Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                --------->ANAC58                                                              --------->ANAC58                                                         --------->DAG2                                                        ---------->DOF2                                                        --------->SPL7                      <------ZmHOX2a(2)                           --------->WOX13(1)          <---------MYB52(1)            ----------->GT1            --------->TOE2(3)     <------ZmHOX2a(2)   <---------SPL7                --------->ALFIN1          --------->ARR11(3)     <-----------ARR10 <---------At5g28300 --------->GLK1(1)   --------->ARR11(3) ---------LBD16      <---------ANAC58             <-----------GT1      <---------GLK1(1)   <---------ARR11(3) -------ARR14(2)     <---------ANAC46   --------->TOE1(3)--------->ANAC58        --------->DAG2 ------>ARR14(2)     <---------ANAC58   --------->TOE2(3)--------->ANAC58      ---------->DOF2   tatcgggattaataccttgaattgcttgtcaatcggatcaaaccctaaaaatttaccgtaaggcacgctcttgaaatccagtaaaggtggtaagatcaca  11005000                                 --------->ANAC58                                 --------->ANAC46               <-----------------AG                        --------->ANAC55(2)                   ------>ZmHOX2a(2)                   ----------->GT1                          <---------ARR14(2)                   <---------ZAT6--------->ANAC58       <---------LBD16                  <---------TOE1(3)                   <----------DOF2         <---------ANAC46  <-----------HVH21<-----------HVH21<------ZmHOX2a(2)                -------       --------->ZAT18  <---------ANAC55(2)------>ZmHOX2a(2)--------->ARR14(2)    <------ZmHOX2a(2)   tacccatactgccctgtgctagggttacatatcacacccaagtgatcgtcacccttctttcggatcgtcatattagggaaatagatcaaactagaagcat  11005100                 <---------ANAC58                 <---------ANAC58                                                             <------              <---------RAP2.3(3)                                                       <---------TOE1(3)             <---------ANAC46                                                           <---------TOE2(3)           <---------ANAC46            <---------At4g35610                              --------->MYB59      ------->GAMYB<-------GAMYB<---------GLK1(2)                --------->CCA1(2) --------->ICU4  --------->MYB46(3)   ---------->ID1  --------->At4g35610    --------->ANAC46 --------->ARR11(3) -->YAB1 --------->REM1(2)  ---------->DOF2        <---------RAP2.6(2)         <---------ARR11(3)   aactacaaccgtgttgtgggcgtttgtcttcaaagaatttcagatggagattagcggctactacaagagacgacttcccaagataatttttaggttgagg  11005200                                                                           --------->MYB46(3)  ------                                                              <---------ARR11(3)              -------               <---------ALFIN1                               <---------ARR14(2)              -------               --------->ANAC46                               --------->ARR11(3)             <-------          <-----------GT1    ----------->HVH21  --------->ALFIN1        <------ZmHOX2a(1) <---------YAB1 ---TOE2(3)  <---------ALFIN1--------->ETT(2)<-----------------------TaNAC69(2)     --------->ZAT14   caacgagaagaatttccactccccttcttgttcgacagcgattaagagatgtggacgagatgaagacctggtgaggaacaactcggtgaagtatgactga  11005300        <---------GLK1(1)          --------->O2        --------->GLK1(1)         ------>NtERF2       <---------GLK1(2)         <---------ALFIN1       --------->ARR14(2)     ----------->HVH21       <---------ARR14(2)    <------NtERF2  --------->ATHB12           --------->At4g35610                                                  ---  --------->YAB1         --------->ANAC46                                                        <--- <---------ATHB12        --------->ANAC58                                                --------->YAB1 --->MYB52(1)            --------->ANAC58                                           <------ZmHOX2a(2) ---->TGA1            <---------REM1(2)         <----------DOF2                     ==============HOX2a_HOX2a ---->HVH21         ----------->HVH21      <---------WOX13(1)                      --------->ARR11(3) --WOX13(1)   <---------CCA1(2)  --------->REM1(1)                           --------->YAB1<------ZmHOX2a(1)   cgaatcatggattcccatagcttcgacacgcagcgacacctcgcgattgactttgaaggcaatctcgagagtatatcaagaatgagatcaataggaatgg  11005400                                       <---------ANAC58                              ------>ZmHOX2a(1)                             <---------ANAC58                                   <---------ARR11(3)                             <---------ANAC58                                   --------->ARR11(3)  <                         ------>ZmHOX2a(2)                      <---------LBD16--------->CCA1(1)    <                       <---------ARR11(3)           <------------CBF           --------->RVE1(1)    < ------>GLK1(2)      <---------YAB1    <---------ANAC58     ------->TEIL ----------->GT1            < ------GLK1(2)     --------->YAB1      <---------ANAC46----------->GT1  <---------TOE2(3)       -----   aatctgtgttttcttcactattcatgatcgtccttgtgtttgcgagaaatcgcaaattggtgaatctctggattatggaaaatatctctgttcaaagaca  11005500   ------>ZmHOX2a(1)                                    <---------AHL20(2)  --------->TOE2(3)                                     --------->AHL20(2) --------->YAB1                                        --------->AHL20(2)   <-----------ARR10 <<<<<<<<ARR2                                   --------->DEAR3(2)    <---------ICU4 <<<<<<<<ARR2                       --------->YAB1----------->RAV1(1) --------->YAB1             ---- <<<<<<<<ARR1          --------->TOE2(3)        --------->MYB46(3)<---------AHL20(2)           <----- <<<<<<<<ARR1    ------------>CBF <-----------TBP--------->DREB2C(2) --------->ICU4         <-------- ------->CBF<---------YAB1     <---------YAB1 --------->MYB52(1)  --------->AHL20(2)    <---------GLK1(2)   caatcctaaaacttgtcattacaatccctaattcttatttataaacccaaaccgacatttaattttgtttaattatcaaatctaaactcaaattcttatt  11005600                               <---------AHL20(2)                               --------->AHL20(2)                                       --------->TOE2(3)                           <---------AHL20(2)          ------>ZmHOX2a(1)           --------->AHL20(2)                           --------->AHL20(2)     <---------GLK1(1)               <---------WOX13(1)                         --------->TOE2(3)        --------->GLK1(1)            <---------YAB1                 <---------AHL20(2)         --------->ARR14(2)           <---------AHL20(2) ----->YAB1     --------->AHL20(2)          <---------ARR14(2)          --------->AHL20(2)         -- ------TBP --------->YAB1<----------DOF2    <---------GLK1(2)           <---------AHL20(2)         <- -YAB1<-------TEIL<-----------GT1  --------->AHL20(2) --------->TOE2(3)--------->YAB1 <---------YAB1   tataaacatacactgatatttaatcttctttaattaaaaatatacagatttgatttccttatttgttttctaattttaattttgatttattcttaaatat  11005700                                                                               <---------ZAT6                                                                           <---------ANAC58                         --------->ATHB12  ----------->GT1                 <---------ANAC58                        <---------YAB1     <---------ANAC46          --------->AHL20(2)             <---------AHL20(2)     ---------->DOF2                  <---------AHL20(2)           <-- --------->GT1 <------------CBF   <---------YAB1                 --------->HSFB2a(2)              <-- --------ZAT6<---------YAB1  ----------->GT1                     <---------HSFB2a(2)              <--   agtgttaaatggcatattattgtattttgattagttattaaagaggggtgaatgaacaagaatttttctaaaaaaatgcttgtgttaaacttgatttttt  11005800                                                                                                   --                                                                                                  ---                                                                                                  <--                                                                                              -------                                                                                           --------->ARR11(3)                                                                      --------->GLK1(2)    <---------ARR11(3)                                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                ----------->GT1        --------->YAB1          --------->MYB52(1)                                 <---------YAB1           <---------ATHB12 -------ANAC58                                             --------->YAB1           --------->WOX13(1) -------ANAC46               <---------YAB1           <---------AHL20(2)      <---------YAB1  <------ -------ANAC58  ----------->GT1      ---------->DOF2  --------->AHL20(2) <-----------RAV1(1) --------   gggtgaataaactaagggatgttattcgtttatgattttaaaagagttttagtgatttaaattatcatgtataatctgttgttattcaatcaagatttat  11005900  Previous    Next  AGI:  At1g30920.1    Description:  F-box family protein. Identical to Putative F-box protein At1g30920 [Arabidopsis Thaliana] (GB:P0C2G2;GB:Q9FYH9); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G42430.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN60954.1); contains InterPro domain F-box associated type 3 (InterPro:IPR013187); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 11004223    to: 11005425    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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