --------->HSFB2a(2)          <------ZmHOX2a(1) <-----------RAV1(2) ---->ZmHOX2a(2) <---------ARR11(3)  <---------GLK1(1)           <----------DOF2------->TEIL--------- ===============HOX2a_HOX2a --------->TOE2(3)    <----------DOF2 ===================================bZIP_DOF ------>ARR14(1) --------->ARR11(3)  --------->GLK1(1)     <---------GLK1(2) ----------->HVH21   <---   atccggttttcctgaaaatgatcttttgaacgttattggatttctacaagtctttgcttccgattttctttaggactcggtgaacgtttgacaggtgact  11521400  Previous    Next  AGI:  At1g32045.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 5.7e-07 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family) Range:  from: 11520669    to: 11520856    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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