Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                         --------->TOE1(3)                                                                       --------->TOE2(3)                                                         <---------YAB1--------->YAB1                                                         <------ZmHOX2a(2)                                                        --------->ARR11(3)                                                        <---------ARR11(3)                                                    ---------->DOF2 --------->YAB1                                               ------>MYB46(1) <---------TOE2(3)                                               ------>MYB83--------->TOE2(3) ---->ZmHOX2a(1)                  --------->YAB1  --------->YAB1--------->ZAT6 ----->ID1                     --------->WOX13(1)<---------ATHB12--------->YAB1 --DOF2                --------->YAB1        <---------MYB59  --------->YAB1     <---------ATHB12   cctgttttcatcaaatcccatccattcataaaccaattagaagaagaccaaatcaaaagatcattaacaataatcttaatccaatcttcttaaactcaga  11219000                                                                    --------->ANAC58                                                                    --------->ANAC58                                                            --------->ANAC58                             --------->TOE2(3)              --------->ANAC46               --------->ANAC46          --------->TOE2(3)  <---------ANAC55(2)               --------->ANAC58      --------->ZAT14        --------->ANAC58               --------->ANAC58      --------->ZAT18        --------->ANAC55(2)                 <----    <-----------GT1          --------->TOE1(3)           --------->ARR14(2)        <------ZmHOX2a(1)  <---------MYB52(2)  <-----------GT1<---------ZAT18     <---------ARR14(2)      <---------TOE2(3)   aacaattaaccattctcaagcaattcacataccttcaagtgtaccataaaacataaacaaatacgaaattaagcaaacacatgaaggattaagagagcct  11219100                               --------->TOE1(3)                               --------->TOE2(3)                             --------->ARR11(3)            ---------->DOF2                      -----                             <---------ARR11(3)         --------->LBD16                         -----                            <---------GLK1(1)          <---------LBD16                 --------->ANAC58       <---------ZAT6       --------->GLK1(1)         <---------LBD16          <---------ATHB12 -----  <---------ANAC58     ---------->DOF2              --------->GLK1(2)        --------->WOX13(1)------  <---------ANAC58--------->GLK1(1)        ------>ZmHOX2a(2)        --------->TOE1(3)  --------->ANAC58 ------DOF2   --------->ANAC46 --------->YAB1    <---------ARR11(3) --------->TOE2(3)---------->DOF2   ttgtgcttactgttacacagaaatctaaagaaatcttaacatcgatcgctagataatcggggaaagaaaacctaaaaatcaatcaaacaaagcaaaccaa  11219200                                                           <-------PIF5                                                      --------->ANAC58                                                      --------->ANAC58                        --------->YAB1              ---------->DOF2                       <-------TEIL            ------>ZmHOX2a(1)          --------->MYB46(3)                  --------->TOE2(3)   --------->ALFIN1 ->MYB83----------->RAV1(1)                --------->GLK1(2)  <------ZmHOX2a(1) ->MYB46(1)--------->WOX13(1)             <---------GLK1(2)------->PIF5                     --------- ---->GLK1(2)<<<<<<<<<ARR2    --------->ZAT18 --------->TOE2(2)<---------AtMYB61    ---------->DOF2 --->WOX13(1)<---------ATHB12 <---------ZAT18 --------->TOE1(2)--------->ALFIN1----------------------   tctgtgtctccaacaatcaaacaaattcatagtgcaaaaccctagaatcctaagaaaagcacgaggaggtggaattgggagacggagaaagagagaaaga  11219300                                                                                                <----                                                                                         ------>ZmHOX2a(2)                                                                                        --------->CCA1(2)                                                                                        <------ZmHOX2a(2)                                                                                       --------->ARR14(2)                                                                                       <-----------ARR10                                                                                       <---------AGP1                                                                                       --------->AGP1                                        <----------DOF2           <---------LBD16      --------->ARR14(3)                                   <---------At4g35610    <---------YAB1               <---------ARR14(3)                                <-----------HVH21         <---------TOE2(3)            <---------ARR14(2)  --------->TOE1(3)            <-----------RAV1(1)        <---------TOE1(3)      <---------TOE2(3)  --------->TOE2(3)      --------->ETT(2)            <---------ZAT6   --------->ALFIN1 <---------ARR11(3) ->DOF2         ----------->HVH21<------NtERF2      <---------TOE1(3)<---------MYB52(1)--------->ARR11(3) -->ANAC81    <----------DOF2  <---------REM1(1)  --------->STY1(1) --------->LBD16  ----------->ARR10   gaaacctgaattttggctttgacattgtcgatggtgtcgctgctttcgacctctagggttatggtttttccggtgagggttttgacgaagatctgcattt  11219400                                                                         <---------AHL20(2)                                                             --------->AHL20(2)                                          <---------SPL7     <-----------TBP                                         <---------ANAC55(2) <---------AHL20(2)             --------->At4g35610        <---------LBD16    ----------->TBP             <---------At4g35610      <---------YAB1      <---------AHL20(2)                    -----      <----------DOF2              <---------YAB1        --------->AHL20(2)        --------->CCA1(2)   <-----------GT1                 <---------AHL20(2)   <---------YAB1  <---------AHL20(2)      -----   ---------->ID1               ------->TEIL        ----------->GT1     --------->AHL20(2)      <----  <-----------GT1            <---------YAB1        --------->DAG2       --------->AHL20(1)     <----- -----AHL20(2)         <---------ANAC46*TSS       ---------->DOF2       <---------AHL20(1)   <-------   tttttttcctttcttcgctgaaatggtgtttatgaatattattacggacgggaaaagtattatatatatacaaataaaatttgggatatagttttgagga  11219500       --------->AHL20(2)--------->CCA1(2)      --------->YAB1    --------->ARR11(1) ---->ARR11(3)          --------->ARR11(3)         <---------ANAC55(2)          <-----------GT1 ---->ARR14(2)          <---------ARR14(2)         ----------->GT1     --------->ANAC46 -----ARR14(2)          --------->ARR14(2)         --------->ANAC55(2) --------->ANAC58 -ZmHOX2a(1)  <---------DAG2           <----------DOF2                 --------->ANAC58            -- --TOE2(3)    <----------DOF2          ------>ZmHOX2a(1)     <----------DOF2<---------YAB1         <-   ttttggaataaaaatactttttgaaagatttggaataaatcctttgatagaattcgtaattagcttttgggctacgctattatttcttctccatttctta  11219600                                                       --------->AHL20(2)                                                    <---------ANAC58                                        --------->ARR11(3)  <---------AHL20(1)                                        <---------ARR11(3)  --------->AHL20(2)                                        <---------AHL20(1)  --------->ARR11(3)                                        --------->AHL20(2)  <---------AHL20(2)                      <                                        --------->AHL20(1)  <---------ARR11(3)                      <                                       --------->AHL20(2)   --------->AHL20(1)                  <----                            --------->TOE2(3)       <---------ANAC46   <---------AHL20(2)       <----                            <----------DOF2    <-----------RAV1(1)   <---------CCA1(1)         ------                          <---------YAB1<---------AHL20(2) --------->AHL20(2)                  <-----               --------->YAB1 --------->AHL20(2)    <---------ANAC58 <---------RVE1(1)        <------ZmHOX2a(1)     <-----------GT1     <---------ARR11(3)   <---------TOE2(3)     --------->ARR11(3)      <-------- ------->AHL20(2)        --------->ARR11(3)<---------AHL20(2)     <---------TOE2(3)<---------MYB46(3) --------AHL20(2)    <---------ICU4--------->AHL20(2)<----------DOF2<---------ARR11(3)  <---------YAB1   tataattttactaacaattttaaaaattatctttaaatcaaatatattaatgtggctttaaatatattgagatttttttgtttgtttgttattttaggat  11219700    <----------DOF2 <-----------GT1 -----------GT1 ---------AHL20(2)                          --------------->AGL15         --------->CCA1(2) -----CCA1(1)                      --------->ARR11(3)                    <---------ARR14(2) -----RVE1(1)                      <---------GLK1(2)                  --------->AHL20(2) --->ARR11(3)         ---------->DOF2       <---------------AGL15   <---------TOE2(3) ----ARR11(3)       --------->AHL20(2)--------------->AtSPL8  <---------ARR11(3) -TOE2(3)           <---------AHL20(2)<---------------AtSPL8  --------->ARR11(3)           <---------AHL20(2)   atttaacttttaaaaacaaaaattaaaagagtttttagattttgtactaaaattagttttcttagattttaagaaaatatggggacattgaatttttttt  11219800                                                                            ------>MYB83                                                                            ------>MYB46(1)                      <----------ID1                               <---------ZAT18    --------->HSFB2a(2)                                    <---------ARR11(3)    <---------HSFB2a(2)                       <-----------RAV1(1)  --------->ZAT18   ttagttttagaaccaaaaacgaaaacaacaaattgttgacattcaattttgttggaatctagagcttagtgcaaaacccactagtctctacatactatgg  11219900  Previous    Next  AGI:  At1g31340.1    Description:  RUB1 (RELATED TO UBIQUITIN 1). Identical to NEDD8-like protein RUB1 precursor (RUB1) [Arabidopsis Thaliana] (GB:Q9SHE7;GB:Q0WQU3); similar to UBQ7 (RELATED TO UBIQUITIN 2) [Arabidopsis thaliana] (TAIR:AT2G35635.1); similar to Os09g0420800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063199.1); similar to polyubiquitin 2 [Deschampsia antarctica] (GB:AAM22748.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) Range:  from: 11217826    to: 11219439    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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