Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                       --------->At5g28300                                                                    ----------->GT1                                                                    <---------ZAT6                                                                <---------ARR14(2)                                                               <---------GLK1(1)                                                               --------->CCA1(2)                                                               <----------TaMYB80                                                               --------->GLK1(1)                                                              <---------ARR11(3)                                                              <---------ARR14(2)                                                              --------->ARR14(2)               ------                                                             <------ZmHOX2a(1)       --------->ANAC46                                                           <---------TOE2(3)         --------->ANAC58                                                          <-----------RAV1(2)        --------->ANAC58       ----------->RAV1(1)        --------->DAG2    ----------------->AGL1          ------->GAMYB ------>DOF2--------->AHL20(2)   ---------->DOF2    ----------------->AG           <---------ALFIN1 >YAB1--------->ANAC46    --------->AHL20(2)        <-----------------AGL1       ----------->RAV1(1)   aaagctcaacaccataaatttgaacaaataaaacaaaaagcatcaaactttgctaccgattcaggatatactgtaaattagagcaacacccatctaagaa  11423600                                 <---------ANAC46                                <------NtERF2                                <---------At4g35610                                <---------ZAT2                                --------->At4g35610                               <---------MYB46(3)                               <---------DEAR3(2)                               <---------ERF1                               <---------ATERF1(1)                               ------>NtERF2                               <---------RAP2.3(1)                              <---------RAP2.3(3)                              <---------DEAR3(1)                              <---------RAP2.3(2)                          <---------At5g28300                         --------->MYB52(1)                 ----------->HVH21              --------->ARR14(2)<-------GAMYB              <---------ARR14(2)--------->ATERF1(1)             <------ZmHOX2a(1)<---------RAP2.6(2)      <---------TOE2(3)                  --------->AHL20(2)           <---------TOE1(2)------->GAMYB     ----------->GT1                     --------->HSFB2a(1)     ----------->HVH21   <-----------GT1     --------->ALFIN1    *TSS             --------->HSFC1(2) ---->DOF2 <---------TOE2(2)<---------RAP2.3(1)        <---------TOE1(3)          <---------HSFB2a(1)   agaaactatgacgcaggatttgacatttaacggcggctgatacaagagtggagaattagggttttaagagaagagaagagaagagggttccattaaatac  11423700                                                                                               ------                                                                                               <-----                                                                                               <-----                                                                                              ------>NtERF2                                                                                              <------                                                                                              <------                                                                                              <------                                                                                              <------                                                                                             <-------                        ----------->HVH21                                                    <-------                        --------->WRKY38(1)                                                  <-------                        --------->WRKY12                                             ------>ZmHOX2a(1)                      --------->At4g35610                <---------LBD16         --------->ARR14(2)                 <------------CBF---------->DOF2       <-----------GT1           <---------ARR14(2)            --------->WOX13(1)  <---------ATHB12     <---------AHL20(2)        --------->LBD16<------          ------------>CBF  ------------>CBF     <---------AHL20(2)          <---------LBD16 <-------        --------->YAB1<---------At4g35610   <---------ZAT6 --------->LBD16---------->DOF2 --------->ANAC46   agaaatgtattcatcaatctattgggctgacccaataaagcccatagtgttttaatttatccgggtcgagttgcgataaaccgggtccttaaacggcggc  11423800       --------->ICU4     --------->ATHB12  --------->ANAC55(2)  <---------ANAC46                    <-----------HVH21  <---------ANAC55(2)                =================bZIP_DOF --->ATERF1(1)                       =================bZIP_DOF ----At4g35610                       --------->TGA1a -NtERF2                             <---------DEAR3(1)              <---------ZAT18               <- ---DEAR3(2)                         <---------TGA1a                 --------->ZAT14               <- ---ATERF1(1)                        <---------bZIP60(2)           <---------ATERF1(1)             <- ---MYB46(3)                       <------ZmHOX2a(1) <---------AHL20(2)                            <- ---RAP2.3(1)                    <---------TOE2(3) ----------->TBP <---------SPL7                 <-- --RAP2.6(2)              <---------TOE2(3)  --------->REM1(1)     <---------RAP2.6(3)        ------- --ANAC46                 <---------TOE1(3)<----------DOF2        --------->RAP2.6(2)      <---------ANAC46 --RAP2.3(2)       <---------TOE1(3) <---------bZIP60(1)          --------->DEAR3(1)       <---------ANAC58 ---ERF1 ----------->GT1 <-----------GT1 <---------DEAR3(2)      --------->ATERF1(1)    <----------DOF2 --DEAR3(1)        <---------TOE2(3) --------->bZIP60(1)   <------------CBF---------->DOF2 <---------ANAC58   tactacgtgattagtaaaattagggtttaacgattaaggacgtcgcttcaactatataatcaattgggccgtccactagaagcccatgctctttcgtaag  11423900                                                                        --------->ARR14(2)                                                                        <---------ARR14(2) <---------ARR14(2)                                                     --------->GLK1(2) --------->ARR14(2)                         <-----------GT1            <---------GLK1(1) --------DEAR3(2)                      <---------ANAC46                --------->GLK1(1) --------MYB46(3)                      <---------ANAC58            ----------->GT1 -----MYB83                            <---------ANAC58     <---------LBD16                   <------ -----MYB46(1)--------->LBD16 <---------ARR14(2)            <---------ANAC46              <----------DOF2 -------DEAR3(1) ------------>CBF   <--------P<-----------GT1--------->LBD16              <---------DAG2 -->SPL7    <---------LBD16   --------->ARR14(2)           <---------LBD16             <-----------GT1   tcggttcgggttataccgggtcaatttagacaaatcgggttgcgtttttcactctgtttttcgcgggaatgggaaatctgtgaaacatgttacttttttc  11424000                                      --------->GLK1(1)                                     --------->ARR14(2)                                     <-----------ARR10                                     <---------GLK1(2)                                <---------ANAC58                                 --------->LBD16                               <---------TOE2(2)                         <-----------GT1                                    <---------O2                      --------->ARR11(3)                                    <---------ANAC46                      <---------GLK1(2)                                     <---------TGA1a                --------->ANAC46 <---------LBD16                            --------->TGA1a         -                <---------ANAC55(2)  <---------ARR14(2)              --------->ZAT14  <---------ANAC58                --------->ANAC55(2)--------->LBD16              ======================bZIP_DOF   ----             <---------ARR14(2) --------->LBD16                 <----------DOF2<---------TOE1(2) <---      <----------DOF2 <---------ARR11(3)                 --------->At4g35610--------->O2    <-------- -----GT1    --------->ARR14(2)<---------LBD16           <---------At4g35610=========================   ttcatcgtctttgcaattacgcgagattttcttcccgcggattttctctgtgttcgtgaagctgaactttctgaactctcgtgggttttcgtctgattct  11424100              --------->ATERF1(2)             <------NtERF2            <---------ATERF1(1)            ------>NtERF2            --------->ABI4(1)           --------->DEAR3(1)           --------->ATERF1(2)           <---------ATERF1(2)           --------->RAP2.3(3)           --------->RAP2.3(2)           <---------DEAR3(1)          --------->RAP2.3(1)          --------->ERF1          --------->DEAR4(2)    --------->YAB1          --------->ATERF1(1)  <---------ATHB12        --------->ANAC46  --------->ANAC58    --------->DOF5.7(2)                                   <      <---------ATERF1(1) --------->ANAC58   --------->TOE2(3)                                      - --------->DOF2<---------DEAR3(2)---------->DOF2                                        ------->GAMYB ----->At4g35610 <---------CCA1(2)           <----------DOF2                           <---------MYB52(2) ------At4g35610<---------MYB52(1)           --------->TOE1(3)      --------->ETT(2)   --------->ANAC58 -GLK1(2)<---------ATERF1(1) --------->WOX13(1)                     <---------ETT(2)   --------->ANAC58 ==========bZIP_DOF     ---------->DOF2----------->GT1    <---------GLK1(2)    --------->ARR14(2)   -   gctaaagccctcgccgccggtatctctaaagcaatcaaagaaggaaactttaacttgttagattcttctgtctacggttcaaatttgcaacgaaacgaga  11424200                                                                                ------>ZmHOX2a(2)                                                                                --------->HSFB2a(1)                                                                                <---------HSFC1(2)                                                                                --------->HSFC1(2)                                                                                <---------HSFB2a(1)                                                                               <------ZmHOX2a(2)                                                                              --------->ARR14(2)                                                                              <---------ARR14(2)                                                                              --------->ARR11(3)                                                                              <---------ARR11(3)                                                                         ---------->DOF2                                                                      --------->HSFB2a(2)                                                                      <---------HSFB2a(2)                                                                     <---------LBD16                                                                   =================HOX2a_HOX2a                                                                   ------>ZmHOX2a(2)                                                                   ======================HOX2a_HOX2a                                                                  --------->GLK1(1)                                                                  <---------GLK1(1)                                                                  <------ZmHOX2a(2)         ------>ZmHOX2a(1)                                        =======================HOX2a_HOX2a    <------MYB83                                                  ==================HOX2a_HOX2a    <------MYB46(1)                       <----------DOF2        --------->ARR11(3)   --------->MYB59                --------->ARR14(2)            <---------GLK1(1) =================== ---------ARR14(2)           --------->ANAC58                   --------->GLK1(1) ------>ZmHOX2a(1) -------->ARR14(2)      --------->YAB1<---------ZAT18         <------NtERF2  <------ZmHOX2a(1) ------>TEIL<----------DOF2  --------->ANAC58     <----------DOF2<---------ARR11(3)  <----------DOF2   cgaatttggtccttctttcgcttgaatcagaacccaattctgcgcttaagtactttcgatgggcagagatctctggaaaggatccttctttctataccat  11424300                                                                    --------->TOE1(2)                                                                  <---------ATHB12                                                                 ------>MYB83                                         --------->DAG2          ------>MYB46(1)                       --------->HSFB2a(1)               <---------ICU4       --------->GLK1(1)                       <---------HSFB2a(1)  --------->ALFIN1   --------->MYB46(3)            ------>ZmHOX2a(2)         <---------ARR14(2) --------->YAB1       <---------GLK1(1) ==================HOX2a_HOX2a<-----------RAV1(1)       --------->ICU4      <------ZmHOX2a(1)   tgctcatgttttgatccgaaatgggatgttcgatgttgcagataaggtgttcgatgaaatgatcaccaatcgtgggaaggatttcaacgttctgggttcg  11424400                                                                   <---------WOX13(1)                                                                   <--------P                                                                 ----------->GT1                                                                <---------YAB1                 ------                                                                <---------AtMYB61              <-----          --------->ATHB12                               --------->CCA1(2)           <---------CCA1(1)        <-----------HVH21                               --------->ARR11(1)           <---------RVE1(1)       <------MYB46(1)                                  <---------ARR14(2)          --------->ARR11(3)       <------MYB83                                     --------->ARR14(2)          <---------ARR11(3)      --------->MYB59  <---------YAB1                   --------->ARR11(3)    <---------LBD16 <------ <---------TOE2(3)<---------At4g35610              <---------REM1(1)     --------->DAG2    <---------ANAC46   attagggataggtcattggatgctgatgtttgcaagtttttgatggaatgttgttgtagatatggtatggttgataaggctctggagatatttgtgtata  11424500  Previous    Next  AGI:  At1g31835.1    Description:  unknown protein Range:  from: 11423040    to: 11423665    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g31840.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G12300.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66713.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 11423987    to: 11426059    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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