Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        --------->AHL20(2)                                      <---------AHL20(2)                                      <---------YAB1                                     --------->AHL20(2)                                   <----------DOF2                                ------>NtERF2           ---------->DOF2      <---------ARR11(3)                              <---------ANAC58  --------->RVE1(1)             --------->ARR11(3)                --------->At4g35610 <---------ARR11(3)     --------->ZAT18                     <----------DOF2     <---------ANAC58    < --------->GLK1(2)      <---------ZAT18              --------->AHL20(2) --------->ANAC58         ---- --------->ARR11(3)     --------->ZAT14              <---------AHL20(2) --------->ANAC46     -------- ---------GLK1(2)       <---------ZAT14             --------->AHL20(2)  --------->ANAC58     -------- >YAB1<----------DOF2  --------->ALFIN1           <----------DOF2 <---------At4g35610------>ZmHOX2a(1)   caaaatctctttgtaaagttgggaagtgcagacagaccttttaattgcaaaccttttaattcctttgcagcttcacacaattgcctcctcttcattcatt  11230200                                                                      <---------AHL20(2)   <---------ICU4                                                                      --------->YAB1       --------->ATHB51                                                                      --------->AHL20(2)   -------->ATHB1                                                                     <---------YAB1       --------->AHL20(1)                                                                   <---------ICU4         <---------YAB1                                                                   --------->YAB1         <---------AHL20(2)                                                                  --------->ICU4          --------->ICU4                                                                  <---------YAB1          --------->AHL20(2)                                                                --------->YAB1          <---------ICU4                                                             ----------->GT1     <-----------GT1                                                         <---------AHL20(2)     --------->AHL20(2)                                                         --------->AHL20(2) <---------AHL20(2) ---------AHL20(2)                       --------->ATHB12<---------YAB1    <---------AHL20(1) ------->GT1                            <---------YAB1   --------->AHL20(1)--------->AHL20(1) <------ ->YAB1                      <-----------GT1    --------->YAB1 <---------YAB1   <---------AHL20(2)  - ->ATHB12          <---------YAB1  <---------At4g35610  --------->AHL20(2)<---------AHL20(2) <-------   agttaaatgtttgagtttgctatttttgttttaactgagcttatgatttatcacaaaattttattgttataattatatatatttaactaaaaattattac  11230300                                                                            --------->AHL20(2)                                                                 <---------AHL20(2)                                                             <---------AHL20(2)                                                            <---------ARR11(3)                                                            <---------AHL20(2)                                                            --------->AHL20(2)                                                            --------->AHL20(1)                                                     ----------->GT1        <---------AHL20(2)                                                    <---------TOE2(3) <-----------GT1                                              <---------AHL20(2) --------->AHL20(2) -----GT1                                     <---------YAB1<---------AHL20(1) ----->ZmHOX2a(1)                          <---------DAG2   --------->ARR11(3)                  <---- --YAB1                                    <----------DOF2 --------->AHL20(2)         --------->YAB1   tccttaccaaaaaaaaactaaaaactattactagctaaacaaatactttttattgatgtaaatatatttaaattacatttttttatattcagaatataac  11230400                                                                                    <---------At4g35610                                                                                   ------>NtERF2                                                                                 --------->At4g35610                                                                                 --------->ATERF1(1)                                                                                 <---------At4g35610                                                                                 <------NtERF2                                                                                 <---------LBD16                                                                                <---------RAP2.3(1)                                                                                <---------ERF1                                                                              --------->ATERF1(1)                                                                              =======================                                                                              ----------->RAV1(2)                                                                             <---------RAP2.3(1)                                                                             <---------ATERF1(1)                                                                             <---------MYB46(3)                                                                            <---------DEAR3(1)                                                                           <------NtERF2                                                                           --------->ATERF1(1)                                                                           --------->At4g35610                                                                           <---------At4g35610                                                                          <---------ATERF1(1)                                                                         <-----------RAV1(2)    <----                                                                         <---------DEAR3(1)    ------                                                                        <------NtERF2<---------DEAR3(1)                                                                        --------->ATERF1(1)    ------                                          <---------------------WRI1    <---------At4g35610  <-------                                          <------NtERF2                <---------RAP2.3(1)   --------                                         ------>NtERF2                <---------ANAC58 <---------At4g35610                                        <---------DEAR3(1)            <---------ANAC58 <------NtERF2                                        <---------ANAC46              <---------ANAC46<---------ATERF1(1)                                        --------->DEAR3(1)            <---------RAP2.6(2)    <-------                                       <------NtERF2               <xxxxxxxxxxxxxxxxsmallRNA(i)------                                       --------->ATERF1(1)       <---------MYB46(3)<---------RAP2.3(1)                                      <---------RAP2.3(1)      <---------LBD16--------->ZAT2<--------                                     xxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------RAP2.3(2)  <---------DEAR3(1)                                     <---------DEAR3(1)      xxxxxxxxxxxxxxxx>smallRNA(i) ===========               <---------ICU4        <---------RAP2.6(2)     --------->TOE2(2)--------->At4g35610           ---------->DOF2          <---------At4g35610      --------->TOE1(2)<---------At4g35610          --------->AHL20(2)        --------->At4g35610     xxxxxxxxxxxxxxxx>smallRNA(i)<---------ANAC46     --------->AHL20(2)         --------->YAB1          <xxxxxxxxxxxxxxxxsmallRNA(i)--------->ATERF1(1)   ----------->GT1             <---------YAB1        ---------->DOF2 <---------LBD16<------NtERF2 ===  --------->DAG2               <---------TOE2(3)<---------MYB52(2)<-------GAMYB <---------ATERF1(1) ---------->DOF2         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxx>smallRNA(i)----------- -----------AGL15   <---------ANAC55(2)--------->RAP2.3(1)  ----------->RAV1(2)<---------DEAR3(1) ---   taaaaaagtaaataaaagaattacatgaaaattatcgtagcggcgtcgaaacgaacaaagaaacctgcggttgcggcagcggctgcggcagcgtctgcgg  11230500                                                              ------->GAMYB                                                              --------->DEAR3(1)                                                              --------->DREB2C(2)                                                              --------->ANAC46                                                              --------->ANAC58                                                             <------------AtMYB77                                                             <---------MYB55(2)                                                         ------>NtERF2                                                         --------->LBD16                                                        --------->RAP2.6(2)                                                        --------->ANAC58                                                 --------->MYB46(3)                                                 --------->ATERF1(1)                                                <---------At4g35610                                                --------->At4g35610                                                ------>NtERF2--------->MYB46(3)                                     <------NtERF2      --------->ANAC58                                     --------->MYB46(3) --------->ANAC46                                    ------>NtERF2--------->RAP2.3(1)                                   --------->AtMYB61    --------->RAP2.3(2)                                   --------->DEAR3(1)  <XXXXXXXXXXXXXXXXXXXXXXXMIR404                                   <---------ALFIN1    --------->RAP2.3(1)                                  <------NtERF2--------->DEAR3(1)                                  --------->MYB46(3)  ------>NtERF2  --------->TOE2(3)                                  ----------->HVH21   <---------ATERF1(1)                                  --------->ATERF1(1) --------->At4g35610   --------->MYB52(1)             --------->ERF1<---------ATERF1(1)<------NtERF2 =========RAV                    <---------ATERF1(1) --------->DEAR3(1) --NtERF2                       --------->DEAR3(1)  --------->ATERF1(1) --->LBD16                      --------->RAP2.6(2)----------->RAV1(2) --->RAP2.6(2)  --------->TOE2(2)<---------RAP2.6(3)xxxxxxxxxxxxxxxx>smallRNA(i) --LBD16       ----------->RAV1(2)<---------ABI4(2)<---------ATERF1(1)                              < ->At4g35610  -------->P <---------ZAT6      <---------At4g35610 --------->DEAR3(1)               <-- --At4g35610<---------MYB111(2) --------->ATERF1(2)<---------At4g35610   <---------TOE2(3)      <---- >NtERF2    --------->MYB46(3)  --------->ANAC46<---------ZAT2--------->ANAC58               -------- -ATERF1(1)<xxxxxxxxxxxxxxxxsmallRNA(i)      --------->LBD16 --------->DEAR3(2)              *TSS<--- =========RAV------->GAMYB      <---------ATERF1(2)--------->At4g35610--------->DOF5.7(2)    <------- ==========================RAV <---------RAP2.6(2)--------->DEAR3(1) <----------DOF2        --------- >RAV1(2) <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxsmallRNA(i)------>NtERF2   ------->TEIL------- -------->RAV1(1) <---------LBD16------>NtERF2--------->ERF1<---------ATERF1(1)<---------MYB52(2)----   caacaaaacgaacaacaacctgcggtagtgtttgccgccaccgctaccgcagccgctgccgcaaccgccagcgttaatgaaacgaacatgctaaatatat  11230600        <---------HSFB2a(2)        --------->HSFB2a(2)  <---------AHL20(2)                                                                      <---------ICU4 ---------AHL20(2)                         --------->CCA1(2)                       <---------AHL20(2) -------AHL20(2)    --------->At5g28300   --------->ARR11(3)                       --------->AHL20(2) -----AHL20(2)     ----------->GT1        <---------ARR11(3)                      --------->AHL20(2) ->AHL20(1)        ------->GAMYB   <-----------TBP<-----------GT1              --------->AHL20(2) ------AHL20(1)  <---------TOE1(3)<---------AHL20(1)                           <---------AHL20(2) --AHL20(1)     --------->MYB52(1)--------->AHL20(1)                           <---------AHL20(1) >AHL20(2)---------->DOF2    ------------>CBF<-----------TBP     --------->ANAC55(2)    <-----------GT1 -->AHL20(2)  --------->DOF5.7(2) <---------ARR11(3)         <---------DAG2    --------->AHL20(1) ----->AHL20(1) <---------DOF5.7(2)--------->AHL20(2)    <------ZmHOX2a(2)    --------->AHL20(2)   atatttttttccaaaagttaacggtaaataactcaatatatatagatatatataactcgatcaccttacttatttatctaataaatttataaacattact  11230700                                                       <---------ANAC46                                                       <---------ANAC55(2)           <---------ICU4               ----------->GT1                       --------->MYB52(1)          <---------YAB1     --------->LBD16                              --------->ANAC58               --------->AHL20(2)     ----------->GT1                              <---------ANAC55(2)            <---------AHL20(2)     ------>ZmHOX2a(1)                            --------->ANAC55(2)           --------->AHL20(2) <---------ARR11(3)                               --------->ANAC58              <---------AHL20(2) --------->ARR11(3)                             --------->MYB52(1)             --------->YAB1 --------->ARR14(2)                         --------->ZAT6------->TEIL   --------->ANAC58 <---------ARR14(2)                    <----------DOF2 ----------->GT1   --------->ANAC58      <-----   caatatcctgaaaaattgagttaaactagtcatgaactagtctttaacagtaacgtaacgtatataagtagaagcactcaattttaattagttctattga  11230800                                                                                                    <                                                                                           ------>MYB83                                                                                           ------>MYB46(1)                         <-----------GT1                                                 <---------MYB59                         --------->ANAC46              <----------DOF2           <---------YAB1   <-- ----AHL20(2)          <-----------GT1               ---------->ID1        <---------MYB52(1)    <---   atttgttatcttcgttctatccattttacaccatttatcttactcgttttgttttgtctttttataaaacttactcggtttttttgataaacctaactcc  11230900                                                                                              -------                                                                                              -------                                                                              <---------MYB52(1)                                                                            <---------ANAC58  <------                                                                            <---------ANAC58  -------                                                                         <---------ARR14(2)   <------          <---------AHL20(2)                                             --------->ARR14(2)   -------       ----------->GT1                                           <-----------GT1              <------    --------->MYB52(2)      <----------DOF2                  <---------AHL20(2)              --------  <--------P                <---------DAG2                   --------->AHL20(1)      --------->ZAT6 ---------MYB46(3)         <---------ANAC58                  --------->AHL20(2) <---------MYB46(3) -------MYB52(1)           <---------ANAC58                  <---------AHL20(1) --------->MYB52(2) -------DOF2       <---------TOE1(2)                  <-----------GT1   <---------MYB52(1)   <-------   tttggttagtagttaatttccttcgttttgcttttccaattctatgcatattgttttaaccattttattactccgtttccgtttgtttcactacaattat  11231000  --------->At4g35610  <---------At4g35610 ->ATHB1 -->AHL20(2) ---AHL20(2)                                                                       ----------->GT1 -->ATHB51                                                                      <---------ARR14(2) --HAHB4                                                                        --------->ARR14(2) -->ATHB12                                                               --------->WRKY38(1) ---ICU4                                     <---------GLK1(2)           ----------->HVH21 ->ICU4      <---------ZAT14               <---------YAB1                --------->WRKY12 --ATHB51    --------->ZAT14       <-------TEIL                        <----------DOF2      <--------   ttggagctacagtactacagtagtatatagttctatgttcatatcaagattgtcttcttgggaaacacttgccctttgactggatttgttatattaaaaa  11231100  Previous    Next  AGI:  At1g31358.1    Description:  MIR404; miRNA Range:  from: 11230444    to: 11230593    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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