Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            --------->At4g35610           ------>ZmHOX2a(2)          --------->GLK1(1)          <---------GLK1(1)          <------ZmHOX2a(2)                                                                 ---------         --------->ARR11(3)                                                                <---------YAB1         <---------ARR11(3)                    <---------At4g35610          --------->TOE1(3)  ------ --------->ARR11(3)       <---------At4g35610<-----------RAV1(2)---------->ID1           --------->YAB1 ------>DOF2       <---------TOE1(2)   <---------TOE1(2)  <---------YAB1  ------->TEIL   <---------ICU4   aaagacattgagatctcttcgaatgttaagcagacccatctcaggtctcagatgtttctcattcttgtcccatttgtacctgaacaaaaaatcatcataa  11144200                                                                                                <----                                                                                                <----                               --------->ANAC58                                        --------->At4g35610                               --------->ANAC55(1)                                     <---------At4g35610    <---------AHL20(2)         --------->ANAC58                                        --------->ZAT2    <---------AHL20(1)         --------->ANAC55(2)                      --------->At4g35610     -----    --------->AHL20(2)         --------->ANAC46                         <---------At4g35610     -----    --------->AHL20(1)     <---------ALFIN1           <---------At4g35610             ----------->RAV1(1)   --------->AHL20(2)   ------->GAMYB   --------->ANAC46      --------->YAB1        --------->At4g35610 >YAB1          XXXXXXXXXXXXXXXXXXXX>MIR164C          --------->At4g35610           <---------At4g35610 ---->DOF2--------->At4g35610<---------ALFIN1      <---------MYB52(1) <---------bZIP60(1)  --------->ALFIN1   agagaataaatttgctgaagaaacaacacacacacgcattacacataccctccgatagctccaagaagaatggcatcagactgtttagcagcagtggaag  11144300                                        ------>NtERF2                             ---------->DOF2                         <---------ARR14(2)             <---------HSFB2a(2)                         --------->ARR14(2) ---------->DOF2                        ------>MYB83    --------->At4g35610 --------->GLK1(1)     --------->LBD16    ------>MYB46(1) --------->LBD16 ------>ZmHOX2a(1)     ------>NtERF2    <---------MYB59 <---------LBD16   --------->HSFB2a(2)   <---------LBD16    --------->AtMYB61--------->DEAR3(1)   <---------GLK1(1)              <---------  ------>ZmHOX2a(1)------>NtERF2   --------->At4g35610 <---------LBD16                   --------->ZAT2 -----HSFC1(2)--------->GLK1(1) <---------At4g35610   ----------->RAV1(2)                <---------At4g35610 -----HSFB2a(1)   --------->DEAR3(1) <---------ATERF1(1)--------->LBD16            <---------GLK1(1) ---->HSFC1(2)<---------GLK1(1) <---------ZAT2     <---------At4g35610             --------->GLK1(1) ---->HSFB2a(1)   <---------ETT(1) --------->ZAT2  --------->GLK1(1)        ------>ZmHOX2a(1)   tttcctccggcaatggaactccgaccaaatccaaagctgctccgccgaaaggcatctcctggaaatcaaactctagtccttggagaaatccagctttctg  11144400                                                                                                   --                                                                                                 <---                                                                                                -----                                                                                                -----                                                                                               ------                                                                                             <-------                                                                                             --------                                                                                             ------>NtERF2                                                                                           --------->RAP2.3(1)                                                                                           <------NtERF2                                                                                           --------->ATERF1(1)                                                                                          <----------                                                                                          ------>NtERF2                                                                                          <---------RAP2.6(1)                                                                                          <---------ATERF1(1)                                                                                          <---------RRTF1(1)                                                                                          <---------ORA47(2)                                                                                          <---------DEAR3(2)                                                                                          <---------RAP2.3(1)                                                                                          <---------DEAR4(2)                                                                                         --------->ATERF1(2)                                                                                         <---------ATERF1(2)                                                                                         <---------DEAR3(1)                                                                                         <---------RAP2.3(2)                                                                                         --------->DEAR3(1)                                                                                         --------->ALFIN1                                                                                         <---------RRTF1(3)                                                                                         <---------RRTF1(2)                                                                                         <---------RAP2.3(3)                                                                                        --------->ATERF1(1)                                                                                        <---------ABI4(1)                                                                                        --------->RAP2.3(1)                                                                                        <------NtERF2                                                  --------->At4g35610                  <---------RAP2.3(1)                                                  <---------At4g35610                  <---------ATERF1(1)                                             --------->LBD16                          <---------RAP2.3(2)                                             ------>NtERF2                            <---------DEAR3(1)                                             --------->HSFB2a(2)                     <---------At4g35610                           --------->HSFB2a(2) ---------->DOF2                    ---------->DOF2<---                           <---------HSFB2a(2)<------NtERF2                      ----------->HVH21 --                  --------->CCA1(2)          <---------HSFB2a(2)                <-----------HVH21<---            ----------->RAV1(1)             --------->LBD16                  <---------LBD16---------            =========================RAV   <---------LBD16           <---------MYB52(1)<---------DEAR4(2)   --------->KAN4(2) <-----------GT1     --------->DEAR3(1)     <-----------GT1--------->LBD16<------ -DOF2--------->TOE2(3)  ----------->RAV1(2)<---------LBD16----------->GT1 <-----------GT1<---------ERF1   aagcacattcttagcaacagatataacttctggaccgataccatcgccgggaagcagagtgatgttataccgttttttcaccggtgaagcggcggcgcac  11144500                                                                                           <------NtERF2                                                                                          <---------ATERF1(1)                                                                                         --------->RRTF1(2)                                                                                         --------->ANAC46                                                                                         --------->RAP2.3(3)                                                                                         --------->RAP2.6(2)        --------->ANAC46                                                                 --------->DEAR3(1) ---->MYB46(1)                                            --------->GLK1(1)              --------->RAP2.3(2) ------MYB59                                             <---------ARR11(3)              --------->RRTF1(3) ---->ANAC58                                        <---------MYB52(1)                   --------->DREB2C(2) ---->ANAC58                                      --------->LBD16                       --------->RAP2.3(1) ->TEIL--------->SPL7                      <---------ARR14(2)                           --------->ORA47(2) --ZAT18<---------DEAR3(1)                 <---------ARR11(3)                           --------->RRTF1(1) ->ABI4(2)     --------->ANAC46            --------->ARR14(2) <---------HSFB2a(2)       --------->ERF1 -TCP11(1)     --------->ANAC58            <-----------ARR10  --------->HSFB2a(2)     --------->ANAC46 ------MYB46(2)--------->ANAC58     <---------ZAT14--------->LBD16                  ---------->DOF2 ---->MYB83 <---------SPL7    <-----------HVH21   --------->ANAC46        --------->MYB52(2)    <---- ------MYB111(1)        <---------YAB1     ------->TEIL  --------->ARR11(3)        <---------ARR14(2) >DEAR3(1)  <---------ZAT18 ------>ZmHOX2a(2)    <---------LBD16        <---------MYB52(1)------>NtERF2 ---ALFIN1  ------>NtERF2--------->ATHB12 <---------CCA1(2)------>ZmHOX2a(2)       --------->ARR14(2)   ctaattcgatacggcgcacgaaacttatgatcggtgagagaactgtatcttcccggtatgatctccagacggatgttagtttgcaaaaacgccgccatct  11144600                    --------->AtMYB61                 --------->DEAR3(1)                 <---------ALFIN1             --------->ZAT18                 --------->AtMYB61            --------->ARR14(2)                <------NtERF2                 <---------ARR14(2)               <---------ATERF1(1)            --------->ZAT14              *TSS --------->MYB46(3)      <---------ANAC46              --------->PCF2       -------->P <---------ZAT14                      ----------->RAV1(2)             <---------ZAT18      <-----------GT1  <---------ZAT14        --------->MYB52(2) <-----------GT1--------->MYB46(3)--------->MYB52(1)          <---------MYB52(1) <-----------GT1 ------DOF2  --------->ZAT18    <---------MYB52(2) --------->ZAT14    ----------->GT1          ------   ttttttcgagtttagggcaccaccatcggcaaaaactaaccatttgagtatactacagagaccggttatctctggttatttgttaacctgattttggttc  11144700                                                                   <---------O2                                                                --------->ZAT14                                                               <---------MYB52(1)                                                           ------>MYB46(1)                                                           ------>MYB83        <---------AHL20(2)        <---------DAG2         <---------ALFIN1     <-------TEIL       ----        --------->AHL20(2)        <----------DOF2       --------->MYB46(3)<------NtERF2          ----    <---------YAB1--------->YAB1<---------At4g35610  --------->ZAT18    <---------RAP2.6(2) XXXXXXXXX ------>CBF  ------------>CBF   --------->At4g35610  *TSS--------->AtMYB61------>NtERF2    ----------   aatgttctcattaatttcaattttaagttctatcagctttttggactctctcatgtccaccatccgttcacttggccgcgttcatataaaccaaaaaccg  11144800                                  ----------->RAV1(1)                                 --------->AtMYB61                               ------>NtERF2                              --------->REM1(1)                             <------NtERF2                            ------>NtERF2                            ----------->RAV1(1)                            <---------ATERF1(1)                           --------->DEAR3(1)                           ----------->HVH21                           <---------ETT(2)                          <---------------------WRI1                          --------->RAP2.3(1)                         ------>NtERF2                         <---------ATERF1(1)                         --------->LBD16                  --------->KAN4(2)           --------->ARR11(3)                 --------->HSFC1(2)------>MYB46(1)                                               <---   ----------->RAV1(1)  <---------DEAR3(1)    <---------ARR11(3)               <---------GLK1(2) ---- -->MYB46(1)     --------->HSFB2a(1)         <------MYB46(1)          <-----------HVH21          <--- -->MYB83        <---------HSFC1(2)------>MYB83              <---------HSFB2a(2)<---------ARR14(2)<-- XXXXXXXXXXXX>MIR850   <---------LBD16       <------MYB83   <---------LBD16 --------->YAB1 -------->P >DOF2           <---------HSFB2a(1)        <---------AtMYB61--------->HSFB2a(2)--------->GLK1(2)----   aacaacaacaaaaattcgaaaattctccggcgacaccaacaatgggaaggtctctaatattctctggaaacatgtcattgagaatctctcacttacccag  11144900                                                                      --------->ARR11(3)                                                              --------->ZAT14                                                              <---------SPL7                                                   ----------------->AG         --------->LBD16                       --------->HSFB2a(1)    --------->ARR14(2)         <---------At4g35610                   --------->HSFC1(2)     <---------ARR14(2)         --------->At4g35610           <---------ZAT14 --------->GLK1(1) <---------CCA1(2)                     --------->ZAT14 <---------GLK1(1) --------ARR10                    --------->SPL7<----------DOF2  <---------TOE2(1) ----->ARR14(2)                 <------NtERF2  <---------HSFC1(2)<---------TOE1(1) ------ARR11(3)                 <---------SPL7 <---------HSFB2a(1)   <------ZmHOX2a(1) ----ZmHOX2a(2)                 ----------->HVH21  ----------------->AGL1                   --------- ----->ARR11(3)                --------->RAP2.6(2) <-----------------AGL1                   <--------   atcatctcttccgctgcaaaacccaatttcaggccggacagtgaacagaactttccgatatcggtgtacgaggattttgtctaatagcttcaagtccaca  11145000                                                         <---------ARR14(2)                                                         --------->GLK1(2)                                                         --------->ARR14(2)                                                        --------->ARR14(2)                   --------                                                        <---------GLK1(2)                    <-------                                                        <---------ARR14(2)               ------>NtERF2                                                      --------->LBD16                  <---------LBD16                                                     <---------HSFB2a(2)           --------->ARR11(3)                                                     --------->HSFB2a(2)   --------->LBD16   --------                                                    <---------LBD16      <---------LBD16 --------->LBD16                                           --------->ANAC58             --------->MYB52(1) <---------ALFIN1                                           --------->ANAC46    ------>NtERF2       <---------ARR11(3)            ---------->DOF2                --------->ANAC58<---------DEAR3(1)     <---------CCA1(2) >ZAT18    --------->AtMYB61<---------TOE2(3)   --------->GLK1(1)      --------->AtMYB61 <-----------HVH21 -ZAT18  >>>>>>>>>>MYB80    <---------TOE1(3)   <---------GLK1(1)     --------->MYB46(3)--------->ANAC46   acgagacttcaaaccaaagctgttctgtctgaggtttctgatcagacgcgatatcccagaatcggcgctaaaaccaccggaactatatctccggcacacc  11145100  Previous    Next  AGI:  At1g31180.1    Description:  3-isopropylmalate dehydrogenase, chloroplast, putative. Identical to 3-isopropylmalate dehydrogenase 1, chloroplast precursor (IMDH1) [Arabidopsis Thaliana] (GB:Q9SA14;GB:Q1EBW0); similar to 3-isopropylmalate dehydrogenase, chloroplast, putative [Arabidopsis thaliana] (TAIR:AT5G14200.3); similar to 3-isopropylmalate dehydrogenase, chloroplast, putative [Arabidopsis thaliana] (TAIR:AT5G14200.1); similar to 3-isopropylmalate dehydrogenase, chloroplast, putative [Arabidopsis thaliana] (TAIR:AT1G80560.1); similar to 3-isopropylmalate dehydrogenase, chloroplast precursor (Beta-IPM dehydrogenase) (IMDH) (3-IPM-DH) (GB:P29102); contains InterPro do Range:  from: 11142695    to: 11144614    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g31190.1    Description:  inositol monophosphatase family protein. similar to VTC4 [Arabidopsis thaliana] (TAIR:AT3G02870.3); similar to VTC4, 3'(2'),5'-bisphosphate nucleotidase/ L-galactose-1-phosphate phosphatase/ inositol or phosphatidylinositol phosphatase [Arabidopsis thaliana] (TAIR:AT3G02870.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41989.1); contains InterPro domain Inositol monophosphatase; (InterPro:IPR000760) Range:  from: 11144753    to: 11146911    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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