Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                        --------->YAB1                                                                                 <---------YAB1  <---------ANAC58    --------->ZAT18                                           --------->TOE2(3)  <---------ANAC58    <-------TEIL             --------->ZAT6                 --------->GLK1(2)   <xx >YAB1   ------>ZmHOX2a(1)          --------->MYB46(3)                       <---------GLK1(2)   <xxx   cgaggcatgtccttcgatacaaggtgcaataaacaacaacaactcaataacacaaacaaactcaagtattcaaaaatgagattcttaatgagaacaagta  11423300                                                   <---------ARR14(2)                                                   <-----------ARR10                                                   --------->ARR11(3)                                                   <---------AGP1                                                   --------->ARR14(2)                                            <---------At4g35610                                          --------->REM1(1)     <-------GAMYB                                          <---------ALFIN1    <---------DEAR3(1)                            ================================HOX2a_HOX2a                            <------ZmHOX2a(1)     <---------CCA1(2)                         --------->At4g35610----------->RAV1(2)<---------MYB46(3)          <---------At4g35610               <---------At4g35610      <----------DOF2     ------>NtERF2  <------NtERF2   --------->At4g35610               --------->At4g35610      <-----------HVH21   ------------>AtMYB77       <-----------GT1  <------ZmHOX2a(1)---------->DOF2    --------->At4g35610  ----------->HVH21   <---------At4g35610 xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->ARR14(2) ------>ZmHOX2a(2)     <---------At4g35610 xxxxxxxxxxxxxxxxxxxsmallRNA(i2) --------->WOX13(1)<---------ARR11(3)      --------->At4g35610     <-   tgtaggatagatttagtagctgaaagcagaggaatcaatccgcttcacctgtggatctatcccgacggttgtctggccgcttgctgatttaacagctctc  11423400             <---------AtLEC2        <---------DAG2        <----------DOF2                                                                     ---------    <---------ZAT14                                                                        <---------ATHB12    --------->ZAT14                                          --------->ZAT18             --------->WOX13(1)    <---------ZAT18                       <xxxxxxxxxxxxxxxxxsmallRNA(fl3)             --------->TOE2(3)    --------->ZAT18       <-----------HVH21                  <---------ZAT18          ------->GAMYB ---------DOF2   ---------->DOF2--------->At5g28300   <-------TEIL         --------->WOX13(1)    ----   tctttctgcacttttgcattaaagactatgtcactgtaatttgacatagccttcgatacatagtgcaattttctcatcaatctcttaaccccaatcacac  11423500                                                                     --------->At5g28300                                                                    <---------ZAT6                                                                    ----------->GT1                                                                <---------ARR14(2)                                                               <---------GLK1(1)                                                               --------->CCA1(2)                                                               --------->GLK1(1)                                                               <----------TaMYB80                                                              <---------ARR14(2)                                                              --------->ARR14(2)                                                              <---------ARR11(3)               ------                                                             <------ZmHOX2a(1)       --------->ANAC58                                                           <---------TOE2(3)         --------->ANAC58                                                          <-----------RAV1(2)        --------->ANAC46       ----------->RAV1(1)        --------->DAG2    ----------------->AGL1          ------->GAMYB >YAB1--------->ANAC46    --------->AHL20(2)        ----------------->AG           <---------ALFIN1 ------>DOF2--------->AHL20(2)   ---------->DOF2    <-----------------AGL1       ----------->RAV1(1)   aaagctcaacaccataaatttgaacaaataaaacaaaaagcatcaaactttgctaccgattcaggatatactgtaaattagagcaacacccatctaagaa  11423600                                 <---------ANAC46                                <---------At4g35610                                --------->At4g35610                                <---------ZAT2                                <------NtERF2                               <---------ERF1                               <---------ATERF1(1)                               <---------DEAR3(2)                               <---------RAP2.3(1)                               ------>NtERF2                               <---------MYB46(3)                              <---------RAP2.3(2)                              <---------RAP2.3(3)                              <---------RAP2.6(2)                          <---------At5g28300                         --------->MYB52(1)                 ----------->HVH21              --------->ARR14(2)--------->ATERF1(1)              <---------ARR14(2)<-------GAMYB             <------ZmHOX2a(1)<---------DEAR3(1)       <---------TOE1(3)                  --------->AHL20(2)           <---------TOE1(2)------->GAMYB     ----------->GT1                     <---------HSFB2a(1)     ----------->HVH21   <-----------GT1     --------->ALFIN1    *TSS             --------->HSFC1(2) ---->DOF2 <---------TOE2(2)<---------RAP2.3(1)        <---------TOE2(3)          --------->HSFB2a(1)   agaaactatgacgcaggatttgacatttaacggcggctgatacaagagtggagaattagggttttaagagaagagaagagaagagggttccattaaatac  11423700                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                              <------                                                                                              <------                                                                                              <------                                                                                              <------                                                                                              ------>NtERF2                                                                                             <-------                        ----------->HVH21                                                    <-------                        --------->WRKY38(1)                                                  <-------                        --------->WRKY12                                             ------>ZmHOX2a(1)                      <---------At4g35610                <---------LBD16         --------->ARR14(2)                 <------------CBF---------->DOF2       <-----------GT1           <---------ARR14(2)            --------->WOX13(1)  <---------ATHB12     <---------AHL20(2)        --------->LBD16<------          ------------>CBF  ------------>CBF     <---------AHL20(2)          <---------LBD16 <-------        --------->YAB1--------->At4g35610   <---------ZAT6 --------->LBD16---------->DOF2 --------->ANAC46   agaaatgtattcatcaatctattgggctgacccaataaagcccatagtgttttaatttatccgggtcgagttgcgataaaccgggtccttaaacggcggc  11423800       --------->ICU4     --------->ATHB12  <---------ANAC46  <---------ANAC55(2)                 <-----------HVH21  --------->ANAC55(2)                --------->bZIP60(1) -NtERF2                             <---------bZIP60(1) --->ATERF1(1)                       <---------TGA1a ----At4g35610                       <---------bZIP60(2)             --------->ZAT14               <- ---ERF1                             --------->TGA1a                 <---------ZAT18               <- ---RAP2.3(1)                        =================bZIP_DOF     <---------RAP2.6(3)             <- ---DEAR3(2)                       <------ZmHOX2a(1) <---------AHL20(2)                            <- ---MYB46(3)                     <---------TOE2(3) ----------->TBP <---------SPL7                 <-- --RAP2.6(2)              <---------TOE1(3)  --------->REM1(1)     <---------ATERF1(1)        ------- --DEAR3(1)               <---------TOE2(3)<----------DOF2        --------->DEAR3(1)       <---------ANAC46 --RAP2.3(2)       <---------TOE1(3) =================bZIP_DOF    --------->RAP2.6(2)      <---------ANAC58 ---ATERF1(1)      <---------TOE2(3) <---------DEAR3(1)          --------->ATERF1(1)    <----------DOF2 --ANAC46----------->GT1 <-----------GT1 <---------DEAR3(2)<------------CBF---------->DOF2 <---------ANAC58   tactacgtgattagtaaaattagggtttaacgattaaggacgtcgcttcaactatataatcaattgggccgtccactagaagcccatgctctttcgtaag  11423900                                                                        --------->GLK1(2)                                                                        <---------ARR14(2) <---------ARR14(2)                                                     --------->ARR14(2) --------->ARR14(2)                         <-----------GT1            --------->GLK1(1) --------DEAR3(2)                      <---------ANAC58                <---------GLK1(1) -----MYB83                            <---------ANAC58            ----------->GT1 --------MYB46(3)                      <---------ANAC46     <---------LBD16                   <------ -----MYB46(1)--------->LBD16 --------->ARR14(2)            <---------ANAC46              <----------DOF2 -------DEAR3(1) ------------>CBF   <--------P<-----------GT1--------->LBD16              <---------DAG2 -->SPL7    <---------LBD16   <---------ARR14(2)           <---------LBD16             <-----------GT1   tcggttcgggttataccgggtcaatttagacaaatcgggttgcgtttttcactctgtttttcgcgggaatgggaaatctgtgaaacatgttacttttttc  11424000                                      --------->GLK1(1)                                     --------->ARR14(2)                                     <-----------ARR10                                     <---------ARR14(2)                               <---------ANAC58                                 --------->LBD16                               <---------TOE1(2)                         <-----------GT1                                    --------->O2                      <---------GLK1(2)                                     <---------O2                      --------->ARR11(3)                                    <---------ANAC46                <---------ANAC55(2)  <---------GLK1(2)                      --------->TGA1a         -                --------->ANAC55(2)--------->LBD16                   --------->ZAT14  <---------ANAC58                --------->ANAC46 <---------LBD16                ======================bZIP_DOF   ----             <---------ARR14(2) --------->LBD16                 <----------DOF2<---------TOE2(2) <---      <----------DOF2 <---------ARR11(3)                 --------->At4g35610========================= -----GT1    --------->ARR14(2)<---------LBD16           <---------At4g35610<---------TGA1a <--------   ttcatcgtctttgcaattacgcgagattttcttcccgcggattttctctgtgttcgtgaagctgaactttctgaactctcgtgggttttcgtctgattct  11424100              --------->ATERF1(2)             <------NtERF2            <---------ATERF1(1)            ------>NtERF2            --------->ABI4(1)           --------->RAP2.3(3)           <---------ATERF1(2)           --------->ATERF1(2)           --------->DEAR3(1)           <---------DEAR3(1)           --------->RAP2.3(2)          --------->ATERF1(1)          --------->DEAR4(2)          --------->RAP2.3(1)   --------->YAB1          --------->ERF1       <---------ATHB12        --------->ANAC46  --------->ANAC58    --------->DOF5.7(2)                                   <      <---------ATERF1(1) --------->ANAC58   <----------DOF2                                        - --------->DOF2<---------DEAR3(2)---------->DOF2                                        ------->GAMYB ----->At4g35610 <---------CCA1(2)           --------->TOE1(3)                         <---------MYB52(2) ------At4g35610<---------MYB52(1)           --------->TOE2(3)      --------->ETT(2)   --------->ANAC58 ==========bZIP_DOF     ---------->DOF2----------->GT1              <---------ETT(2)   --------->ANAC58 -GLK1(2)<---------ATERF1(1) --------->WOX13(1)           <---------GLK1(2)    --------->ARR14(2)   -   gctaaagccctcgccgccggtatctctaaagcaatcaaagaaggaaactttaacttgttagattcttctgtctacggttcaaatttgcaacgaaacgaga  11424200  Previous    Next  AGI:  At1g31835.1    Description:  unknown protein Range:  from: 11423040    to: 11423665    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g31840.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G12300.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66713.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 11423987    to: 11426059    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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