Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                               --------->DAG2                     --------->ALFIN1                                                               -               --------->ALFIN1                               <----------DOF2                      *TSS ---->DOF2  <---------DEAR3(1)                    <---------At4g35610                            ---- >GT1  ---------->DOF2      ---------->DOF2       --------->At4g35610            ---------->DOF2<----   agaaggaactaaagacggtggagatggaggtaaagctaattccaaagttttcatctgaaattttcttttgcagtcgcagagcttaaagagaagaaagatt  11396000                                                        <------MYB46(1)                                                        <------MYB83                                                     --------->ARR14(2)                                                     <---------MYB52(1)             <-------TEIL                                               --------->ANAC58                     <---------LBD16       --------->AHL20(1)                 --------->ANAC58                --------->AHL20(2)       --------->ARR11(3)                 --------->ANAC58   <----------DOF2    --------->MYB59       <---------AHL20(1)      ---------->DOF2 --------->ANAC58          --------->ICU4         <---- -------->MYB52(1) >>>>>>>>>TBF1        ---------->DOF2--------->MYB59   --------->AHL20(2)     ----- ----->YAB1  --------->HSFB2a(2)      ----------->TBP<---------ARR14(2)  <---------AHL20(2)   ------- ---TEIL     <---------HSFB2a(2)   <----------ID1  <---------DEAR3(2)    <---------ATHB51    <-------   cataacgaatattttgtagaagaagaagatgaacaaagctacaaaagccaagccggttcggttcttttgtttgaaataattttaggtccggtttgattat  11396100                                                    --------->ANAC46                     ------->MYC2                                                 --------->REM1(2)                       ------->MYC3                                               <-------MYC3                              <-------MYC3                                               ------->MYC3                              <-------MYC2                   <---------ICU4             <---------ANAC58                          <---------ANAC46              --------->DOF5.7(2)             <---------ANAC58                         ------>NtERF2             --------->TOE2(3)                <---------ANAC46                        <---------ANAC58             --------->TOE1(3)              <---------ANAC46                          <---------ANAC58            ----------->GT1                <---------LBD16                            <---------ANAC46           <---------TOE2(3)              <---------ANAC58                           --------->ATERF1(1)     <---------ATHB12                     <---------ANAC58                  <---------YAB1 -----YAB1<---------DOF5.7(2)          --------->GLK1(1)                <---------ANAC58<------NtERF2 ------>TBP<---------TOE1(3)          <---------GLK1(2)                 <---------ANAC58<---------ANAC58 -->YAB1  <-----------GT1      --------->ANAC58<-------MYC2             <---------ANAC46<---------ANAC58 --YAB1   --------->MYB52(1)   --------->ANAC58------->MYC2  ----------->RAV1(1)  <-----------RAV1(2)   aaatccactaattaacgttaaatatgacgaactacgcacagatttcgcgcgtgtacatcactgccacaaaacttgcttatgtttgcaggcgcgtgtgttt  11396200                                               --------->ATHB12                                       --------->AHL20(2)                                   --------->AHL20(2)                       --------->AHL20(2)                                   <---------AHL20(2)                       <---------AHL20(2)                         <------ZmHOX2a(1)   <<<<<<<<<<<<<<<<<LFY          --------->ICU4                       <---------TOE1(3)     >>>>>>>>>>>>>>>>>LFY     ----------->GT1        ========                       <---------TOE2(3)--------->YAB1               <---------TOE2(3)       --------                ------->MYC3      <---------AHL20(2)               ---------->DOF2   <---------ALFIN1                <-------MYC3      --------->AHL20(2)    --------------->AtSPL8  <---------ICU4      -           <---------AHL20(2)     --------->YAB1        <---------------AtSPL8  --------->YAB1     --   gtttatgtgttatataaacgtgtttaaggaaactaattaaaataaaaatccattggattttgtactaaacaaaggtaattaatagtgacacctcttaaag  11396300                             <-----------HVH21                            =====================================bZIP_DOF                            --------->bZIP60(2)                            <---------O2                            --------->O2                            --------->ANAC55(1)                            <---------ANAC55(2)             <---------MYB52(1)       <------------------------ANAC81            --------->TOE2(3)<-----------TGA1          ------->TEIL      --------->ANAC58        <---------ZAT14     --------->ANAC46        <---------ZAT18     --------->ANAC55(2)      <---------------AtSPL3--------->TGA1a   <---------YAB1           <---------TGA1a   --------->ICU4           --------->ANAC58          <----------DOF2 =====================================bZIP_DOF<<<<<<<<<TBF1    --------->ZAT14 -->DOF2--------->ZAT18    <-----------STF1 <------------------------ANAC81 -------->ICU4 ----------->GT1----------->HVH21  <<<<<<<<<TBF1 <---------ZAT14 ------->ARR11(3)         <---------ALFIN1 <<<<<<<<<TBF1     --------->ANAC46      *TSS           <--   agataatgagtgtacgttagtaaaatgcacacgtcacatctcttcttcttcttcttcttttccacttcagtctctgtttttagctctgtgatttgagttt  11396400            <-------GAMYB           <---------ANAC58           <---------ANAC58           <---------ANAC46          <------NtERF2                                                               <------ZmHOX2a(2)         ------>NtERF2                                                              --------->GLK1(1)        --------->ALFIN1                                                <---------ANAC55(2)        <---------DEAR3(1)                                              <---------ANAC58       --------->ATERF1(1)                       ------>NtERF2          --------->ANAC55(2)     <---------DEAR3(1)             <----------DOF2       ----------->GT1      <---------LBD16    <---------LBD16          <----------DOF2    --------->DEAR3(1)    --------->MYB52(1)        ----- -------AHL20(2)<---------AtLEC2  ------>ZmHOX2a(1)       <---------ZAT6<---------ANAC58    <--------   ttattttgcggtggcgttgtatggctatggcctttcctctttcttatactccgacgattactgttaaaccagtaacgtactctcggagatcgaactttgt  11396500                                     <------ZmHOX2a(1)                              <----------DOF2                              ------>ZmHOX2a(1)                            ------>ZmHOX2a(2)                                                     <--                            ================HOX2a_HOX2a                                          <---                           <------ZmHOX2a(2)                                                     ----                           =================HOX2a_HOX2a       ---------->DOF2                    <---                          --------->AGP1                 <---------ANAC46                     <------                          --------->ARR11(3)             ----------->GT1                  --------->HSFC1(2)                          <---------ARR11(3)        ------>MYB83                --------->HSFB2a(2)                          --------->ARR14(2)        ------>MYB46(1)             <---------HSFB2a(2)                          <---------ARR14(2)        --------->MYB52(1)     <---------HSFC1(2) <------                         <---------GLK1(1)        <---------MYB111(1)      --------->HSFC1(2) <------ ----->ID1               --------->GLK1(1)        <---------MYB59     --------->HSFB2a(2) <---------HSFB2a(1) --DOF2                 ----------->ARR10         <---------MYB46(2)  <---------HSFB2a(2) <---------HSFC1(2)   agttttctcgtcgagttctaatggacgagatcctttagaggagaattcagtacctaatggtgtgaaaagcttggagaagcttcaagaagagaagcgtcgt  11396600                                       --------->ANAC58                                       --------->ANAC46                                       --------->ANAC58                                      --------->SPL1(2)                                      <---------LBD16                                      --------->SPL7                  <---------ATHB12                                     --------->SPL1(1)              ------>MYB46(1)                                    <---------SPL7                  ------>MYB83                                  <---------------AtSPL3          <---------MYB59      <---------At4g35610    <----------DOF2--------->ARR11(3)    --------------->AGL15 --------CDC5              <---------At4g35610                    <---------------AGL15 ------At4g35610       --------->HSFB2a(2)  --------->GLK1(2)    ----------------->AGL2 ----->ZAT2            <---------HSFB2a(2) <---------GLK1(1)     ----------------->AG ------ZAT2          ----------->RAV1(2)   --------->GLK1(1)     ----------------->AGL1 ---ANAC58         <---------ANAC58 --------->ZAT14            <-----------GT1             --------->MYB52(1) ---ANAC46         <---------ANAC58 <---------ZAT14   --------->GLK1(1)                   ------>ZmHOX2a(1) ---ANAC58    <------ZmHOX2a(1) <-----------------AGL1<---------GLK1(1)                   --------->ICU4   gctgagttatctgctaggattgcttctggagctttcactgtacggaaatctaggtgaattcccatttaccaaatcaagaagcatgtattgtcctaatgga  11396700                                           <---------ANAC58                                           <---------ANAC58                                ----------                                       <---------ANAC58                             <---------ZAT14                               <----------DOF2              --------------->AtSPL8  --------->ZAT14                         <---------GLK1(2) <---------ANAC46<---------ANAC46    <---------ZAT14   <---------GLK1(2)   <---------YAB1  <---------ANAC58 <---------AtMYB61      --------->ZAT14   gcattgattctgtaaatgttttgtcttgattctcttttggttcttgtgtgtttttgttttggtttgtacaagttttccatctacagtgaagaatggttta  11396800                                                                                    ---------->DOF2                                                                                    --------->MYB52(1)                <---------ATHB12                                         <---------ARR14(2)               --------->ANAC58                                          --------->ARR14(2)               --------->ANAC58                                        --------->HSFC1(2)               ------>MYB46(1)                                         <---------HSFB2a(1)  --------->ATHB12                       <---------WOX13(1)            <---------HSFC1(2) <---------TOE2(3)                     --------->ATHB12         -------->P   ------>ZmHOX2a(1) <---------YAB1--------->ANAC46   <---------YAB1            --------->ZAT6 ----------->RAV1(2)      < ->GT1         ------>MYB83--------->ATHB12          ----------->HVH21 --------->HSFB2a(1)      <----   tctaagattggaataccaagcaatgttcttgatttcatgtttgattggactggttctgaccaagactaccccaaggttcctgaggctaaaggctcgattc  11396900  Previous    Next  AGI:  At1g31790.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G24000.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63728.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 11394671    to: 11395999    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g31800.1    Description:  CYP97A3/LUT5 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3); carotene beta-ring hydroxylase/ oxygen binding. similar to LUT1 (LUTEIN DEFICIENT 1), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G53130.1); similar to hypothetical protein OsI_009265 [Oryza sativa (indica cultivar-group)] (GB:EAY88032.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABD28565.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ51253.1); contains InterPro domain Cytochrome P450, E-class, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) Range:  from: 11396383    to: 11399695    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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