Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                         --------->ZAT18                                                                       <---------ZAT18                                                                       <----------ID1                                                                    <---------ANAC46                         <-------TEIL                        <---------ANAC58                      <-     ------>NtERF2       --------->ZAT18                     <---------ANAC58                     <--   <---------RAP2.6(2)   <---------ZAT18                ----------->RAV1(2)                 <--------  --------->RAP2.6(3)--------------->AtSPL3             --------->At4g35610        ---------->DOF2--- ---->AHL20(2)       <---------------AtSPL8----------->GT1   <---------ANAC46  <----------ID1  ------ ----DOF2     --------->CCA1(2)  ---------->DOF2       --------->ARR11(3)  ---------->DOF2  <--------   aaatttcggccaatagatagggagaagtacacatataaagagagagagtaacaaaaacatctggcatgttaagtggacaaaggcacaaagcatttcttga  11337100                                                --------------->AGL15                                                <---------------AGL15                        --------                                                <---------HSFB2a(2)                        ----------                                                --------->HSFB2a(2)                        <---------                  --------->ARR14(2)            =====================================================                  <---------ARR11(3)         --------------->AGL15        --------->YAB1  -----------                  <---------ARR14(2)         <---------------AGL15 <---------ZAT6         <----------                 <---------GLK1(1)           ========================================================                 --------->GLK1(1)      --------->GLK1(1)        <---------ANAC58         <----------  --------->CCA1(1)                     <---------GLK1(1)        <---------ANAC46         -----------  --------->RVE1(1)         --------->ANAC55(2) ===================================================== --------AHL20(2)<---------CCA1(2)    <---------ICU4       --------->ARR11(3)             <---------- -------AHL20(2)--------->ARR14(2)    --------->ATHB12     <---------ARR11(3)             ----------- -ANAC58     <---------ANAC58        --------->ICU4       --------->GLK1(1)               <---------- ------>AHL20(2)<---------ARR14(2)   <---------YAB1       <---------GLK1(1)               ----------- --->ATHB12  <---------ANAC46      --------->YAB1 ---------->DOF2<---------ANAC58  ------>NtERF2    < -ANAC58     <---------ANAC58  ------->TEIL  ========================================================   ttaaatatccaatatgcgtatatctgatatatgtaactcatgatttccttctaaaagaagaaatcttgagtgttattcatatcgaggccaatgccatttt  11337200      <---------YAB1   --------->ICU4 ->ICU4 ----->AGL15 ------AGL15 =======MADS_MADS ------>AGL2 -------AGL3 =======MADS_MADS                                                                              <----- -------AGL2                                                        ------------>CBF           <----- ------>AGL3                                                       --------->ANAC58            ------ ======MADS_MADS                                              <----------ID1                  ======= -------AGL1                                                  --------->ANAC58                <------ ------>AG                                                    --------->ANAC58            ------>MYB83 -------AG                                                  --------->CCA1(2)             -------->P ------>AGL1                                     <------------CBF  --------->ANAC58       ------>MYB46(1) --------P   <---------PCF2                --------->YAB1 --------->YAB1                --------->AtMYB61 ======MADS_MADS        <----------DOF2   <---------YAB1 <---------YAB1                 --------->MYB46(3)   tggtaagtattagtgggagcatgctccttttcttatttcaaagtatcatcaaattgactatgatacgacaaacaatgccatgttcgaacaccaactcctt  11337300                                                               ----------------->AGL3                                                               <---------ZAT18                                                               --------->ZAT18                                                               <-----------------AGL3                                                             <---------TCP11(2)                                                             --------->PCF2                                                             <---------PCF5       --------->YAB1         <------ZmHOX2a(1)              <---------TCP16(1) -----DOF2                   ----------->GT1          <----------DOF2      --------->HSFB2a(1) ----------AGL15   --------->ANAC58                <------ZmHOX2a(1)       <---------HSFC1(2) --------->AGL15   --------->ANAC58            --------->TOE1(2)           <---------HSFB2a(1) ================================================================================MADS_MADS          < -----------AGL3   --------->ANAC46            --------->TOE2(2)    --------->MYB52(1)       ------>ZmHOX2a(1)   ttaatggaatcacagttttaaacgaaacaagaggaaatacaaaacaaaacataggacttttggggtccactaatggagccttcttaagtagcatccttct  11337400                                  --------->HSFB2a(2)                                  <---------HSFB2a(2)                                ------>ZmHOX2a(1)                         <---------ICU4                                                    <---------MYB46(3)                         --------->ATHB12                                                >>>>>>>>>ARR2                         <--------HAHB4                        <---------AHL20(2)       --------->ATHB12                         --------->YAB1                       <---------AHL20(2) <---------TOE2(3)                        <---------ATHB12           <----------DOF2         <---------DAG2<-----------                    ------------>CBF            <---------ARR11(3)         <----------DOF2<---------WOX13(1)   <-----------RAV1(1)--------->WOX13(1)        --------->ARR11(3)    <-----------GT1  <---------YAB1 ---------MYB52(1)--------->At4g35610     <---------HSFB2a(2) --------->AHL20(2) <---------TOE1(3)  <   cccttgtgttgatgagaagaagctcaatcatttcctctagaattctataagttcttttttcttataaatttgttacactttttaaggttttgattgttcg  11337500                                                                       <----------DOF2                                                                       ------>ZmHOX2a(1)                                                                    ---------->ID1                  <                                                                <----------DOF2                     -                                                                <---------DAG2                    ---             <-----------GT1                ----------->GT1 <---------RAP2.6(2)              <-------             --------->ZAT6  <------------CBF    <---------YAB1<---------ANAC58          <---------ANAC46 -CBF  <---------ZAT6      --------->ARR11(3)    --------->ICU4<---------ANAC58          <---------ANAC58 -----------TBP      <----------DOF2      ------->TEIL    <-----------RAV1(1)            <---------ANAC58   atatttatagtgttttcactaagctttaagttattgagatggtgaaccgtgataattctattgtggctttatccttttttatgctcttcttgcttgtgtt  11337600                           --------->LBD16                          <---------ANAC46                         <---------LBD16                      --------->ZAT2                        <---------ARR11(3)                      <---------ZAT2                  ------>NtERF2                      <---------At4g35610             <------NtERF2                                 -                      --------->At4g35610            --------->ANAC58                --------->MYB46(3)                  ================RAV                --------->ANAC58           --------->AtMYB61   < ---------At4g35610   ----------->RAV1(2)           --------->SPL7           <---------ALFIN1 ======= -------->At4g35610 --------->MYB46(3)           <------MYB46(1)            --------->MYB46(3)<------ZmHOX2a(1) ------>REM1(1)   ----------->RAV1(1)            <------MYB83           <-----------HVH21 ---------->DOF2 --ZAT6          --------->REM1(1)              --------->MYB59       --------->ALFIN1   --------->AtMYB61   acatctgcattttgaaactacaacagctgcgcgaaaaccagttagagtgtttggtccgccaagttctatcgagtggtcaccaccatcaccaccaaaggat  11337700                                                                                                   --                                                                                                   <-                                                                                                 <---                                                                       ==============================                                                                       ==============================                                                               <---------WRKY38(1)              -----                     <---------AHL20(1)                        <---------WRKY12                 -----                <------ZmHOX2a(2)                             --------->WRKY18(1)   ----------->HVH21            --------->HSFB2a(2)                          ------>MYB46(1)          <------NtERF2<-----            <---------HSFB2a(2)                          ------>MYB83  ------>ZmHOX2a(1)   --------->ANAC58       <---------MYB46(3)                               <---------ALFIN1          --------->At4g35610    <---------AtLEC2 <---------ARR11(3)                <---------MYB55(2)    --------->ANAC58 <------ -------------------->WRI1                             --------->MYB46(3)    --------->ANAC58 ------- ----------DOF2<---------ARR11(3)                  <---------ETT(1)<---------ARR11(3)      --------->ANAC58 ======================HOX2a_HOX2a       --------->MYB52(1)  <-----------HVH21    <---------At4g35610   gactttgaatggttcgagatcaatatatacaagaacattgaacaaactgcattccgacccactggtcaaggtcctagccaaggcatcggacacaaggatc  11337800                                         <<<<<<<<<<MYB80                                    --------->ARR14(2)                                    <---------ARR14(2)                                 <---------------AGL15                                 --------------->AGL15                                <-----------------AGL3 <-----------RAV1(1)            ----------------->AGL3 --------->RAV1(2)              ===================================================================== --------ZAT2                   <-----------------AG ------ALFIN1                   <-----------------AGL2 ==HOX2a_HOX2a                  ----------------->AGL2                                              - =HOX2a_HOX2a                   ----------------->AG                                   <------------- ->ZmHOX2a(2)                 <---------ARR14(2)                                       -------------- ---->MYB46(3)               <---------CCA1(2)                                         ============== -ZmHOX2a(2)          <---------ARR14(2)<------MYB46(1)                     <----------DOF2      ---- ---ARR14(2)          --------->ARR14(2)<------MYB83                     ------>ZmHOX2a(1)   -------- -->ARR14(2)    <----------ID1--------->ARR14(2) --------->GLK1(2)     ------>ZmHOX2a(2) <----------DOF2   cacctggtgctccataaaaaaacaaatactcgtatccatatttggtttgagaaactgatgttcttggtattgatccttcttttgtgtttctctttatgca  11337900                         ----------->GT1                                                         ----                         <---------MYB46(3)                                            --------->DAG2                        --------->ALFIN1                                              --------->DAG2                      <---------ANAC46         ---------->DOF2                    --------------->AGL15 ==MADS_MADS  <---------AHL20(2)             --------->AHL20(2)                  ----------------->AG ---------->GT1       <---------ANAC58    --------->WOX13(1)                     ----------------->AGL1 --AGL15 <---------AHL20(2)         <---------YAB1        ----------->GT1       -------->P     <----- ->AGL15 --------->AHL20(2)      ------->TEIL<---------AHL20(2)              <---------ANAC58 ------- =================================================================================================MADS_MADS ----->MYB52(1)       <---------ANAC58 ------->TEIL   <------ZmHOX2a(1)      <---------ANAC58-------- ->AtLEC2<---------AHL20(1)   <---------YAB1 --------->YAB1      <---------AHL20(2)  ---------->DOF2   aacggttttattttattttatatggagtggttatgaatatgaatcaattaaaagaaggatgggttatatttttgttcttacttaccaaaaaggtgagatc  11338000  Previous    Next  AGI:  At1g31670.1    Description:  copper amine oxidase, putative. similar to copper ion binding [Arabidopsis thaliana] (TAIR:AT1G31690.1); similar to ATAO1 (Arabidosis thaliana amine oxidase 1), copper ion binding [Arabidopsis thaliana] (TAIR:AT4G14940.1); similar to copper amine oxidase, putative [Arabidopsis thaliana] (TAIR:AT1G31710.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73878.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71155.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71153.1); contains InterPro domain Copper amine oxidase, N3-terminal; (InterPro:IPR015802); contains InterPro domain Copper amine oxidase, C-termina Range:  from: 11337539    to: 11341870    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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