Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                               xxxxxxxxxxxxxxxx>smallRNA(i)                                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                            <xxxxxxxxxxxxxxxxsmallRNA(s)                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                           <xxxxxxxxxxxxxxxxsmallRNA(s)                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                          <---------At4g35610                                                          <xxxxxxxxxxxxxxxxsmallRNA(s)                                                          <---------LBD16                                                          ------>NtERF2                                                          <xxxxxxxxxxxxxxxxsmallRNA(i)                                                          --------->At4g35610                                                         <xxxxxxxxxxxxxxxxsmallRNA(s)                                                       <---------At4g35610                                                       --------->At4g35610                                                       <xxxxxxxxxxxxxxxxsmallRNA(s)                                                      <xxxxxxxxxxxxxxxxsmallRNA(s)                                                  <xxxxxxxxxxxxxxxxsmallRNA(s)                                                  ---------->DOF2                                               <xxxxxxxxxxxxxxxxsmallRNA(i)                                               <xxxxxxxxxxxxxxxxsmallRNA(s)                         -                                              xxxxxxxxxxxxxxxxx>smallRNA(fl3)                      --                                         <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                   <xx                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                xxx                             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<-                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                 xxx                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                           ---------                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xx                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)------>NtERF2                 <---------ANAC46                       <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)--------->LBD16        <xxxxxxxxxxxxxxxxsmallRNA(i)                       <xxxxxxxxxxxxxxxxsmallRNA(i)  --------->MYB46(3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   xxxxxxxxxxxxxxxx>smallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     <---------AHL20(2)<xxxxxxxxxxxxxxxxsmallRNA(s)xxxxxxxxxxxxxxxx>smallRNA(s) <xxxxxxxxxxxxxxxxxxxx     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <xxxxxxxxxxxxxxxxxxxxx   <----------DOF2 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <xxxxx  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ----------->GT1  <xxxxx ----------->GT1   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxsmallRNA(s)--------->MYB52(1) ----->DOF2      <------------------------ANAC81<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   xxxxxxxxxxxxx -ZAT18        xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<xxxxxxxxxxxxxxxxxxxx >ZAT18   xxxxxxxxxxxxxxxx>smallRNA(s)  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxx>smallRNA(s)   aagcggtttaatttgtctgcgatttagtccatctcatttttgaggcgaacaataaaccgctgcggaccaagtttatttgtatgtaaaaacggtccgtaga  11117600      ------>NtERF2      <xxxxxxxxxxxxxxxxsmallRNA(s)     <xxxxxxxxxxxxxxxxsmallRNA(s)     xxxxxxxxxxxxxxxx>smallRNA(s)   <---------At4g35610   ----------->RAV1(2)   --------->At4g35610   <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                     --------->ANAC46  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                    --------->ANAC58 ------>ZmHOX2a(2)                                                                       --------->DEAR3(1) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                    --------->ANAC58 -------->ARR14(1)                                                                       --------->RAP2.6(2) ------->ARR14(2)                                                                        ------->GAMYB xxxxxxxxxxxxxxsmallRNA(i)                                                               --------->DREB2C(2) xxxxxxxxxxxxx>smallRNA(i)                                                              <---------MYB55(2) --------ARR14(2)                                                                       --------->DEAR3(2) xxxxxxxxxxxxx>smallRNA(s)                                                              --------->MYB46(3) >LBD16                                                                                 <xxxxxxxxxxxx xxxxxxxxxxxxxxsmallRNA(s)                                                              <------------AtMYB77 xsmallRNA(le3)                                                    --------->WRKY12    ------>MYB46(1) xxsmallRNA(fl3)                                                   --------->WRKY38(1) ------>MYB83 xxxxxxxxxxxsmallRNA(i)                           --------->AHL20(2)<---------DOF5.7(2)-------->P   - xxxxxxxxxxxsmallRNA(s)            --------->YAB1--------->YAB1    ----------->HVH21  <---------ALFIN1 xxx>smallRNA(i)               --------->ATHB12 --------->AHL20(2)--------->DOF5.7(2) --------->MYB52(1) xxsmallRNA(si3)      <---------AHL20(2)  ----------->GT1  <---------YAB1 xxxxxxxxxxxxxxxx>smallRNA(s)   tgatccgctgcggttttcttctattttttttggtcattgatgaattgtaaataaaaatagtctgattcgttgacggttttgtccgtcccaaccgccataa  11117700                                                                                                   <-                                                                                                   --                                                                                                   --                                                                                                   <-                                                                                                  ---                                                                                                  <--                                                                                               <-----                                                                                               ------                                                                  --------->ZAT6              -------                        --------->ANAC46                       ------>ZmHOX2a(1)           --------->AHL20(2)                    <-----------GT1                        --------->ARR14(2)           <--------HAHB4          ---------->DOF2                                  <---------ARR14(2)           --------->YAB1       --------->TOE2(3)--------->ANAC58                  --------->GLK1(1)            <---------YAB1       --------->TOE1(3)--------->ANAC58                  <---------CCA1(2)        <---------ANAC55(2) xxxxxxxxxxxsmallRNA(se3)  --------->YAB1                 <---------GLK1(1)        --------->ANAC55(2) -------->AtLEC2 --------->ARR14(2)                     --------->YAB1    ---------->DOF2 <---------YAB1   ccattcaaaccctaaatcgaattcacaagtcataacaactaattctccctaaatataagcatatcctaacacaaactaaagaaatacctattattattta  11117800                                <-----------GT1 --------AHL20(1)          <---------AHL20(2) ------->AHL20(2)         --------->AHL20(2) ------->AHL20(1)      --------->AHL20(2) --------AHL20(2)     <---------YAB1     --------->ANAC46 ------------>AGL15 <--------HAHB4   ------>MYB46(1) -------------AGL15 --------->YAB1   ------>MYB83 ----AHL20(2)      <---------YAB1------->TEIL  <---------ICU4       <---------CCA1(2)     ------>ZmHOX2a(2) --->AHL20(2)  --------->ANAC55(2)   --------->AtLEC2       --------->At4g35610         --------->ARR11(3) -->AHL20(2)   <---------ANAC55(2)--------->MYB46(3)  ---------->DOF2                   <---------ARR11(3)   ataaatttagtaagaatacctattattatttaatgaaccatccaaaccatacttacaaaagtagcagtccctatctaaatagaaactgttgatctcaagg  11117900                              <---------ALFIN1                              ------->GAMYB                             --------->MYB46(3)                            -------->P                        --------->ANAC46                        --------->ANAC58                                              <---------HSFB2a(2)                        --------->ANAC58                                              --------->HSFB2a(2)                       --------->DAG2                                     *TSS  <---------TOE1(3)                      ---------->DOF2 <----------DOF2         <-----------GT1   <---------TOE2(3)   -   tttcatttgctaaaaaaaaaaaaaaaaagcaaccacatttctttctctatctcactctctcgtttaacattctcatgaaattagggttttagaaagatag  11118000                                                               ----------->HVH21                                                             <---------ANAC55(2)                                                             <---------O2                                                             --------->ANAC55(2)                                                             --------->TGA1a                            ----------->GT1              --------->CCA1(2)                           ----------->GT1          ===================bZIP_DOF                           <---------ZAT6    ----------->GT1 =======================bZIP_DOF                         ----------->GT1    <------ZmHOX2a(1)--------->O2---------->DOF2              ---------->DOF2          --------->CCA1(2)<----------ID1--------->ANAC58             <------ZmHOX2a(1)    ---------->DOF2   ---------->DOF2   --------->ANAC58       <------- -------->ATHB12--------->DAG2    =====================================bZIP_DOF---------->DOF2   atcgattgaagatgaggaaaggtaagagagtgataaaaaagatagaggagaaaataaagagacaagtgacattcgcaaagagaaagaagagtctaatcaa  11118100                                                                                           -------->P                                                                                       --------->ZAT6                                                                ------->GAMYB       <---------ALFIN1                --------->ZAT14                          --------->ANAC58       <---------At4g35610    --------->At4g35610           --------------------->WRI1 ----------->RAV1(1)--------->At4g35610 --ATHB12------->TEIL          <---------ALFIN1          --------->ANAC58  <---------GLK1(1)  <------   gaaggcatatgaactctctgttctctgcgatgtccaccttggtctcatcatcttctctcactccaacaggctctacgatttctgctccaactctaccagg  11118200                                             ---------->DOF2                            --------------->AGL15         --------->ARR11(3) <---------------AGL15       <---------AHL20(2)  <-----------------AG                                             ---------      --------->AHL20(2)   <-----------------AGL1            ------->TEIL      ----------->GT1 ---TOE1(2)  --------->AtLEC2      ----------->GT1---------->DOF2  <----------DOF2   ---------->DOF2   tttatatataaaatcatgcatatgtgtgttcttgttttggtaaaacaaaaagaaaagaaaatgaatgctctttaatatggacagaaaaaaagagttattg  11118300                                                                <------MYB83                        <---------ICU4                          <------MYB46(1)                     --------->WOX13(1)                         <---------MYB46(3)                    <---------AHL20(2)                         <---------TOE2(2)                    --------->AHL20(2)                        <---------MYB52(1)                   --------->ICU4                            <-------GAMYB                         <-                <---------YAB1   --------->YAB1        <----------DOF2                         <-----       <-----------GT1 <---------ATHB12           <----------DOF2         <----------DOF2     <------ >ATHB12      ----------->GT1    <---------ICU4  <---------ICU4<---------TOE1(2)             <-------   aagtttttttttctagttgtaattaatcaataccatcatcacttggtttcatcttttctttttcgttggtttacttctttttttttgtgaaactttcgtt  11118400                                                            <-----------RAV1(1)                                                            --------->ALFIN1                  -------                                                        ---------->DOF2                       -------                                                    --------->WOX13(1)               <---------ZAT14 <---------AHL20(2)                               <---------YAB1  --------------->AGL15      -------- --------WOX13(1)          --------->GLK1(2)    --------->ATHB12  <---------------AGL15    <---------SPL7 ----MYB52(1)  <---------AHL20(2)              --------->ICU4    <---------ANAC58    --------->ZAT14 -GAMYB        --------->AHL20(2)              <---------YAB1    <---------ANAC58    <---------ZAT18 --ANAC46      --------->AHL20(1)     <------ZmHOX2a(1)--------->YAB1          <-----------GT1-------   gatttacttaagagaaataaaatgctgacaatcttgcctaggaaatgagatgattaatcaaagtgttgcttcatttagttttttctgttcactcgtacgc  11118500  Previous    Next  AGI:  At1g31140.1    Description:  AGL63 (AGAMOUS-LIKE 63); DNA binding / transcription factor. similar to AGL42 (AGAMOUS LIKE 42), transcription factor [Arabidopsis thaliana] (TAIR:AT5G62165.3); similar to AGL42 (AGAMOUS LIKE 42), transcription factor [Arabidopsis thaliana] (TAIR:AT5G62165.2); similar to AGL42 (AGAMOUS LIKE 42), transcription factor [Arabidopsis thaliana] (TAIR:AT5G62165.1); similar to MADS-box protein FBP24 (Floral-binding protein 24) (GB:Q9ATE5); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) Range:  from: 11117974    to: 11119766    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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