Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                              --------->HSFB2a(2)                                                                            <---------HSFB2a(2)                                                                           <-----------GT1                                                                     <------MYB83                                                                     <------MYB46(1)                                                                    <---------AtMYB61                                                                   <---------MYB55(1)                                                                  <---------MYB52(1)                                                                <---------ANAC46                                                                <---------ANAC58                     --------->DAG2                             <---------ANAC58                    ---------->DOF2                          --------->TOE2(2)              ----------->GT1                                --------->TOE1(2)   ------>ZmHOX2a(2)        --------->HSFB2a(2)                                 --------->HSFB2a(1)<---------AGP1        <---------HSFB2a(2)                                 <---------HSFB2a(1)--------->ARR14(2) ----->DOF2 --------->ZAT14       <---------TOE2(3)         ----------->RAV1(2)<---------ARR14(2) -ZmHOX2a(1)<---------ZAT14   <----------DOF2              ------->TEIL<<<<<<<<<MYB2   aagctctgtttcagaacagagaaaaagctctggtttaacgaagaaatagaaatggaagacgaacctgcgtttggttttctcgatctgagcattgagagca  11215600             <-----------RAV1(2)            <-------TEIL           --------->GLK1(2)          --------->ARR14(2)                               <---------ANAC58          <---------ARR14(2)                               <---------ANAC58         --------->At4g35610                          <-----------RAV1(1)                    <-------        ----------->ARR10                            ------>ZmHOX2a(2)                     --------->AtLEC2    ------->PIF5   <---------ANAC46                <---------AGP1  <----------DOF2        ------>ZmHOX2a(1)    <-------PIF5<------ZmHOX2a(1)      <-------TEIL<---------ARR11(3)     --------->ZAT18<---------ANAC58 <-----------RAV1(2)<---------ZAT14   --------->CCA1(2) <---------MYB52(1)<---------ZAT14<---------ANAC58   agagcaggggcagattcaggagcgtagagcttaagagaagattcaagcttcttgatctgttgcttctctcttttagcgaactgttttgagtccttgcaag  11215700                                                                       <------NtERF2                                                                      --------->LBD16                                                                     <---------ANAC46                                                                     <---------DEAR3(1)                                                                     <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                    --------->At4g35610                                                                    <---------ABI4(1)                                                                    <---------At4g35610                                                                    <------NtERF2                                                                    --------->ATERF1(1)                                                                    <---------LBD16                                                                   <---------RRTF1(1)                                                                   <---------ATERF1(1)                                                                   ------>NtERF2                                                                   <---------DEAR4(2)                                                                   <---------RAP2.6(1)                                                                   <---------ORA47(2)                                                                   <---------RAP2.3(1)                                                                   <---------ERF1                                                                  --------->DEAR3(1)                                                                  <---------DREB2C(2)                                                                  <---------RRTF1(2)                                                                  <---------DEAR3(1)                                                                  <---------RRTF1(3)                                                                  <---------RAP2.3(3)                                                                  <---------ATERF1(2)                                                                  <---------RAP2.6(2)                                                                  <---------RAP2.3(2)                                                                 <---------ABI4(1)                                                                 <------NtERF2                                                                ------>NtERF2                       --------->At4g35610                      <---------ATERF1(1)                       <---------At4g35610                      <---------RAP2.3(1)                       <---------ZAT2                           <---------RRTF1(1)                     <-----------RAV1(2)                        <---------ERF1                   ================RAV                          <---------DEAR4(2)                   ----------->RAV1(1)                         <---------RAP2.3(2)                  ----------->HVH21                            <---------DEAR3(1)                 --------->At4g35610                           --------->O2            <---------GLK1(1)                                 --------->ATERF1(1)            --------->CCA1(2)                                 <------NtERF2            --------->GLK1(1)      <---------At4g35610       <---------ATERF1(1)                <----           --------->ARR11(3)    <------ZmHOX2a(1)           ------>NtERF2---------->DOF2       -----      --------->TOE2(2)--------->ZAT2                       <---------DEAR3(1)                <------      --------->TOE1(2)----------->RAV1(2)    <------ZmHOX2a(1)<---------O2                 <--------     ----------->RAV1(2)   <------NtERF2   <------ZmHOX2a(1)--------->ETT(2)      <---------AtLEC2     ==========================RAV --------->At4g35610      ----------->HVH21  <----------DOF2------- --AtLEC2  <---------ARR11(3) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)--------->ATERF1(1)       <---------TOE2(3)   gagtcaaacctgagatatcagcgacagctggcataggagcagagaggaggatggaagagagggcgacggcggcggagaaagctttcatggattgaggtgt  11215800                                             <---------------AtSPL3                                             <---------TOE2(3)                                             --------->MYB59                                             <---------------AtSPL8                                  <---------LBD16 --------->ANAC55(2)                               -                             <---------ARR11(1)   --------->ANAC58                                  -                             <---------ARR14(2)   <---------ANAC55(2)                              --        <---------ARR14(2)   ------->TEIL<---------ARR14(2)                       <--------P       <-       <------ZmHOX2a(1)     --------->GLK1(2)    --------->ANAC58           <---------LBD16   <-----    <------ZmHOX2a(1)--------->ZAT2 --------->LBD16                         ------>ZmHOX2a(2) -------  --------->ALFIN1   <---------ZAT2<---------ANAC46                        <---------GLK1(1)  ------- <------ZmHOX2a(1)   --------->At4g35610 --------->ARR14(2)                <------ZmHOX2a(2) <------- -----AtMYB61        <---------At4g35610<------ZmHOX2a(1)<---------ANAC58 --------->ARR11(3) -------- ---->ALFIN1    --------->At4g35610<---------ANAC58      <---------ANAC46 <---------ARR11(3) -------- ---ANAC46      <---------At4g35610<---------ANAC58      <---------ANAC58 <---------AGP1     <------- -ANAC46--------->ARR14(2)   --------->ARR14(2)  <-------TEIL            <---------CCA1(2) ---------- -->ALFIN1  <-----------HVH21<-----------ARR10 <---------SPL7  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <--   ggaggaggaggatttgtcatcggagcagacgaatcttgcggaggatttaggtacggattgagtgagagatttgttagatctcgggttgagaacgagattc  11215900 <------NtERF2 ----->NtERF2 -------->LBD16 ------->LBD16 --------LBD16 --TEIL                                                                      --------->ALFIN1 -->CCA1(2)                                                              <---------ZAT14 -->ARR14(1)          <----------DOF2                                 <---------ANAC58 --GLK1(2)    --------->O2 --------->ETT(1)                           <---------ANAC46 ->ARR11(1)   <---------O2 <---------ANAC46                           <---------ANAC58 ->ARR14(2) ----------->RAV1(1)           --------->GLK1(1)         <---------ANAC46 --ARR14(2)----------->HVH21             --------->ARR11(3) --------->HSFB2a(2) --------->REM1(2) ->ARR10  --------->At4g35610     <----------DOF2        <---------ARR14(2)<---------ANAC46 -------LBD16 <---------bZIP60(2) --------------------->WRI1<---------HSFB2a(2)--------->ALFIN1     <   gccgggatagtgagcgacatggcgctttgtcgggttctttggagatttcgaattctagggttctggagttttgggtgaagtgtggagagaagacttatgg  11216000                                                                                     <------MYB83                                                                           --------->ALFIN1                                                                         <---------bZIP60(2)                                                                         <---------ANAC55(1) --------                                                                         <---------ANAC58    <-------                                                                         <---------ANAC58    --------                                                                         <---------ANAC46    --------                                                                        <------NtERF2<---------MYB46(3)                                                                      <---------DEAR3(1)     --------                                                                      --------->ALFIN1 <---------WOX13(1)                                                                    <---------bZIP60(2)<--------P                                                              ----------->HVH21    <---------WOX13(1)                <---------ANAC46                              --------->ALFIN1    <------------CBF          --------->GLK1(2)                                 <---------ANAC58     --------->ATHB12         <---------GLK1(2)                --------->CCA1(2) <---------ANAC58    <---------YAB1    <----------DOF2                  <------ZmHOX2a(1)      <---------ANAC46  <---------ANAC46  <---- ------ZmHOX2a(1) *TSS       <---------ANAC46      --------->ALFIN1<---------AtMYB61 <------MYB46(1)-   gaggagctttagattcttgaggggattagtggagggagaggaagataagagaagtggtcttggggtgatgaggtggcgtgttgtgattggttgataagta  11216100                               --------->AHL20(2)                               <---------AHL20(2)                            --------->ARR14(2)                            <---------ARR14(2)                          --------->LBD16                                   --------->ANAC46                         <------NtERF2                                      --------->ANAC58                        <---------At4g35610                                 --------->ANAC58                        <---------LBD16                                   --------->ANAC46                        --------->LBD16                                <---------ZAT14                        ------>NtERF2                                  <---------REM1(2) <-----------HVH21     <---------ANAC46                                --------->ZAT14 ->ANAC58             <---------LBD16                             <---------ZAT18                ---- --ANAC55(2)          <---------RAP2.6(2)                         --------->ZAT18             <------ --->GT1        <---------ARR11(3)                           --------->CCA1(2)              --------- ->ANAC58       --------->ARR11(3)                          <---------ARR14(2)              <-------- ->ANAC55(2)    <---------GLK1(2)                           --------->ARR11(3)             <---------AHL20(2) -------GT1    <---------RVE1(1)<---------YAB1--------->ICU4<---------ARR11(3)         <---------AHL20(2) -------->bZIP60(2)  <---------At5g28300   ---------->ID1   --------->ARR14(2)       <----------DOF2   acatgtcactggataagagattttgccgcggattttaatagttttgtcattttgatgttcaagatatgtggactacacacgacttatcttttatttattt  11216200                                             --------->AHL20(2)                                             <---------AHL20(2)                                           --------->AHL20(2)  <---------ARR11(3)                       <---------AHL20(2)  --------->ARR11(3)                     <---------AHL20(2) ----->AHL20(2)                          --------->AHL20(2)                             --------->ICU4 ---YAB1                               --------->AHL20(2)                               <---------YAB1 >AHL20(2)     <---------AHL20(2)  --------->YAB1     ----------->GT1   <---------REM1(1)--------->ATHB12 -AHL20(2)    --------->AHL20(2)--------->YAB1 <---------AHL20(2)---------->DOF2        ------>ZmHOX2a(1)   ttaatatctatacatattatatatacactgaaaataatcatatatatatatatatgtagcaaaaaaaaaaagagatgtagttttttagtcctgattagtt  11216300                                                          ------->GAMYB                                                         --------->MYB46(3)                                                       <-----------GT1                  --------->ATHB12                 <---------MYB46(3)          --------->YAB1 <------                 <---------YAB1                --------->ATHB12               <------ZmHOX2a(2)                 ------>ZmHOX2a(1)            <---------AHL20(2)             --------->ARR11(3)                 --------->ICU4             <----------DOF2       --------->YAB1 <---------YAB1 -----   ttttttttggcaaatagtcctgattagtaagactgcaaaattgagtcttttattggttaaccacataataagaaaatgggatcatgagtttgcaatatca  11216400                                                                 <------NtERF2                                                                --------->LBD16    <---------AHL20(2)                  <-----------GT1         <---------SPL7   --------->AHL20(2)            --------->At4g35610          <---------LBD16   <---------AHL20(2)        --------->TOE2(3)               --------->LBD16            --------->ICU4 ---YAB1                    <---------ICU4                   ------>NtERF2  --------->REM1(1) ----->DOF2             --------->AHL20(2)       ------>ZmHOX2a(1)   <------ZmHOX2a(1)  <---------YAB1   aagaattaaatctatatatgaccaaaataaacattagcagaattacaactccttctaccattccgccggaaggaggctacattttttgtaatgtttgttt  11216500  Previous    Next  AGI:  At1g31330.1    Description:  PSAF (photosystem I subunit F). similar to unknown [Populus trichocarpa] (GB:ABK96023.1); contains InterPro domain Photosystem I reaction centre protein PsaF, subunit III; (InterPro:IPR003666) Range:  from: 11214805    to: 11216018    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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