Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                      --------->YAB1                                  --------->TOE2(3) <---------ICU4                                  --------->TOE1(3) --------->ATHB12                                 <---------ANAC55(2)-------->ATHB1                                 <---------ANAC46  <---------ATHB12             <------ZmHOX2a(2)                            <---------ICU4         <---------YAB1              <---------ARR11(3)                     --------->ANAC46              --------->ICU4              --------->ARR11(3)                    --------->LBD16--------->DOF5.7(2)                        --------->YAB1                    ------>ZmHOX2a(1)<---------DOF5.7(2)                 <-------TEIL                    --------->HSFB2a(2)          --------->YAB1         --------->CCA1(2) ---------->GT1     <---------HSFB2a(2)         ------------>ATHB5 ---------->DOF2          <--------   cattgtaaaaacacaatgcttcctcgaaactcattacgttaacataccctctaatcattgtattgaaatcaaaggtacaaggatcatctatgcctctgaa  11463400        <---------ANAC58        <---------ANAC46        --------->ANAC55(2)        <---------ANAC55(2)                                      <---------ANAC46        <---------ANAC58                                       ------>NtERF2       <-------TEIL                                           <---------ATERF1(2)    --------->HSFC1(2)                                        --------->ATERF1(2)    <---------ZAT2                                 --------->HSFB2a(2)    <---------At4g35610                           <---------ANAC58    <---------HSFC1(2)                      <----------DOF2 --------->ZAT2    --------->ZAT2                        --------->ZAT18   <---------At4g35610    --------->At4g35610                   <---------ZAT18   --------->At4g35610    --------->HSFB2a(1)           --------->LBD16 <---------ANAC58                              <----    <---------HSFB2a(1)          --------->LBD16  <---------ANAC46                  <----------ID1 ---------AGL3       --------->ZAT14    <---------At4g35610 <---------ZAT2   >>>>>>>>>TBF1      <----   tatggaagctgcgtaattcatactgttctcccatcccgagtgagcgcattttgcgagaacgctgctggctgagaatgaagaagaatagaacaaacttagc  11463500          <---------ANAC46          <---------ANAC58          <---------ANAC58    --------->ARR14(2)    <---------ARR14(2)    ------->TEIL    <---------ANAC58    --------->GLK1(2)             <-----------RAV1(1)                                   <---------MYB46(3) -----ANAC58        <---------ANAC46                   ----------->GT1    <----------DOF2 -----ANAC58        <---------ANAC58        <---------CCA1(2)<-----------GT1       ---------->DOF2   ttgatgaatctggcgtgaacttgcttgaactcgtctatgttgtggcatctcttcaagaggtataaacattcttgctctttccctccaaagttgttgactt  11463600                         --------->ANAC58           <---------ANAC46                     <---------HSFB2a(2)            <---------ANAC58                     --------->HSFB2a(2)            <---------ANAC58       ----------->GT1   --------->ANAC58         ------>NtERF2     ------>ZmHOX2a(1)     <---------YAB1  <---------HSFC1(1)<---------ZAT14         ------>ZmHOX2a(1)<---------TOE2(3)  <-   ctgggttatgagttaaatcgtctctagaagccaatagagactgtagaattggtgccttgatcatcctctcctcataaccattaagaaactagggattttg  11463700                              <---------YAB1                            --------->YAB1                  --------->HSFB2a(2)                 <---------LBD16                                                              -------               --------->GLK1(2)            --------->CCA1(2)                               <--------        ----------->GT1    <---------YAB1  <---------ARR11(3)                          --------->ARR11(3)   --------->LBD16<---------HSFB2a(2)      --------->ARR11(1)           ------->TEIL   <---------GLK1(2) --------SPL7 <---------GLK1(2)--------->AHL20(2)       <---------AHL20(2)             <---------ARR11(3)   gtgtccgaaaatgtcaaattctggaatctatgattatataagaaagatttgaaagtttttaatgagggtttttgaatctcatccctcgagattttcatgg  11463800                              --------->GLK1(2)                            <---------HSFC1(2)                                   <---------GLK1(2)                            --------->HSFC1(2)                         <---------ANAC46                ---------->DOF2                                        <---------ANAC58            --------->ANAC58--------->HSFB2a(1)                        <---------ANAC58     --------->ANAC46      <---------TOE1(3)       <---------ZAT6    --------->ZAT18 -->AtLEC2  --------->ANAC58*TSS <---------YAB1<---------YAB1       --------->ALFIN1<-----------GT1 -AtLEC2----------->RAV1(1)<---------TOE2(3)<---------YAB1  ---------->DOF2 <----------DOF2  --------   aaaatatgagccacaagtaaaagtatttgaaggttctgataagtttgtgattagtgagagagaaaagagagtggggtgctttggattttctctccatgct  11463900                                                                     <---------ARR14(2)                                                                     --------->ARR14(2)               <---------ATERF1(1)                                --------->MYB59       <---------MYB46(3)         <-------TEIL                  --------->ARR14(2)       --------->MYB55(2) <------------CBF                      <---------MYB52(1)     <---------At4g35610<---------YAB1                          <---------ARR14(2)               ----     <-------GAMYB   ------>ZmHOX2a(1)                      <---------LBD16                    ------    --------->MYB52(2) --------->AHL20(2)           ----------->GT1<------MYB83               ------- <-----------HVH21  --------->TOE2(3)               <---------MYB46(3)             <------ZmHOX2a(2) ->AtLEC2     --------->PCF2  <---------TOE2(3)    --------->ALFIN1<------MYB46(1) ==================   atgtgtcagttgttgggaccctccttaaaattgagattcaaacacgatttcaagtggttcaatccggttcggttcttctaaaccgatctaatcgaaacat  11464000                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                              <------ZmHOX2a(1)                                                                                            <--------                                                                                       --------->ATHB51                                                                                       <---------ICU4                                                                                       <--------ATHB1           <---------LBD16                                                             -------->HAHB4         ----------->HVH21                                                             --------->ATHB12      <------ZmHOX2a(1)                                                               --------->ICU4 ----->AHL20(2)                                                                       <---------AHL20(2) --->TOE2(3)<---------ANAC46                                       --------->ANAC46   <---------ATHB51 -->YAB1<-----------HVH21                   <----------DOF2   <---------At4g35610     --------->AHL20(2) ============HOX2a_HOX2a       --------->AtMYB61              --------->At4g35610----------->GT1-----   aaattggaggagtcacgggcaagtagtcggaaaccaaaacaggtttcttttgacaaatgaagtcttctcacaaaactatagaactgaaataattgaggat  11464100                                                      <---------ICU4                                                     <---------YAB1                                                   <---------ICU4                                                   --------->YAB1                                            <------MYB46(1) <------ZmHOX2a(1)                          <------MYB83                                  <---------YAB1 ----ARR14(2)                           <-----------RAV1(1)                               <---------TOE2(3) --->ARR11(3)                         --------->CCA1(2)                                <---------ATHB51 --->ARR14(2)                        --------->ARR11(3)                                --------->ICU4 -TOE2(3)  ---------->DOF2           <---------ARR11(3) <---------YAB1         --------->CCA1(2)   <- ---->CCA1(2)              ----------->GT1  <---------MYB46(3)                <---------ARR11(3)  ---   ataggaattttgtgaaagcgttttacaaatagtgaaatagatatgttggtgaatcatcatttttgaagtgagaataacaagataccaaaattatggtatc  11464200                                                                             <---------AHL20(2)                                                                            --------->AHL20(2)                                                                           <---------MYB52(1)                                                                        <------NtERF2                                                                      --------->ETT(2)        --------->GLK1(1)                                             --------->ANAC58        <---------GLK1(1)                                             --------->ANAC58       --------->ARR14(2)                                           <---------PCF2       <---------ARR14(2)                       <---------At4g35610<------MYB46(1)              <----    <---------ANAC55(2)                        ----------->RAV1(1) <------MYB83 <---------ICU4  <----   <---------LBD16                    <-------TEIL                --------->MYB55(2)      <---------- <---------ATHB12            <----------DOF2  <---------WRKY38(1) <---------AtMYB61       --------->YAB1 --------ICU4              ---------->ID1    <<<<<<<<<WRKY6       <---------MYB46(3)   <---------ICU4 --->ZmHOX2a(1)           <-----------GT1  --------->YAB1        --------->ALFIN1  <-----------GT1   ctaatcacggatatgtttataagttgtttttctttttgggttcaatagtcaacagataatagacagggtgggtcgccattaatttttactaattacaact  11464300  Previous    Next  AGI:  At1g31920.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63312.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN70294.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 11461835    to: 11463828    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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