Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                      --------->CCA1(2)                                                  --------->YAB1                     --------->GLK1(2)                                                 <---------YAB1                      <---------ARR11(3)                                             ------>ZmHOX2a(2)                       --------->ARR11(3)                                           --------->ARR11(3)                 ---------->DOF2                                           <---------ARR11(3)                --------->AHL20(2)                                          --------->YAB1                  --------->YAB1  <-----------GT1                    --------->At4g35610            --------->HSFB2a(2) ------->YAB1                        <---------At4g35610            <---------HSFB2a(2)            <-   gtaataacttcatgtttaatatagagaagacttattttcagctatgatcttatgatatggaatctatcttctacaaaaataaaagaaaatctaagaccaa  11170800                                                                                         --------->KAN4(2)                                                                                        <---------HSFC1(2)                                                                                        --------->HSFC1(2)                                                                                        <---------HSFB2a(1)                                                                                        --------->HSFB2a(1)                                                                                        <---------KAN4(1)                                                                                       <---------KAN4(2)                                                                             <--------ATHB1                                                                             --------->AHL20(2)                                                                             --------->YAB1                                                               --------->YAB1--------->ATHB51 ------>ZmHOX2a(1)                                                              --------->AHL20(2)     <------ZmHOX2a(1)                                                           <---------AHL20(2)<---------ICU4   <------                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------AHL20(1)                                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    <---------ATHB12  -------                              <------MYB46(1)             <---------AHL20(2)<---------ATHB51 --------                              <---------MYB46(3)    <---------MYB59        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                  <------MYB46(1)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   --------->YAB1--------->KAN4(1) ------TEIL       <------MYB83<------MYB83  --------->ICU4--------->AHL20(2)--------->ICU4   <-------   gtccatcgatagtttttagtgggtttcttagttggtttctaagagaataatgggcctaaattaaataaaaattcaacaataattttaggaacgttcctaa  11170900                               <---------ANAC58                               ==============================================bZIP_DOF                               --------->TGA1a  <------MYB83                 <---------TGA1a  <------MYB46(1)              <---------ANAC55(2) <---------TOE2(3)             --------->ANAC55(2)                                            ------- --------->MYB59               <---------ANAC58                                    --------->At4g35610 ---------AGL15                --------->O2                                        <---------ZAT2<--- -------->AGL15                <---------O2      <---------GLK1(2)                 <---------At4g35610 --------->AGL3          --------->ANAC58     <---------WOX13(1)     ----------->GT1     <----------DOF2 ----------AGL3          --------->ANAC58  <---------YAB1         ---------->DOF2  --------->ZAT2<---   aattaggtttttggaaactcattagaaacgcatacgtggctatttgtgatagattgtttgttttaaacaaaaggaaaattttctcagctctcttttgttt  11171000          <------NtERF2         ------>NtERF2                                                                              -        <---------DEAR3(1)                                                                          -        <---------At1g77200                                                         <---------ARR14(2)       <---------------------WRI1                                              ----------->RAV1(1) --      <-----------HVH21       <---------At4g35610                              ------->GAMYB       -- -------------->WRI1--------->DAG2            ------>ZmHOX2a(2)    <---------LBD16  --------->ARR14(2) ---MYB46(1)      ---------->DOF2 --------->ATHB12         <---------ICU4     --------->MYB46(3)   <- ---MYB83<---------RAP2.3(1)  --------->At4g35610          --------->YAB1    -------->P--------->ANAC46   ggtttcttcgtcggcgataccaaaggcgattcagcttgatttgtttgatccagcgttttgatcatgaaatcgggagagcaaccacatatactcaatatac  11171100                                                             <-------GAMYB                                                            ----------->GT1                                                            <---------MYB46(3)           <---------YAB1                              ------>ZmHOX2a(2)         --------->YAB1                              <---------AGP1        --------->ICU4                               <---------ARR14(2)     <------NtERF2                                   <---------ARR11(1)    --------->LBD16                                  <-----------ARR10   --------->RAP2.3(2)                               --------->ARR14(3)   --------->LBD16                                   --------->ARR11(3)   --------->RAP2.6(2)                               <---------ARR11(3)  <---------LBD16                                    <---------ARR14(3)                      <------- --------->MYB52(1)                                  --------->ARR14(2)                      -------- -------->DEAR3(1)                                  <---------ARR14(1)                       -------- ------>GAMYB  ------>ZmHOX2a(2)      <---------ATHB12<------ZmHOX2a(2)                      <------- ------->MYB46(3)                   ------>MYB46(1) <---------CCA1(2)                      <------ZmHOX2a(1) ------->DEAR3(2)                   ------>MYB83   --------->LBD16     ------------>CBF <-----------RAV1(2) --------MYB55(2)        <------------CBF        <---------LBD16  <------------CBF   --------->ZAT6   aaccgccggaatgatgatcgacgatgagattgttcaccaaatcaacttcaaaccggatcttgtggttatattgttcaattctttgtaacaccaggagctt  11171200      *TSS                                 --------->ZAT2                ------->TEIL   <---------O2                            <---------At4g35610         <---------ZAT18 --------->YAB1                            --------->At4g35610         --------->ZAT18 --HSFC1(2)                                <---------ZAT2       <----------DOF2 ->HSFB2a(1)                          --------->GLK1(2)    <---------ARR11(3) ->HSFC1(2)                           <---------ARR14(2)   --------->ARR11(3) --HSFB2a(1)                    ----------->GT1           <---------CCA1(2)   ctatcatgtggctatctcatgagctcttaccaagaggtagaatccagctctgtctcaagtatatctcttttaatgcacttggagttttctgaaatttttg  11171300                                                 <---------ANAC46                                                 <---------ANAC58                                   ----------->HVH21                      <-----------RAV1(1)                                 --------->At4g35610              <---------AHL20(2)      <---------TOE2(3)                             <----------DOF2     <---------ANAC58 --------->AHL20(2)      <---------TOE1(3)            <---------MYB46(3)   <---------At4g35610             --------->AHL20(2)       --------->MYB59   ctcaaaaaacatggttgtggcaaaacagagcctttatctgacatagagatggcttaagaacaggctaataaatgatatgttgtcttaagttttaggttct  11171400                        --------->HSFB2a(1)                        <---------HSFB2a(1)                      <---------GLK1(2)                <------MYB46(1)                <------MYB83               --------->MYB59                                                   <---------HSFB2a(2)            --------->ATHB12                          <---------TOE2(3)       <----------DOF2         <---------ANAC58             <---------HSFB2a(2)    <---------At4g35610 --------->HSFB2a(2)         <---------AtLEC2             --------->HSFB2a(2)  <-----------GT1<---------RAP2.6(2)         <---------ANAC46      <---------ALFIN1   <----------DOF2        --------->RAP2.6(3)         <---------ANAC58    ------>ZmHOX2a(1)<---------RAP2.6(2) <---------HSFB2a(2)    <-----------RAV1(1)<---------KAN4(2)     --------->RAP2.6(3)  --------->HSFB2a(2)              <-   atctgaatgttgcatgtttggtcagaatgtccttcaccttctagtatttcggctttaagttttagcttctagtatttcggcttctagtatatgtgtaata  11171500                                                                                             <------MYB46(1)                                                                        <---------ARR14(2)   <------MYB83                                                                 <------MYB46(1)            <--------                                                                 <------MYB83            --------->ATHB12                                                                 <---------ANAC46 <------MYB83                <------MYB46(1)                                 <---------MYB46(3)<---------ANAC46                <------MYB83                                    --------->MYB46(2)<------MYB46(1)               <---------AtMYB61                       --------->ARR14(2)        --------->MYB46(2)            --------->ATHB12                           <---------ARR14(2)        <---------MYB46(3) ---------DOF2 --------->MYB59                  --------->At4g35610     --------->ARR14(2)  ---------   actttgagactgaatgtttggtctgaatgttttcagtttatgggttaatgagatgagtatttgtgtttggtgagtatttgtgtttggtgaatgtttggtc  11171600                                          <------MYB83                                          <------MYB46(1)                                         <---------AtMYB61                                --------->ATHB12                                         --------->MYB59       <---------TOE2(3)         <---------YAB1                                --------->ARR14(2)             <---------TOE1(3)<---------MYB52(1) -AtMYB61                --------->At4g35610                  <---------At5g28300        --------->ICU4 >MYB59       <---------TOE2(3) <---------ARR14(2)           <-----------GT1<---------At4g35610   tcaatgttttcagtttatggattaatgagatgagtatttgtgtttggtctgaatgtttgtagtttacggttttgtttcatctgttaatgtcatgatttgc  11171700  Previous    Next  AGI:  At1g31258.1    Description:  other RNA Range:  from: 11171206    to: 11171816    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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