Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                    --------->ZAT2                                                  <---------ZAT2                   <---------ICU4                ------>MYB46(1)                   --------->YAB1                ------>MYB83                     --------->MYB52(1)                  --------->ICU4            ------>MYB83                       --------->At4g35610             --------->CCA1(2)              ------>MYB46(1)                    <---------At4g35610            --------->ARR14(2)            <---------MYB59                 --------->ANAC46          -        <---------LBD16                   --------->AtMYB61              --------->MYB46(3)       <--        --------->YAB1               --------->AHL20(2)   <-------TEIL<-----------GT1       <--------   aaattctcaatcgggatacaataatcaaacaaaactcaataaaaccaaacctagctcagattcaaaactatattacccatcagcaaacagtgtttaacaa  11411800                                                        -------->HAHB4                                                        <---------ICU4                                                        <--------ATHB1                                                       <---------YAB1          <---------YAB1             --------->At5g28300                     --------->YAB1           --------->KAN4(2)      --------->YAB1                       <---------ANAC58                  <---------ICU4   --------->YAB1                       --------->DAG2 --------->ICU4       <---------YAB1 ---------->GT1           <---------ARR11(3)      ----------->GT1     --------->DAG2         -------- -------ATHB12     <----------ID1      ---------->DOF2 <---------ATHB51     --------->ICU4   -------- ---GT1     ----------->GT1 --------->YAB1 <---------ANAC58          ---------->DOF2    <---------ZAT14   atcagttataagaacagtaaatggacaaaatcatacagagaaaaagcgtgatcagtaataattcaattccataaagtgatcattcttgactatacaagct  11411900                                         <------ZmHOX2a(2)                                  <---------ARR14(2)                                  --------->GLK1(2)                ================================HOX2a_HOX2a                <------ZmHOX2a(1) --------->ARR14(2)    ----------->GT1       <---------ARR11(3)    <---------ANAC55(2)   <---------ARR14(2)                 ----------->GT1       ----------->GT1    <---------ANAC58      --------->ARR14(2)             ------>MYB46(1)       <------ZmHOX2a(1)    --------->ANAC55(2)   --------->ARR11(3)             ------>MYB83          ======================    <---------ANAC58     <---------CCA1(2)              ----------->RAV1(1)    ====================== ->ANAC58     --------->ANAC46   <---------CCA1(2)     --------->AtMYB61    <---------LBD16 ->ANAC58     <---------TOE2(3)  <---------GLK1(1)    --------->MYB46(3) <---------GLK1(1)   tcaatttcgtaactataaggaacctatatatctgcaaatctggatcaaacaaggctaccaacacagaaaatatagaattcaggaatggtgaacacaaaca  11412000                --------->YAB1             ----------->GT1       ------>ZmHOX2a(2)      <------ZmHOX2a(2)                  <------MYB46(1)         --------->TOE1(3)      --------->ARR14(1)                 <------MYB83          ------->TEIL             <-----------HVH21      --------->CCA1(2)                 --------->MYB59------>ZmHOX2a(2)               <---------TGA1a     --------->ARR14(2)                 <---------AtMYB61  --------------->AtSPL8      ==============     --------->ARR11(3)               <---------MYB52(1)   --------------->AtSPL3      --------->O2     <---------ARR11(3)            ------>ZmHOX2a(2)  <---------At4g35610              --------->TGA1a     --------->AGP1               <------ZmHOX2a(2)   --------->At4g35610              <---------O2     <---------ARR14(2)          <---------ARR14(2)  <---------AGP1            <---------YAB1   ----------->ARR10             --------->ARR14(2)  --------->ARR14(2)      --------->YAB1 ============HOX2a_HOX2a  <---------ARR14(2)         <---------ARR14(2)     --------->ICU4 =============HOX2a_HOX2a --------->ARR14(2)<-------TEIL   ------->TEIL     <---------ATHB12       <-   aaactaagatccgagtagtaataaaccgaaaccgagatcggtttggttcattttggatctgaacgtaccttcaaacccatgatgaatagacgtcggaagt  11412100                                                         --------->CCA1(2)               <---------AHL20(2)                       <---------ARR11(3)               --------->AHL20(2)                       --------->ARR11(3)         <------ZmHOX2a(1)                         <-----------HVH21        <------MYB46(1)                           <---------ANAC58        <------MYB83                              >>>>>>>>CAMTA3                     *TSS      <--------P                                  <---------ANAC55(2)        <-----------GT1    <------MYB83                                  <---------ANAC58       --------->YAB1       -------    <------MYB46(1)                          <---------WRKY12           --------->ICU4        -------  <---------WOX13(1)                         <---------WRKY38(1)        <---------YAB1        ------- ==============MYC_MYB <---------ZAT6      <--------------OsCBT      <------NtERF2<-----------HVH21-- --------TOE2(3)<---------AHL20(2)         <------ZmHOX2a(1)        <---------RAP2.6(3)     ---------   tgagattggtaggagaattaaatcagtgtaagacggagaagacgaggacaacgcgtgagatatatatgggcgtcatgataaacctctcaggcccataagc  11412200                                                              >>>>>>>>>GATA-4       <---------ANAC58                      <---------TOE2(3)                       >>>>>>>>>GATA-3       <---------ANAC46                    ---------->DOF2                           >>>>>>>>>GATA-2  <------------CBF                 <----------DOF2                              >>>>>>>>>GATA-1  <---------ANAC58               <-----------------AGL1        ----------->ARR10--------->ARR14(2)    <---------ANAC58           <---------AHL20(1)            <---------ZAT6       <---------ARR14(2)<---------WOX13(1)           --------->ARR11(3)    --------->AHL20(1)      <---------ANAC58      <---------ANAC58      --------->AHL20(2)         <---------AHL20(1)      <---------ANAC58     <---------MYB46(3) -->ANAC58 --------->AHL20(1)    --------->ARR11(3)      <---------ANAC46     --------->ATHB12 -->ANAC58 <---------ARR11(3)    <---------ARR11(3)   --------->ARR14(2)     --------->WRKY38(1) -->ANAC46<---------AHL20(2)<---------AHL20(2) <---------GLK1(2)            <---------MYB52(1) ------->ICU4 <---------AHL20(2)<---------AHL20(2)    <---------ARR14(2)   <-------GAMYB ->DOF2<---------AHL20(2)   --------->AHL20(2) --------->ARR11(3)    <---------ALFIN1      <---------YAB1   cataactattaaatattttctttaaaggaaataaatatttttagagatagatactgtatacgtggattcagacaccccgttgattggcttattctgatca  11412300                                           --------------------->WRI1                        <-------                                        <----------DOF2                                  <---------AHL20(2)                                      ---------->ID1                                    <---------AHL20(2)                                     <-----------GT1                                    --------->AHL20(2)           --------->At5g28300    <------------------------ANAC81                     --------->TOE2(3)          ----------->GT1    <XXXXXXXXXXXXXXXXXXXXMIR415                              --------->YAB1     <-------TEIL ---------->DOF2<---------MYB52(1)                             --------->YAB1   gtatgggtacaactgtaaaacaaagaacatgttctgttttttcttttttttgctcatcgaacatgttccttctccattgaaatgacaatattaattttct  11412400                          <----------DOF2                          ------>ZmHOX2a(1)                      --------->ARR14(2)                      <---------ARR14(2)                     <---------CCA1(2)                                                              <                     --------->GLK1(1)          <---------TOE2(3)                             ------>ZmHOX2a(1)                     <---------GLK1(1)    ----------->GT1                                     =======    --------->YAB1 --------->YAB1    --------->AHL20(2)                                    <---------YAB1 ----GT1     --------->TOE1(3)     --------->TOE2(3)                                      <----------   gttccatcagaaaaaccataagcatatccttttgtaaacttaaatagtttaatgaaaaaaaaactatttctgtttctgtgctagttgaatattatccttt  11412500                                                                          <---------YAB1                                                                        --------->YAB1                                                               <----------DOF2                          <---------GLK1(1)                   ------>ZmHOX2a(2)                    --------->ANAC58                         ===================================HOX2a_HOX2a          <---------GLK1(1)                                  <------ZmHOX2a(2)              ---------          --------->GLK1(1)                                 --------->ARR11(3)              <--------         <---------ARR11(3)  <---------ANAC58               <---------ARR14(2)             --------->GLK1(1)         --------->ARR11(3)  <---------ANAC58         ---------->DOF2  <---------YAB1      <---------GLK1(1)   <---------YAB1   <---------ANAC55(2)       <---------ATHB12==================================HOX2a_HOX2a ------ZmHOX2a(2)   --------->ANAC58   --------->REM1(1)    --------->ARR14(2)    --------->DAG2 ======HOX2a_HOX2a  <---------O2  --------->ZAT6  >>>>>>>>>>MYB80      --------->ICU4    <------ZmHOX2a(1) -GT1   <<<<<<<<<RAP2.2<---------TOE2(2)----------->RAV1(1) <---------ARR11(3)   ---------->DOF2   ggatcattttagatatccagacacgtagatttcttcccactacaacaaatcaaaccaaaagggatctttggtgattataagaaaaaagggaggaaatctt  11412600                  --------->ANAC58                  --------->ANAC58                  <---------TOE2(3)         --------->MYB52(1)         ------>MYB83         ------>MYB46(1)        --------->MYB55(1)                                                                          <       <---------MYB59                                                                              <       <---------MYB46(2)           <------ZmHOX2a(2)     ------>ZmHOX2a(1)                      <---       <---------MYB111(1)  <---------TOE2(3)       --------->AtMYB61                         <------      --------->ANAC55(2)--------->AHL20(2)   ---------->DOF2                                 <------      <---------ANAC55(2)<---------YAB1    --------->TOE2(3)    --------->ANAC58    ---------->DOF2 - >ARR11(3)     <---------ATHB12     =============================HOX2a_HOX2a     --------->AHL20(2)-- -ARR11(3)>>>>>>>>>MYB98 <---------AHL20(2)--------->TOE1(3)    --------->ANAC58 <---------AHL20(2)--   ggaagattacctaacaaatcaaggaatataaatgttagatcaaaaccataaagaccattcctccacaagtaaactaaactaaattaaaaagaggttaagg  11412700  Previous    Next  AGI:  At1g31812.1    Description:  ACBP (ACYL-COA-BINDING PROTEIN); acyl-CoA binding. Identical to Acyl-CoA-binding protein [Arabidopsis Thaliana] (GB:P57752); similar to ACBP1 (ACYL-COA BINDING PROTEIN) [Arabidopsis thaliana] (TAIR:AT5G53470.1); similar to Acyl-CoA-binding protein (ACBP) (GB:Q39315); contains InterPro domain FERM/acyl-CoA-binding protein, 3-helical bundle; (InterPro:IPR014352); contains InterPro domain Acyl-CoA-binding protein, ACBP; (InterPro:IPR000582) Range:  from: 11410856    to: 11412185    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g31814.1    Description:  FRL2 (FRIGIDA LIKE 2). similar to FRL1 (FRIGIDA LIKE 1) [Arabidopsis thaliana] (TAIR:AT5G16320.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN71369.1); contains InterPro domain Frigida-like (InterPro:IPR012474) Range:  from: 11412589    to: 11414483    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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