Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           ----------->RAV1(1)       --------->LBD16      --------->ANAC46      --------->ANAC58      --------->ANAC58      --------->ANAC55(1)     <---------LBD16     --------->MYB46(3)   --------->PCF2  <---------ALFIN1 --------->LBD16 -------->ANAC58 -------->ANAC46 -------->ANAC58 ------->MYB46(3) ----->PCF2 -----ALFIN1                             >>>>>>>>>TBF1    <---------ANAC46                          < --->LBD16                       ---------->DOF2   ------->TEIL                            <---------WOX13(1) -->ANAC46             <---------At4g35610      --------->ANAC58                         --------->ATHB12 -->ANAC58--------->At4g35610   <------ZmHOX2a(1)  >>>>>>>>>>>>>>>>>LFY               --------->At4g35610 -->ANAC58<---------At4g35610<------ZmHOX2a(1)  --------->ANAC58       ----------->HVH21<---------YAB1 ->MYB46(3) ------->GAMYB  --------->ALFIN1     --------->ANAC46  <------ZmHOX2a(1)   <---------At4g35610   acccgcacccgcaactgaagtatgaagcggaggaggaaaggaagaagaagacgcaccattgtttgtaaggagcatgacacttgaattaagctgattgata  11319100                                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                              <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                             xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                            <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               <<<<<<<<<ARR2            <                       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                 <---------ATHB12   <------                    --------->ARR11(3)   --------->ZAT14           --------->REM1(1)          -------                   xxxxxxxxxxxxxxxxxx>smallRNA(si3)             --------->TOE2(3)             -------                   <---------CCA1(2)     <---------ZAT14  <---------At4g35610      --------->AHL20(2)          ---------->DOF2 <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->TOE1(3)--------->TOE2(3)--- ---------ZAT6    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   --------->At4g35610   --------->YAB1<------   tagtgatcaatataaagacttaaatcttgaaggtcccttgcaccatactgatgctcactcatcttaccttcaacacaatcaaacataaattgcctaagct  11319200                                                                                               ------                                                                                       --------->ZAT2       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    ----------->GT1           xxxxxxxxxxxxxxxx>smallRNA(i) --------->GLK1(2)                         <----------DOF2           <xxxxxxxxxxxxxxxxxxsmallRNA(si3) ---------GLK1(2)                      ---------->ID1              <------MYB46(1)     <---------ZAT2 ---At4g35610                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<------MYB83        --------->At4g35610 -->At4g35610    <---------ANAC46  <----------DOF2                --------->MYB59 <---------ICU4 -->ZAT2      --------->ANAC46 <---------GLK1(2)           --------->AtLEC2       --------->YAB1    < -------->ARR10<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       ------>ZmHOX2a(1)   --------->YAB1  <----- ---ZAT2    <-----------GT1  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<--------P   xxxxxxxxxxxxxxxx>smallRNA(i)   gagattctcggttttcacgacgtagactctccagtttctttgtttctttggtaattttgtcctgcaagtaggtctcatgactcatcatcagcttggattg  11319300                                                                           <---------SPL7                                                                      <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                     <---------ARR14(2)                                                                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                               <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                               <xxxxxxxxxxxxxxxxsmallRNA(i)                                                               <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                               <---------ALFIN1                                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                               --------->AtMYB61                                                              xxxxxxxxxxxxxxxx>smallRNA(i)                                                              <xxxxxxxxxxxxxxxxsmallRNA(i)                                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                             <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                             xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                             xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                             <xxxxxxxxxxxxxxxxsmallRNA(i)                                                             xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                            --------->bZIP60(2)                                                            --------->REM1(1)                                                            <---------ALFIN1                                                            --------->ANAC58  --------->ANAC58                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                            --------->ANAC46  --------->ANAC58                                                            <xxxxxxxxxxxxxxxxsmallRNA(i)                                                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                            --------->ANAC58--------->SPL1(1)                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                           <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                           <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                           xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                          --------->RAP2.6(2)--------->SPL1(2)                                                          <xxxxxxxxxxxxxxxxsmallRNA(i)        <------NtERF2                                     ----------->RAV1(1)--------->SPL7       <---------ATERF1(1)                                <---------ALFIN1--------->TOE2(1)       --------->ORA47(1)                                <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       ------>NtERF2                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <---------ATERF1(2)                                <xxxxxxxxxxxxxxxxsmallRNA(i)             <--      --------->ATERF1(2)                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     ---      --------->DEAR3(1)                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     <--     --------->DEAR4(2)                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      ---     --------->ATERF1(1)                               ------>NtERF2 <---------GLK1(2)            <--     <------NtERF2                                    <---------RAP2.6(2) --------->TOE1(1)       ---    <---------RAP2.3(1)                               <xxxxxxxxxxxxxxxxsmallRNA(i)          <xxxxxxxx    <---------ATERF1(1)                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxx    ------>NtERF2                                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxx   --------->ETT(2)                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------At5g28300   <---------DEAR3(1)                                --------->RAP2.6(3) <---------------AtSPL3   <--   <---------ETT(2)           --------->DEAR3(1)    <---------WRKY18(1) <------------------SPL14  --- <-----------HVH21            ------->GAMYB        ----------->HVH21 --------->ARR14(2)   <---------- --->KAN4(1)                  --------->RAP2.6(2)  --------->WRKY12xxxxxxxxxxxxxxxx>smallRNA(i)<----- -----------RAV1(1)          --------->MYB46(3)  <-------GAMYB<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <-- ----KAN4(1)                 --------->DEAR3(2) <---------MYB46(3)xxxxxxxxxxxxxxxx>smallRNA(i)<------   ttctgtcgccggcctctccataaacatggaaaccgcctcttgaacaccttcggttgacggccacaccactggattctcgtacggactggagattaccgca  11319400         <------NtERF2         --------->ATERF1(1)        <---------RAP2.3(1)        ------>NtERF2       --------->bZIP60(1)    --------->WRKY12    ----------->HVH21  <----------DOF2 -----MYC3            <---------MYB52(1) ---->PIF4  <------NtERF2 -----PIF4 <---------At4g35610 ---->MYC3 <------NtERF2 -----PIF5 ------>NtERF2 ---->PIF5 --------->LBD16 xxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxsmallRNA(si3) <---------At4g35610 xxxxxxsmallRNA(i)  <---------MYB46(3) -----MYC4--------->DEAR3(1) ---->MYC2----------->RAV1(1)              <---------MYB52(1)         --------->ALFIN1 -GT1  --------->ANAC46  --------->At4g35610                    ------>ZmHOX2a(1)   <---------ARR11(3) ----ALFIN1--------->At4g35610            <-------GAMYB        <-----------------AGL2 -----MYC2--------->RAP2.3(2)            --------->MYB52(2)    <-----------------AGL3            <--- ---ZAT18--------->RAP2.3(1)         <---------MYB46(3)   ------>ZmHOX2a(1)         --------->ARR11(3)   catgctttgacgccgcagagagttgttagctcatggagtttgttcgttatccctcccttcctcttcctgaatgtggttctccttgaggtcttattagcta  11319500                                                 <---------ANAC46                                                 <---------ANAC58                                       <----------DOF2                                    <-----------GT1<---------ANAC46                       <----------       --------->TOE2(3)   <---------YAB1        <---------ANAC58   <---------ANAC58      --------->AHL20(2)  --------->YAB1          --------->ARR11(3)   <---------ANAC58     <---------ANAC58<---------ANAC46 <---------ZAT6           <---------ARR11(3)   <---------ANAC58  <----------DOF2    <---------ANAC58 ------YAB1   <-----------GT1<----------DOF2<----------DOF2   <-----------GT1       <---------ANAC58-   tgagtgataacttaattttcgacctcattatctttgtttttcttttctttggtgtgtgttttgtttactttcttggcccaagactgtcttgtttatatag  11319600                                                                                               ------                                                                                               ======                                                                                               <-----                                    --------->ANAC46                                       <---------ZAT18                                    <---------O2                                           --------->ZAT18                                  <-----------GT1                                     <---------bZIP60(2)                              <----------DOF2                                         <---------O2                             <---------ANAC58                                    <------------CBF                        <---------ANAC58 <---------ANAC58                       --------->ATHB12                        <---------ANAC58 <---------ANAC58                      <---------AHL20(2)  --            <----------DOF2  <---------ANAC58                        <---------At5g28300  ------>NtERF2 --------->YAB1         <---------ANAC55(2)                         <-----------GT1----------->HVH21 -TBP<------------CBF   --------->ANAC55(2)                   <---------ANAC46 --------->AHL20(2)  <- ---------->GT1    --------->ANAC46 --------->O2--------->ATHB12   <---------ZAT14<---------WOX13(1)-   aaatgaaaattgtgcttttacacagtacgtggcttttcacgttgctggactcattagatttgttttgtgtttactgtctcattaattgacgaggccacta  11319700                                                                                            <--------                          <----------DOF2                                                   <--------                       <-----------GT1       ----------->GT1                <---------------AGL15 --------->AGL15    <---------ARR11(3)    --------->YAB1                    <----------DOF2---------- =====================================================MADS_MADS        <----------DOF2    <---------AHL20(2) ----ATHB12  <---------TOE2(3) <----------DOF2                         <---------DAG2    <---------AHL20(2) ------->AHL20(2)   --------->ARR11(3)  <---------TOE2(3)------>ZmHOX2a(1)  --------------->AGL15 --------AHL20(2)   <---------GLK1(2) ======================================================MADS_MADS --------->DOF2   ----------->ARR10   --------------->AGL15   <-----------GT1      ----------->GT1   attaaagctatgtctaagaatagattttcttttctttttactaagaatagtttatcttcctatattactctcacttttcttttaagagtaatttaaagtt  11319800                                                                                                    <                                                             <---------ZAT18                     ----                                                             --------->ZAT14                <--------                                                           <---------------AtSPL8         <---------ICU4                                                     --------->AHL20(2)                   --------->YAB1 -TOE1(3)                                            <---------AHL20(2)                 --------->ARR11(3) -TOE2(3)                                        <----------DOF2              <-----------GT1  ------ >DOF2                                     <-----------GT1 --------------->AtSPL8 ----------->GT1<---   ttgtttataaactatgaaatttagtaatagtttgaagtgtttttttttcttctttttaaatagagtactccatcttcaatttacatgtaaaatcatgaat  11319900                                                               --------->ANAC58                                                               --------->ANAC55(2)                                                               --------->ANAC46                                                               --------->ANAC58  --------->ANAC46 -----------GT1            --------->HSFB2a(2)      <---------ANAC46             --------->ANAC58 ----->ARR11(3)            <---------HSFB2a(2)      --------->ANAC55(2)          --------->ANAC58 -YAB1               <---------AHL20(2)             <---------ANAC58--------->ICU4 ---------->DOF2 ->TEIL   ---------->DOF2<---------AHL20(2)         <---------ANAC55(2)    ---------->DOF2 ------ARR11(3)  ----------->GT1  --------->AHL20(2)<---------ANAC58--------->AHL20(2)              -   atatacaagctcaaaagagttgtttatttatagaaaaaaaatgaaaacaatataacgtgagtcttacgaaatatttagaaagcacgaaagtttttgaaaa  11320000  Previous    Next  AGI:  At1g31630.1    Description:  AGL86; DNA binding / transcription factor. similar to AGL92, DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G31640.1); similar to putative MADS-box transcription factor [Arabidopsis lyrata] (GB:AAO42467.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) Range:  from: 11318509    to: 11319528    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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