Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                  ----------->GT1                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                      --------->YAB1 ----------->GT1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                   <-----------GT1 ---------TOE1(3) ----------->GT1          <-----------GT1                           <---------ICU4 -------->MYB59xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)               <---------ANAC46  <---------AHL20(2) ---------TOE2(3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ------DOF2  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          <---------AHL20(2)      --------->AHL20(2) ---TOE1(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      --------------->AGL15       --------->YAB1 ---->AtSPL8xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     <----------DOF2         --------->LBD16 -------   tttaggtaaaacaacttatattgtgaaacggagggagtatatcatttacaatttctctttatttagttttgtggtgattccgaatattaattacaacttg  11212600                <---------ARR14(2)             --------->TOE2(3)                                                  <---------AHL20(2)             --------->YAB1                                                     --------->AHL20(1)          <-----------GT1                                            ----------->GT1    <---------AHL20(2)                                          --------->YAB1  --------->AHL20(2)    --------->AHL20(2)          ---------->DOF2         ---------->DOF2        --------->AHL20(2)   --------->AHL20(2)        --------->TOE2(3)      <----------ID1  ----------->GT1           ------- -------->AtSPL8--------->ARR14(2)              --------->MYB52(1)---------->DOF2            <-------   taccatttaattcaaccatattcgaagaaaacattaaaggcaaaacaaattaaggggaaaaagaaatcaaaagttaaaaaaaaaaattaagaccaatgag  11212700                                                                                         ----------->GT1                                                                                     ------->MYC3                                                                                     <-------MYC3                                                                                    <---------ANAC55(2)                                                                                    --------->TGA1a                                                                                    --------->bZIP60(1)                                                                                    <---------O2                                                                                    <---------TGA1a                                                                                    --------->bZIP60(2)                                                                                    <---------ANAC46                                                                                    =================                                                                                    <---------bZIP60(1)                                                                                    --------->O2                                                                                    --------->ANAC55(2)                                                                                  <-------------DYT1                                                            ----------->GT1      ----------->HVH21                                                           --------->DAG2       <-----------HVH21              <----------ID1                              ---------->DOF2      <---------bZIP60(1)            ---------->DOF2                               ====================================bZIP_DOF     --------->DAG2  --------->DAG2                    <------NtERF2           --------->bZIP60(2)   --------->CCA1(2)---------->DOF2                   ------>NtERF2            --------->bZIP60(1)  < -->YAB1----------->GT1                              <----------ID1            --------->O2        <- --ATHB12--------->At5g28300        <----------ID1  ---------->ID1         <-----------HVH21    <----   aatagataaggggtaaaagacaaaaagagaatataaaaaaaacaaatagcatttggcgccaaaagtaaaactaaaatggtcatgtcacgtgatgttaatt  11212800             --------->ANAC58                      <---------ALFIN1          <---------AHL20(2)             --------->ANAC58                   <---------TCP15(1)    <----------DOF2           -----           ---------->DOF2                      --------->PCF2  <---------At4g35610             <---- =====================bZIP_DOF                  <---------TCP20 --------->At4g35610            <----- ---------------------WRI1            <---------CCA1(2)    <---------At4g35610            ---------->ID1 ----------GT1           --------->TOE2(3)     <---------PCF2  --------->ALFIN1      <----------DOF2 -----ICU4--------->AtMYB61---------->DOF2 <---------LBD16 --------->At4g35610    <-----------GT1   tttgctctacgaccaaagcaaaacaaacctaaagttttccaaatctctgggtcccactctcagatgtgctgacttttattttttttacttttgtcttaaa  11212900                                                                           --------->ANAC46                                                                         <---------ALFIN1                                                                      ----------->HVH21                                  <---------CCA1(2)                  <-----------HVH21                                  <---------At4g35610               <---------ANAC55(2)                           --------->AHL20(2)                       --------->ANAC46                           <---------AHL20(2)                       --------->ANAC55(2)             <                          <---------AHL20(1)                       ------>ZmHOX2a(2)              <--                          <---------AHL20(2)                      <------ZmHOX2a(2)               ---                      --------->AHL20(2)                         --------->AGP1                   ---                      <---------AHL20(2)                         --------->ARR14(2)               *TSS                     <---------AHL20(1)                          <---------ARR14(2)             <----         <-----------GT1  --------->AHL20(2)                     <---------GLK1(2)            <------ ---->ARR11(3)       <---------AHL20(2)                     ----------->RAV1(1)               XXXXXXX -----ARR11(3)       --------->AHL20(2)             ----------->TBP<-------TEIL               ------- ----CCA1(2)     <---------AHL20(2)     <----------DOF2     <---------ALFIN1                  XXXXXXX   tctttggaaattttcagttttaatttaatttaattcatctctctttctcactctataaatccccacagatccgtcacacttcacctagagaccctcccac  11213000                                                                              <---------ANAC46                                                                             <------NtERF2                                                                            ------>NtERF2                                                                           <---------RRTF1(2)                                                                           <---------RAP2.6(2)                                                                           --------->ATERF1(2)                                                                           <---------RRTF1(3)                                                                           <---------RAP2.3(3)                                                                           <---------ATERF1(2)                                                                           <---------ANAC46                                                                           <---------DREB2C(2)                                                                           <---------RAP2.3(2)                                                                           <---------DEAR3(1)                                                                          <------NtERF2                                                                        ----------->HVH21                                                                        --------->ALFIN1                                                                       -------->ABF1                                                                       <-------MYC2                                                                       ------->MYC2                                                                       <-------PIF5                                                                       ------->PIF5                                                                       ------->MYC3                                                                       <-------MYC4                                                                       ------->MYC4                                                                       <-------MYC3                                                                      --------->O2                                                                      >>>>>>>>>>ABI5                                                                      >>>>>>>>>>AtMYC2                                                                      --------->TGA1a                                                                      >>>>>>>>>>HY5                                                                      ============================bZIP_DOF                                                                      <---------TGA1a  ---------->DOF2                                                                      <---------bZIP60(2)                                                                      --------->ANAC55(2)                                                                      ============================bZIP_DOF    --------->HSFB2a(2)                                               <---------ANAC55(2)    <---------HSFB2a(2)                                               <---------O2 --------->At4g35610 ----------DOF2                                           <---------ARR14(2)<---------RAP2.3(1) -------At4g35610                                         --------->ARR14(2)<---------ERF1 ------>ZAT2                                             <---------CCA1(2)<---------ABI4(1) ------>At4g35610                          --------->HSFB2a(2)    ----------------->PIF3(1) -----ALFIN1------->GAMYB            --------->ARR14(2)  --------->GLK1(1)--------->ATERF1(1) ---ALFIN1  ----------->HVH21    <-------TEIL   --------->AHL20(2)<------ZmHOX2a(1)--------->CCA1(2) XXXXXXXXXXXXX>MIR396A          --------->GLK1(2)    <-----------GT1 ------------>OsbHLH66          - ---->RAV1(1)        --------->MYB52(1)    <---------HSFB2a(2)==================bZIP_DOF   ---------- XXXXXXXXXXXXX>MIR396B  <---------MYB46(3) --------->HSFC1(1) ---------->DOF2--------->ATERF1(1)  <--   agctttctcgataactgacaatccaacggttgagattcagttcttctagataaattcacatatccaaaggacacgtggcggcgagagatgaaagaaagta  11213100                                                        <---------At4g35610                                                        --------->At4g35610                                                      <---------ZAT18                                                      --------->ZAT18                                                      --------->ABI4(2)                                                      --------->ZAT14                                                     --------->ALFIN1                                                    --------->ATERF1(1)                                                    <------NtERF2                                                    <---------SPL7                                                   <---------DEAR3(2)                                                   <---------DEAR4(2)                                                   <---------MYB46(3)                                                  --------->ALFIN1                                                 --------->ATERF1(1)                                                 <---------ABI4(1)                                                 <---------------------WRI1                                                 <------NtERF2                                                ------>NtERF2                                                <---------ORA47(2)                                                <---------DEAR4(2)                                                <---------ATERF1(1)                                                <---------RAP2.6(1)                                                <---------RRTF1(1)                                                <---------RAP2.3(1)                                                <---------ERF1                                               <---------ANAC46                                               <---------RRTF1(3)                                               <---------RRTF1(2)                                               <---------RAP2.3(3)                                               <---------DEAR3(1)                                               --------->DEAR3(1)                                               <---------ATERF1(2)                                               <---------RAP2.3(2)                                               --------->ATERF1(2)                                               <---------RAP2.6(2)                                               --------->ALFIN1                                              --------->ATERF1(1)                              <---------ANAC58<------NtERF2                          --------->ZAT2     <---------ATERF1(1)                          <---------ZAT2     <---------ERF1                        <---------ZAT14     <---------RAP2.6(2)                 ----------->HVH21          <---------RRTF1(3)                                   ----                <-----------TGA1            <---------DEAR3(1)                               <-------                <-----------HVH21           <---------RAP2.3(3)                             <--------               <---------ANAC58             <---------RRTF1(2)                            --------->SPL7           --------->At4g35610<---------ANAC58<---------ABI4(1)                          ------>NtERF2           <---------ZAT2 <---------At4g35610<---------RRTF1(1)                  --------->ARR14(2)           --------->ZAT2--------->ALFIN1   <---------RAP2.3(2)                  <---------ARR14(2)   --------->ANAC58     --------->ZAT14    <---------LBD16         <---------ANAC58    <---------RAP2.6(2)   --------->ANAC58<---------At5g28300    <-----------RAV1(1)      <---------ANAC58   <---------LBD16 <------NtERF2 <---------ANAC58  --------->REM1(2)<---------DEAR3(1)  <---------ARR14(2)------>NtERF2 -------->LBD16--------->bZIP60(2)     <----------DOF2<---------ZAT14 --------->ARR14(2)--------->LBD16 >DOF2     <---------At4g35610<---------ANAC46------>NtERF2  <---------YAB1--------->ANAC46 --------- -------LBD16 <-------TEIL--------->At4g35610<---------RAP2.3(1)   <---------ANAC46 <-----------GT1   gccggaagcaaggagctgcgtcaccgtgtgctgcgtgtaagcttttgcggcggcggtgcgctcaagattgcgttttctcgccgtattttccggccgatga  11213200                                     --------->ANAC58                                     --------->ANAC58                                  --------->ABI4(2)                               <---------ANAC58                               <---------ANAC58                               <------MYB83--------->TOE1(3)                              --------->MYB46(2)                              <---------DEAR3(1)                              --------->MYB52(2)                                                   --                             <---------------------WRI1                                            <-                           <---------ZAT14 --------->TOE2(3)                                       -- --->TEIL                 <---------ZAT6   <-----------TGA1<---------TOE1(3)                       <- ---CDC5                  --------->ALFIN1--------->bZIP60(2)     <----------DOF2           >>>>>>>>>RAP2.2 -At4g35610       <-------TEIL<---------MYB46(3)          <-----------RAV1(2)             <---------ARR11(3) >At4g35610   <---------TOE2(3)<------MYB46(1)      <---------ARR11(3)                    --------->ARR11(3)   gcctcagaaatttgctaatgttcatagagtgttcggtgctagcaacgtcaacaagatgcttcaggtttctttcttcttgttcttcttaagaatatctaaa  11213300                          <---------AHL20(2)                          --------->AHL20(2)                      <------MYB83                      <------MYB46(1)                                                              <-                      ----------->GT1                                                              <-                     <---------AtMYB61                                                             <-  <---------ANAC58   --------->MYB59      <---------ANAC58                            <----------DOF2  <---------ANAC58 <---------MYB52(1)     <---------ANAC58                      <---------HSFB2a(2)-- ----->MYC2        <<<<<<<<<MYB98  <---------YAB1         <---------At4g35610   --------->HSFB2a(2)<- ------MYC2      <------MYB83 --------->YAB1         <---------YAB1   <---------YAB1  <---------DAG2- ----->MYC3      <------MYB46(1) <------ZmHOX2a(1)<---------------AGL15   --------->YAB1 <---------AHL20(2) ------MYC3 <-----------RAV1(1)<---------TOE2(3)  --------------->AGL15  <---------YAB1  <---------YAB1   acgtgcttactcatatgttgggttaggtttaattaggatgattttcttgtttcttattttagatgagacattactatcatttccataactttttattgac  11213400              --------->ARR14(2)              <---------ARR14(2)             <---------ATERF1(1)             ------>NtERF2            <---------ETT(1)            ----------->HVH21            --------->DEAR3(1)           --------->ATERF1(1)      ------->MYC3      <-------MYC3     ----------->RAV1(2)   <---------ALFIN1 -------->P--------->DEAR3(2) --------MYB52(2) --------MYB111(2) --------MYB55(2)         --------->YAB1                                                 <---------AHL20(2) ------->MYB46(3)        <---------YAB1   --------->AHL20(2)               <------ZmHOX2a(1)  ------- --------MYB111(1)       <---------AHL20(2)                              <---------TOE2(3)    <------ ------>GAMYB<---------RAP2.6(3)          <---------AHL20(2)      <---------TOE2(3)     --------->AHL20(2)   aactaccacatgggccgacccgtttatattataagtttagggatttaaaaacaaaattgttgaattttaagaatttaggaatatgttacatttattagct  11213500  Previous    Next  AGI:  At1g31320.1    Description:  LBD4 (LOB DOMAIN-CONTAINING PROTEIN 4). Identical to LOB domain-containing protein 4 (LBD4) [Arabidopsis Thaliana] (GB:Q9SHE9;GB:Q6DBF5); similar to ASL5 (phosphoenolpyruvate carboxykinase1) [Arabidopsis thaliana] (TAIR:AT2G30130.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47085.1); contains InterPro domain Lateral organ boundaries, LOB (InterPro:IPR004883) Range:  from: 11212998    to: 11214363    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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